# version: 15 April 2013 # [url links added 6/25/2013] # # Eukaryotic and Cyanobacteria DGGE band matrices and sequenced Band Matches # PI: S. Neuer (Arizona State U); J. Amacher # Phytoflux, BATS Station # 2008 - 2010 # ========================= cell_type ------------------------- eukaryote ========================= cruise_id1 cruise_id2 year month day yrday_gmt lat lon ------------------------- AE0811 235 2008 05 30 151 31.6634 -64.1665 ========================= lane z10 z20 z25 z30 z40 z60 z70 z75 z80 z85 z90 z100 z110 z120 z130 z138 z140 z150 z180 fixed_trap_150m unfixed_trap_150m unfixed_trap_a_150m unfixed_trap_b_150m unfixed_trap_c_150m unfixed_trap_d_150m band_num id_closest_match accession_number_1 identity_pcent_1 id_closest_cultured_match accession_number_2 identity_pcent_2 taxon_1 taxon_2 ------------------------- 1 0 nd nd nd 0 nd nd nd 0 nd nd 1 nd nd nd nd nd nd nd 0 0 nd nd nd nd 48 bad sequence nd nd nd nd nd nd nd 2 0 nd nd nd 0 nd nd nd 1 nd nd 0 nd nd nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 3 0 nd nd nd 0 nd nd nd 0 nd nd 0 nd nd nd nd nd nd nd 1 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 4 0 nd nd nd 0 nd nd nd 1 nd nd 0 nd nd nd nd nd nd nd 1 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 5 0 nd nd nd 0 nd nd nd 1 nd nd 0 nd nd nd nd nd nd nd 1 1 nd nd nd nd nd nd nd nd nd nd nd nd nd 6 0 nd nd nd 0 nd nd nd 1 nd nd 0 nd nd nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 7 0 nd nd nd 0 nd nd nd 1 nd nd 0 nd nd nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 8 0 nd nd nd 0 nd nd nd 1 nd nd 0 nd nd nd nd nd nd nd 0 1 nd nd nd nd nd nd nd nd nd nd nd nd nd 9 0 nd nd nd 0 nd nd nd 0 nd nd 0 nd nd nd nd nd nd nd 0 0 nd nd nd nd std nd nd nd nd nd nd nd nd 10 1 nd nd nd 1 nd nd nd 1 nd nd 0 nd nd nd nd nd nd nd 0 1 nd nd nd nd 39 bad sequence nd nd nd nd nd nd nd 11 0 nd nd nd 1 nd nd nd 1 nd nd 1 nd nd nd nd nd nd nd 1 1 nd nd nd nd 30,40,51 Uncultured syndiniales EU793769.1 99 Amoebophrya sp. AY208893.1 92 Alveolata Dinoflagellate 12 0 nd nd nd 0 nd nd nd 0 nd nd 0 nd nd nd nd nd nd nd 0 0 nd nd nd nd std nd nd nd nd nd nd nd nd 13 0 nd nd nd 0 nd nd nd 0 nd nd 0 nd nd nd nd nd nd nd 0 1 nd nd nd nd 41 Charistephane fugiens AF293682.1 90 nd nd nd Metazoa Ctenophore 14 0 nd nd nd 0 nd nd nd 0 nd nd 0 nd nd nd nd nd nd nd 1 0 nd nd nd nd 31 Uncultured alveolate AF530539.1 75 Heterocapsa triquetra DQ887501.1 71 Alveolata Dinoflagellate 15 0 nd nd nd 0 nd nd nd 1 nd nd 0 nd nd nd nd nd nd nd 1 1 nd nd nd nd 32 eukaryote clone AJ402340.1 89 Gyrodinium fusiforme AB120002.1 84 Alveolata Dinoflagellate 16 1 nd nd nd 1 nd nd nd 1 nd nd 0 nd nd nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 17 0 nd nd nd 0 nd nd nd 1 nd nd 1 nd nd nd nd nd nd nd 1 1 nd nd nd nd 52,54 bad sequences nd nd nd nd nd nd nd 18 1 nd nd nd 1 nd nd nd 1 nd nd 1 nd nd nd nd nd nd nd 1 1 nd nd nd nd 55,57,58,18 Karlodinium micrum EF492506.1 99 nd nd nd Alveolata Dinoflagellate 19 0 nd nd nd 0 nd nd nd 0 nd nd 0 nd nd nd nd nd nd nd 1 1 nd nd nd nd nd nd nd nd nd nd nd nd nd 20 0 nd nd nd 0 nd nd nd 0 nd nd 0 nd nd nd nd nd nd nd 0 0 nd nd nd nd std nd nd nd nd nd nd nd nd 21 0 nd nd nd 0 nd nd nd 1 nd nd 1 nd nd nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 22 0 nd nd nd 0 nd nd nd 0 nd nd 0 nd nd nd nd nd nd nd 1 0 nd nd nd nd 34 Gymnodinium aureolum DQ779991.1 73 nd nd nd Alveolata Dinoflagellate 23 0 nd nd nd 0 nd nd nd 1 nd nd 1 nd nd nd nd nd nd nd 0 1 nd nd nd nd 42 Caenestheria lutraria EF189618.1 72 nd nd nd Metazoa Branchiopoda 24 0 nd nd nd 0 nd nd nd 0 nd nd 1 nd nd nd nd nd nd nd 1 1 nd nd nd nd 35 Gymnodinium beii U37406.1 68 nd nd nd Alveolata Dinoflagellate 25 0 nd nd nd 0 nd nd nd 1 nd nd 0 nd nd nd nd nd nd nd 0 0 nd nd nd nd 56 Ostreococcus tauri GQ426347.1 95 nd nd nd Chloroplastida Prasinophyte 26 0 nd nd nd 0 nd nd nd 0 nd nd 0 nd nd nd nd nd nd nd 0 1 nd nd nd nd 43 Uncultured eukaryote AY665120.1 75 Haloptilus ocellatus AY118069.2 75 Metazoa Copepod 27 0 nd nd nd 0 nd nd nd 0 nd nd 0 nd nd nd nd nd nd nd 0 1 nd nd nd nd 44 Pneumoderma atlantica DQ237970.1 95 nd nd nd Metazoa Mollusca 28 0 nd nd nd 0 nd nd nd 0 nd nd 1 nd nd nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 29 0 nd nd nd 0 nd nd nd 0 nd nd 0 nd nd nd nd nd nd nd 0 1 nd nd nd nd 45 Uncultured eukaryote AY665120.1 78 Haloptilus ocellatus AY118069.2 77 Metazoa Copepod 30 0 nd nd nd 0 nd nd nd 0 nd nd 0 nd nd nd nd nd nd nd 1 0 nd nd nd nd 36 Uncultured eukaryote AY665129.1 93 Ecbathyrion prolixicauda AY627024.1 91 Metazoa Copepod 31 0 nd nd nd 0 nd nd nd 0 nd nd 1 nd nd nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 32 0 nd nd nd 0 nd nd nd 1 nd nd 0 nd nd nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 33 0 nd nd nd 0 nd nd nd 0 nd nd 0 nd nd nd nd nd nd nd 1 1 nd nd nd nd nd nd nd nd nd nd nd nd nd 34 0 nd nd nd 0 nd nd nd 0 nd nd 0 nd nd nd nd nd nd nd 0 1 nd nd nd nd 46 Uncultured eukaryote AY665120.1 79 Haloptilus ocellatus AY118069.2 78 Metazoa Copepod 35 0 nd nd nd 0 nd nd nd 0 nd nd 1 nd nd nd nd nd nd nd 1 1 nd nd nd nd 47,38 Uncultured eukaryote AY665132.1 99 Lensia conoidea AY937360.1 99 Metazoa Cnidarian ========================= cell_type ------------------------- cyanobacteria ========================= cruise_id1 cruise_id2 year month day yrday_gmt lat lon ------------------------- AE0811 235 2008 05 30 151 31.6634 -64.1665 ========================= lane z10 z20 z25 z30 z40 z60 z70 z75 z80 z85 z90 z100 z110 z120 z130 z138 z140 z150 z180 fixed_trap_150m unfixed_trap_150m unfixed_trap_a_150m unfixed_trap_b_150m unfixed_trap_c_150m unfixed_trap_d_150m band_num id_closest_match accession_number_1 identity_pcent_1 id_closest_cultured_match accession_number_2 identity_pcent_2 taxon_1 taxon_2 ------------------------- 1 1 nd nd nd 0 nd nd nd 1 nd nd nd 1 nd nd nd nd nd nd nd 0 nd nd nd nd 1 Uncultured marine microorganism clone 40997AA_94 FJ189871.1 98 Aureoumbra lagunensis strain CCMP 1507 GQ231542.1 90 Stramenopiles Pelagophyte 2 0 nd nd nd 0 nd nd nd 0 nd nd nd 1 nd nd nd nd nd nd nd 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 3 0 nd nd nd 0 nd nd nd 0 nd nd nd 0 nd nd nd nd nd nd nd 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 4 1 nd nd nd 0 nd nd nd 1 nd nd nd 1 nd nd nd nd nd nd nd 0 nd nd nd nd 11, 14 Uncultured marine microorganism clone 40999AA_53 FJ190008.1 100 Eucampia antarctica isolate C34 FJ190008.1 88 Stramenopiles Diatom 5 1 nd nd nd 0 nd nd nd 1 nd nd nd 0 nd nd nd nd nd nd nd 0 nd nd nd nd 17 Uncultured bacterium clone 4C230494 EU803076.1 97 Synechococcus sp. KORDI-28 FJ497720.1 97 Cyanobacteria Synechococcus 6 1 nd nd nd 0 nd nd nd 0 nd nd nd 0 nd nd nd nd nd nd nd 0 nd nd nd nd 2 Uncultured bacterium clone S25_705 EF574361.1 91 Prochlorococcus marinus str. MIT 9515 CP000552.1 91 Cyanobacteria Prochlorococcus 7 1 nd nd nd 0 nd nd nd 0 nd nd nd 0 nd nd nd nd nd nd nd 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 8 1 nd nd nd 0 nd nd nd 0 nd nd nd 0 nd nd nd nd nd nd nd 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 9 1 nd nd nd 0 nd nd nd 1 nd nd nd 1 nd nd nd nd nd nd nd 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 10 0 nd nd nd 0 nd nd nd 0 nd nd nd 0 nd nd nd nd nd nd nd 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 11 0 nd nd nd 0 nd nd nd 0 nd nd nd 0 nd nd nd nd nd nd nd 1 nd nd nd nd 27 Uncultured marine eubacterium HstpL102 AF159644.1 97 Verrucomicrobia bacterium MS-B-100 FJ460141.1 96 Bacteria Verrucomicrobia 12 0 nd nd nd 0 nd nd nd 0 nd nd nd 0 nd nd nd nd nd nd nd 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 13 0 nd nd nd 0 nd nd nd 0 nd nd nd 0 nd nd nd nd nd nd nd 1 nd nd nd nd nd nd nd nd nd nd nd nd nd 14 1 nd nd nd 0 nd nd nd 1 nd nd nd 1 nd nd nd nd nd nd nd 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 15 1 nd nd nd 0 nd nd nd 0 nd nd nd 0 nd nd nd nd nd nd nd 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 16 1 nd nd nd 0 nd nd nd 0 nd nd nd 0 nd nd nd nd nd nd nd 1 nd nd nd nd 25 Uncultured marine eubacterium HstpL102 AF159644.1 91 Verrucomicrobia bacterium MS-B-100 FJ460141.1 90 Bacteria Verrucomicrobia 17 0 nd nd nd 0 nd nd nd 0 nd nd nd 0 nd nd nd nd nd nd nd 0 nd nd nd nd 17 Uncultured bacterium clone 4C230494 EU803076.1 97 Synechococcus sp. KORDI-28 FJ497720.1 97 Bacteria Verrucomicrobia 18 0 nd nd nd 0 nd nd nd 0 nd nd nd 0 nd nd nd nd nd nd nd 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 19 0 nd nd nd 0 nd nd nd 1 nd nd nd 0 nd nd nd nd nd nd nd 1 nd nd nd nd nd nd nd nd nd nd nd nd nd 20 1 nd nd nd 1 nd nd nd 1 nd nd nd 1 nd nd nd nd nd nd nd 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 21 1 nd nd nd 1 nd nd nd 1 nd nd nd 1 nd nd nd nd nd nd nd 0 nd nd nd nd 5, 32 Uncultured bacterium clone 20154U27 EU237289.1 99 Prochlorococcus marinus str. MIT 9312 CP000111.1 99 Cyanobacteria Prochlorococcus 22 1 nd nd nd 1 nd nd nd 1 nd nd nd 1 nd nd nd nd nd nd nd 0 nd nd nd nd 6, 24 Uncultured marine microorganism clone 40999AA_32 FJ189990.1 99 Prochlorococcus marinus str. MIT 9301 CP000576.1 99 Cyanobacteria Prochlorococcus 23 1 nd nd nd 1 nd nd nd 0 nd nd nd 1 nd nd nd nd nd nd nd 0 nd nd nd nd 8 Uncultured marine bacterium ENATL3 AF099993.1 97 Prochlorococcus marinus MED4 BX548174.1 97 Cyanobacteria Prochlorococcus 24 1 nd nd nd 1 nd nd nd 1 nd nd nd 1 nd nd nd nd nd nd nd 1 nd nd nd nd 7, 33 Synechococcus sp. KORDI-28 FJ497720.1 99 nd nd nd Cyanobacteria Synechococcus 25 1 nd nd nd 0 nd nd nd 0 nd nd nd 0 nd nd nd nd nd nd nd 0 nd nd nd nd 18, 34 Synechococcus sp. KORDI-28 FJ497720.1 93 nd nd nd Cyanobacteria Synechococcus 26 0 nd nd nd 1 nd nd nd 1 nd nd nd 1 nd nd nd nd nd nd nd 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 27 0 nd nd nd 0 nd nd nd 0 nd nd nd 0 nd nd nd nd nd nd nd 1 nd nd nd nd nd nd nd nd nd nd nd nd nd 28 1 nd nd nd 1 nd nd nd 1 nd nd nd 1 nd nd nd nd nd nd nd 1 nd nd nd nd nd nd nd nd nd nd nd nd nd 29 1 nd nd nd 0 nd nd nd 0 nd nd nd 0 nd nd nd nd nd nd nd 0 nd nd nd nd nd nd