Synechococcus counts determined by epifluorescent microscopy from samples collected on R/V Atlantis cruise AT15-61 in the Eastern Tropical South Pacific in 2010 (Syne_ETSP project)

Website: https://www.bco-dmo.org/dataset/3765
Data Type: Cruise Results
Version: 1
Version Date: 2012-10-31

Project
» RAPID: Synechococcus diversity and Fe stress and the relationship to dissolved metals in the Eastern Tropical South Pacific (Syne_ETSP)
ContributorsAffiliationRole
Webb, Eric A.University of Southern California (USC-HIMS)Principal Investigator
Sohm, JillUniversity of Southern California (USC-HIMS)Scientist
Copley, NancyWoods Hole Oceanographic Institution (WHOI BCO-DMO)BCO-DMO Data Manager
Rauch, ShannonWoods Hole Oceanographic Institution (WHOI BCO-DMO)BCO-DMO Data Manager

Abstract
Synechococcus counts determined by epifluorescent microscopy from samples collected on R/V Atlantis cruise AT15-61 in the Eastern Tropical South Pacific in 2010.


Coverage

Spatial Extent: N:-10 E:-80 S:-20 W:-100
Temporal Extent: 2010-02-01 - 2010-02-24

Dataset Description

Synechococcus epifluorescent microscopy counts from AT15-61 (ETSP2010) cruise.


Methods & Sampling

Dates are given in local (Chile) time. Clocks were not adjusted while at sea.


Data Processing Description

BCO-DMO calculated lon from the lon_360 column provided by the PI. Parameter names were changed to conform to BCO-DMO convention.


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Data Files

File
Synechococcus_ETSP.csv
(Comma Separated Values (.csv), 6.05 KB)
MD5:32cc8238932e019e4adc31b3476daafb
Primary data file for dataset ID 3765

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Parameters

ParameterDescriptionUnits
cruise_id

Cruise identifier.

text
cruise_synonym

Alternate identifier of the cruise.

text
sta

Station identifier.

unitless
date_local

Local date. format: mm/dd/YYYY

unitless
month_local

2-digit month of year, local. format: mm (01 to 12)

unitless
day_local

2-digit day of month, local. format: dd (01 to 31)

unitless
year

4-digit year. format: YYYY

unitless
lat

Latitude in degrees North. Negative = South.

degrees North
lon

Longitude in degrees East. Negative = West.

degrees East
lon_360

Longitude ranging from 0 to 360 degrees. Calculated from the original lon_360 provided by PI.

degrees
depth

Sample depth.

meters
cells_per_field

cells/field

unitless
vol_filt

Volume filtered in milliliters.

mL
area_filter

Area of filter in square micrometers.

um^2
fields_per_filter

fields/filter

unitless
abundance

Synechococcus abundance in cells per milliliter.

cells/mL
abund_log

Log of synechococcus abundance in cells per milliliter.

cells/mL

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Deployments

AT15-61

Website
Platform
R/V Atlantis
Start Date
2010-01-29
End Date
2010-03-03
Description
See more information at R2R: https://www.rvdata.us/search/cruise/AT15-61


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Project Information

RAPID: Synechococcus diversity and Fe stress and the relationship to dissolved metals in the Eastern Tropical South Pacific (Syne_ETSP)

Coverage: Eastern Tropical South Pacific, coast of Chile


The unicellular cyanobacterium Synechococcus is one of the most widespread and abundant photosynthetic organisms in the ocean, contributing substantially to marine primary production. It is also extremely diverse, with 16 clades identified so far. This diversity, however, has yet to be correlated with specific, well-defined ecological niches. It is important to define what these ecological niches are in order to determine the significance of Synechococcus diversity, i.e., does the clade present in a certain regime have a large impact on biogeochemical cycling in that area? In parallel, the distribution of the clades must also be defined, to able to understand more clearly the role of Synechococcus in the ocean, and how it might change in the future. In the funded project, "The role of iron (Fe) in controlling in situ distributions and activities of marine Synechococcus OCE-0825922" investigators Jill A Sohm (J.A.S.) and Eric Webb have been mapping the distribution of Synechococcus clades in the western Pacific, the North and South Atlantic, and off the coast of Los Angeles, in order to better define the ecological niches of the many clades of Synechococcus. In this project, Webb and Sohm will participate in a research cruise occurring in February 2010 in the Eastern Tropical South Pacific (ETSP), a data poor region with little known about the ecology of its picocyanobacteria. While it has been shown the Synechococcus from clade four dominate the upwelling region farther south of the proposed cruise, the diversity of the population farther offshore is much less well defined. This cruise would allow expansion of the current database of Synechococcus clade distribution to an area where there is little to no data, and add experimental field work to an existing project, testing the specific affects of Fe, light, temperature and nutrients on the diversity of field populations. These data combined with concurrent lab research will provide insight into the potential of oceanic change to affect the distribution and the activity of Synechococcus.

In addition to defining the role and impact of Fe limitation on marine Synechococcus activity and diversity in the field, this project will develop field incubation-tested, quantitative PCR-based Fe stress diagnostics that will be available to the community. Furthermore, the investigators will attempt to isolate and make available Synechococcus strains from the region; as such representatives are not in existence. The upkeep and addition to the culture collection in the Webb lab is an important service for the oceanographic community, as these strains are sent to any researcher that requests them without charge. Metadata obtained on this cruise will be shared with the oceanographic community by depositing them in a national database. Lastly this project will provide valuable research cruise experience and career development for one post-doctoral fellow, J.A.S., and one graduate student.



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Funding

Funding SourceAward
NSF Division of Ocean Sciences (NSF OCE)
NSF Division of Ocean Sciences (NSF OCE)

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