# version: 15 April 2013 # [url links added 6/25/2013] # # Eukaryotic and Cyanobacteria DGGE band matrices and sequenced Band Matches # PI: S. Neuer (Arizona State U); J. Amacher # Phytoflux, BATS Station # 2008 - 2010 # ========================= cell_type ------------------------- eukaryote ========================= cruise_id1 cruise_id2 year month day yrday_gmt lat lon ------------------------- AE0907 245 2009 04 15 105 31.6655 -64.1645 ========================= lane z10 z20 z25 z30 z40 z60 z70 z75 z80 z85 z90 z100 z110 z120 z130 z138 z140 z150 z180 fixed_trap_150m unfixed_trap_150m unfixed_trap_a_150m unfixed_trap_b_150m unfixed_trap_c_150m unfixed_trap_d_150m band_num id_closest_match accession_number_1 identity_pcent_1 id_closest_cultured_match accession_number_2 identity_pcent_2 taxon_1 taxon_2 ------------------------- 1 0 nd nd nd nd 0 nd nd nd nd nd 1 0 nd nd nd nd nd nd nd nd nd nd nd nd 60 Uncultured Polycystinea clone AT8-54 AF530524.1 73 Collozoum pelagicum AF091146.1 74 Radiolaria Polycystinea 2 0 nd nd nd nd 0 nd nd nd nd nd 0 1 nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd 3 0 nd nd nd nd 0 nd nd nd nd nd 1 1 nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd 4 1 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd 5 1 nd nd nd nd 1 nd nd nd nd nd 1 1 nd nd nd nd nd nd nd nd nd nd nd nd 61,73 Uncultured eukaryote clone N4aD9 EU333111.1 81 Thraustochytriidae sp. HU1 DQ367047.1 75 Stramenopiles Stramenopile (other) 6 0 nd nd nd nd 0 nd nd nd nd nd 1 1 nd nd nd nd nd nd nd nd nd nd nd nd 62,74 bad sequence nd nd nd nd nd nd nd 7 1 nd nd nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd 8 1 nd nd nd nd 1 nd nd nd nd nd 1 1 nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd 9 0 nd nd nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd 10 0 nd nd nd nd 0 nd nd nd nd nd 0 1 nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd 11 1 nd nd nd nd 1 nd nd nd nd nd 1 1 nd nd nd nd nd nd nd nd nd nd nd nd 63 Uncultured eukaryote clone 1_64 EU087223.1 79 Thalassiosira weissflogii strain CCAP1085/1 FJ600728.1 78 Stramenopiles Diatom 12 1 nd nd nd nd 1 nd nd nd nd nd 1 1 nd nd nd nd nd nd nd nd nd nd nd nd 52,64 Laboea strobila clone AF399153.1 80 nd nd nd Alveolata Ciliate 13 1 nd nd nd nd 1 nd nd nd nd nd 1 1 nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd 14 1 nd nd nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd 53 Thalassiosira weissflogii strain CCAP1085/1 FJ600728.1 75 nd nd nd Stramenopiles Diatom 15 0 nd nd nd nd 1 nd nd nd nd nd 1 1 nd nd nd nd nd nd nd nd nd nd nd nd 65 Uncultured eukaryote gene for SSU AB275090.1 78 Pirsonia punctigera AJ561115.1 74 Stramenopiles Stramenopile (other) 16 1 nd nd nd nd 1 nd nd nd nd nd 1 1 nd nd nd nd nd nd nd nd nd nd nd nd 54 Colpodella edax AY234843.1 73 nd nd nd Alveolata Apicomplexa 17 1 nd nd nd nd 1 nd nd nd nd nd 1 1 nd nd nd nd nd nd nd nd nd nd nd nd 58,71 bad sequence nd nd nd nd nd nd nd 18 1 nd nd nd nd 0 nd nd nd nd nd 1 1 nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd 19 0 nd nd nd nd 1 nd nd nd nd nd 1 1 nd nd nd nd nd nd nd nd nd nd nd nd 72 Chrysamoeba tenera strain UTCC273 EF165102.1 78 nd nd nd Stramenopiles Chrysophyte 20 1 nd nd nd nd 0 nd nd nd nd nd 0 1 nd nd nd nd nd nd nd nd nd nd nd nd 55 Uncultured eukaryote clone E1aD92 EU333084.1 98 Lessardia elongata AF521100.1 86 Alveolata Dinoflagellate 21 1 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd 22 0 nd nd nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd 23 0 nd nd nd nd 1 nd nd nd nd nd 0 1 nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd 24 1 nd nd nd nd 1 nd nd nd nd nd 1 1 nd nd nd nd nd nd nd nd nd nd nd nd 56,66 Uncultured marine eukaryote clone SIF_4E8 EF527085.1 98 Gymnodinium sp. AF274260.1 97 Alveolata Dinoflagellate 25 1 nd nd nd nd 1 nd nd nd nd nd 1 1 nd nd nd nd nd nd nd nd nd nd nd nd 57 bad sequence nd nd nd nd nd nd nd 26 1 nd nd nd nd 0 nd nd nd nd nd 1 1 nd nd nd nd nd nd nd nd nd nd nd nd 59,67 Uncultured cercozoan isolate HetAus8 EU709167.1 76 Cercomonadidae environmental sample clone EF024284.1 77 Rhizaria Cercozoa 27 0 nd nd nd nd 1 nd nd nd nd nd 1 1 nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd 28 1 nd nd nd nd 0 nd nd nd nd nd 1 1 nd nd nd nd nd nd nd nd nd nd nd nd 68,75 Uncultured eukaryote clone AMT15_15B_17 EU780617.1 94 Lessardia elongata AF521100.1 83 Alveolata Dinoflagellate 29 0 nd nd nd nd 0 nd nd nd nd nd 0 1 nd nd nd nd nd nd nd nd nd nd nd nd 76 bad sequence nd nd nd nd nd nd nd 30 0 nd nd nd nd 0 nd nd nd nd nd 1 1 nd nd nd nd nd nd nd nd nd nd nd nd 69 Uncultured syndiniales clone EU793365.1 73 Amoebophrya sp. ex Prorocentrum micans AY208893.1 82 Alveolata Dinoflagellate 31 0 nd nd nd nd nd nd nd nd nd nd 1 1 nd nd nd nd nd nd nd nd nd nd nd nd 70 Uncultured eukaryote clone AMT15_1B_36 EU780604.1 96 Amphidinium semilunatum AF274256.1 86 Alveolata Dinoflagellate ========================= cell_type ------------------------- cyanobacteria ========================= cruise_id1 cruise_id2 year month day yrday_gmt lat lon ------------------------- AE0907 245 2009 04 15 105 31.6655 -64.1645 ========================= lane z10 z20 z25 z30 z40 z60 z70 z75 z80 z85 z90 z100 z110 z120 z130 z138 z140 z150 z180 fixed_trap_150m unfixed_trap_150m unfixed_trap_a_150m unfixed_trap_b_150m unfixed_trap_c_150m unfixed_trap_d_150m band_num id_closest_match accession_number_1 identity_pcent_1 id_closest_cultured_match accession_number_2 identity_pcent_2 taxon_1 taxon_2 ------------------------- 1 1 nd nd nd nd 1 nd nd nd nd nd 1 1 nd nd nd nd nd nd nd nd nd nd nd nd 31 Uncultured marine microorganism clone 40999AA_53 FJ190008.1 99 Aureococcus anophagefferens strain CCMP 1984 GQ231541.1 97 Stramenopiles Pelagophyte 2 1 nd nd nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd 3 1 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd 4 1 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd 5 1 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd 27 Uncultured cyanobacterium clone SHAB462 GQ348575.1 97 Dickieia ulvacea isolate C23 FJ002229.1 89 Stramenopiles Diatom 6 1 nd nd nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd 7 0 nd nd nd nd 0 nd nd nd nd nd 1 1 nd nd nd nd nd nd nd nd nd nd nd nd 32 Uncultured bacterium clone A23 GU066465.1 84 Dinophysis norvegica strain norvCC04 AF530388.2 83 Alveolata Dinoflagellate 8 1 nd nd nd nd 1 nd nd nd nd nd 1 1 nd nd nd nd nd nd nd nd nd nd nd nd 30 Uncultured Prochlorococcus sp. clone HF10_10C13 EU361177.1 73 Prochlorococcus marinus MED4 BX548174.1 73 Cyanobacteria Prochlorococcus 9 1 nd nd nd nd 1 nd nd nd nd nd 1 1 nd nd nd nd nd nd nd nd nd nd nd nd 33 Uncultured bacterium clone 2S-5m-1 GU062028.1 99 Prochlorococcus marinus str. MIT 9301 CP000576.1 99 Cyanobacteria Prochlorococcus 10 1 nd nd nd nd 1 nd nd nd nd nd 1 1 nd nd nd nd nd nd nd nd nd nd nd nd 38 Uncultured bacterium clone 2S-5m-1 GU062028.1 99 Prochlorococcus marinus str. MIT 9301 CP000576.1 99 Cyanobacteria Prochlorococcus 11 0 nd nd nd nd 0 nd nd nd nd nd 1 1 nd nd nd nd nd nd nd nd nd nd nd nd 41 Uncultured Prochlorococcus sp. clone HF130_33E01 EU361200.1 99 Prochlorococcus marinus str. MIT 9515 CP000552.1 99 Cyanobacteria Prochlorococcus 12 1 nd nd nd nd 1 nd nd nd nd nd 1 1 nd nd nd nd nd nd nd nd nd nd nd nd 39 Synechococcus sp. KORDI-28 FJ497720.1 99 Synechococcus sp. KORDI-28 FJ497720.1 99 Cyanobacteria Synechococcus 13 1 nd nd nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd