# version: 15 April 2013 # [url links added 6/25/2013] # # Eukaryotic and Cyanobacteria DGGE band matrices and sequenced Band Matches # PI: S. Neuer (Arizona State U); J. Amacher # Phytoflux, BATS Station # 2008 - 2010 # ========================= cell_type ------------------------- eukaryote ========================= cruise_id1 cruise_id2 year month day yrday_gmt lat lon ------------------------- AE0909 246 2009 05 16 136 31.6676 -64.1655 ========================= lane z10 z20 z25 z30 z40 z60 z70 z75 z80 z85 z90 z100 z110 z120 z130 z138 z140 z150 z180 fixed_trap_150m unfixed_trap_150m unfixed_trap_a_150m unfixed_trap_b_150m unfixed_trap_c_150m unfixed_trap_d_150m band_num id_closest_match accession_number_1 identity_pcent_1 id_closest_cultured_match accession_number_2 identity_pcent_2 taxon_1 taxon_2 ------------------------- 1 0 0 nd 0 nd nd nd nd nd nd nd nd nd nd nd 0 nd nd nd 1 0 nd nd nd nd 1 Acrosphaera sp. CR6A AF091148.1 91 nd nd nd Radiolaria Polycystinea 2 0 0 nd 0 nd nd nd nd nd nd nd nd nd nd nd 0 nd nd nd 1 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 3 0 0 nd 0 nd nd nd nd nd nd nd nd nd nd nd 0 nd nd nd 1 0 nd nd nd nd 2 Acrosphaera sp. CR6A AF091148.1 88 nd nd nd Radiolaria Polycystinea 4 0 0 nd 0 nd nd nd nd nd nd nd nd nd nd nd 0 nd nd nd 1 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 5 0 0 nd 0 nd nd nd nd nd nd nd nd nd nd nd 0 nd nd nd 1 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 6 0 0 nd 0 nd nd nd nd nd nd nd nd nd nd nd 0 nd nd nd 1 0 nd nd nd nd 3 Uncultured Polycystinea, clone BIO9_D8 FN598300.1 67 Collozoum inerme AY266295.1 71 Radiolaria Polycystinea 7 0 0 nd 0 nd nd nd nd nd nd nd nd nd nd nd 0 nd nd nd 1 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 8 0 0 nd 0 nd nd nd nd nd nd nd nd nd nd nd 1 nd nd nd 1 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 9 0 0 nd 0 nd nd nd nd nd nd nd nd nd nd nd 0 nd nd nd 1 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 10 0 0 nd 0 nd nd nd nd nd nd nd nd nd nd nd 0 nd nd nd 1 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 11 0 0 nd 0 nd nd nd nd nd nd nd nd nd nd nd 0 nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 12 0 0 nd 0 nd nd nd nd nd nd nd nd nd nd nd 0 nd nd nd 1 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 13 1 1 nd 1 nd nd nd nd nd nd nd nd nd nd nd 0 nd nd nd 0 0 nd nd nd nd 34 Liriope tetraphylla AY428814.1 98 nd nd nd Metazoa Cnidarian 14 0 0 nd 0 nd nd nd nd nd nd nd nd nd nd nd 1 nd nd nd 1 0 nd nd nd nd 4 Uncultured eukaryote clone SCM38C21 AY665132.1 99 Lensia conoidea AY937360.1 99 Metazoa Cnidarian 15 0 0 nd 0 nd nd nd nd nd nd nd nd nd nd nd 0 nd nd nd 0 1 nd nd nd nd nd nd nd nd nd nd nd nd nd 16 0 1 nd 1 nd nd nd nd nd nd nd nd nd nd nd 1 nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 17 0 0 nd 0 nd nd nd nd nd nd nd nd nd nd nd 1 nd nd nd 1 0 nd nd nd nd 21 bad sequence nd nd nd nd nd nd nd 18 0 0 nd 0 nd nd nd nd nd nd nd nd nd nd nd 0 nd nd nd 1 1 nd nd nd nd 20,5 Rhodotorula graminis strain WP1 EU563924.1 99 nd nd nd Fungi Basidiomycota 19 1 1 nd 1 nd nd nd nd nd nd nd nd nd nd nd 0 nd nd nd 0 0 nd nd nd nd 28 Uncultured syndiniales clone PROSOPE.EM-110m.170 EU793789.1 93 Amoebophrya sp. ex Scrippsiella sp. AF472555.1 88 Alveolata Dinoflagellate 20 0 0 nd 0 nd nd nd nd nd nd nd nd nd nd nd 0 nd nd nd 1 0 nd nd nd nd 6 Rhopalonema velatum EU247819.1 94 nd nd nd Metazoa Cnidarian 21 0 0 nd 1 nd nd nd nd nd nd nd nd nd nd nd 1 nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 22 0 1 nd 1 nd nd nd nd nd nd nd nd nd nd nd 0 nd nd nd 0 1 nd nd nd nd nd nd nd nd nd nd nd nd nd 23 0 0 nd 0 nd nd nd nd nd nd nd nd nd nd nd 1 nd nd nd 1 0 nd nd nd nd 7 Rhopalonema velatum EU247819.1 94 nd nd nd Metazoa Cnidarian 24 1 1 nd 1 nd nd nd nd nd nd nd nd nd nd nd 0 nd nd nd 0 0 nd nd nd nd 29 Uncultured syndiniales clone PROSOPE.EM-110m.173 EU793791.1 93 Amoebophrya sp. ex Prorocentrum micans AY208893.1 89 Alveolata Dinoflagellate 25 0 0 nd 0 nd nd nd nd nd nd nd nd nd nd nd 1 nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 26 0 0 nd 0 nd nd nd nd nd nd nd nd nd nd nd 0 nd nd nd 1 0 nd nd nd nd 8 Acrosphaera sp. CR6A AF091148.1 71 nd nd nd Radiolaria Polycystinea 27 0 0 nd 0 nd nd nd nd nd nd nd nd nd nd nd 1 nd nd nd 1 0 nd nd nd nd 9 Acanthometra sp. 3 813 GU246574.1 93 nd nd nd Radiolaria Polycystinea 28 0 0 nd 0 nd nd nd nd nd nd nd nd nd nd nd 0 nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 29 1 1 nd 1 nd nd nd nd nd nd nd nd nd nd nd 0 nd nd nd 0 0 nd nd nd nd 35 Uncultured eukaryote clone B19bE5 EU333056.1 80 Heterocapsa sp. HE04 FJ549370.1 80 Alveolata Dinoflagellate 30 0 0 nd 0 nd nd nd nd nd nd nd nd nd nd nd 1 nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 31 0 0 nd 0 nd nd nd nd nd nd nd nd nd nd nd 0 nd nd nd 1 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 32 0 0 nd 0 nd nd nd nd nd nd nd nd nd nd nd 1 nd nd nd 1 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 33 0 1 nd 0 nd nd nd nd nd nd nd nd nd nd nd 0 nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 34 1 1 nd 1 nd nd nd nd nd nd nd nd nd nd nd 0 nd nd nd 1 0 nd nd nd nd 30 Uncultured eukaryote clone B19bE5 EU333056.1 77 Karenia brevis strain CCMP2229 FJ587219.1 75 Alveolata Dinoflagellate 35 0 0 nd 1 nd nd nd nd nd nd nd nd nd nd nd 1 nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 36 0 0 nd 0 nd nd nd nd nd nd nd nd nd nd nd 0 nd nd nd 0 0 nd nd nd nd 40 Uncultured marine metazoan clone PROSOPE99.CTD17.55m.DGGE.190503_28 DQ001508.1 86 Rhincalanus nasutus AY335860.1 84 Metazoa Copepod 37 1 1 nd 1 nd nd nd nd nd nd nd nd nd nd nd 0 nd nd nd 1 0 nd nd nd nd 36 Uncultured eukaryote clone SCM37C61 AY664880.1 98 Gymnodinium sp. AF274260.1 98 Alveolata Dinoflagellate 38 1 1 nd 1 nd nd nd nd nd nd nd nd nd nd nd 1 nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 39 0 0 nd 0 nd nd nd nd nd nd nd nd nd nd nd 1 nd nd nd 1 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 40 1 1 nd 1 nd nd nd nd nd nd nd nd nd nd nd 0 nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 41 0 0 nd 0 nd nd nd nd nd nd nd nd nd nd nd 1 nd nd nd 1 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 42 0 1 nd 1 nd nd nd nd nd nd nd nd nd nd nd 1 nd nd nd 1 0 nd nd nd nd 11,31 Pentapharsodinium tyrrhenicum AF022201.1 88 nd nd nd Alveolata Dinoflagellate 43 1 0 nd 0 nd nd nd nd nd nd nd nd nd nd nd 0 nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 44 0 1 nd 1 nd nd nd nd nd nd nd nd nd nd nd 1 nd nd nd 0 0 nd nd nd nd 32 Uncultured marine dinoflagellate, clone BIO7_A2 FN598280.1 72 Gyrodinium fusiforme AB120002.1 72 Alveolata Dinoflagellate 45 1 0 nd 1 nd nd nd nd nd nd nd nd nd nd nd 0 nd nd nd 1 0 nd nd nd nd 12 Uncultured marine eukaryote clone NPK60_38 EU371323.1 93 Oikopleura labradoriensis FM244869.1 93 Metazoa Appendicularian 46 1 1 nd 1 nd nd nd nd nd nd nd nd nd nd nd 0 nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 47 0 0 nd 0 nd nd nd nd nd nd nd nd nd nd nd 1 nd nd nd 1 0 nd nd nd nd 23 Uncultured eukaryote clone SCM37C26 AY664921.1 84 Peridinium umbonatum strain FACHB 329 GU001637.1 84 Alveolata Dinoflagellate 48 1 1 nd 1 nd nd nd nd nd nd nd nd nd nd nd 1 nd nd nd 1 0 nd nd nd nd 24 Uncultured alveolate, clone C5 FN263032.1 76 Lepidodinium viride DQ499645.1 77 Alveolata Dinoflagellate 49 1 1 nd 0 nd nd nd nd nd nd nd nd nd nd nd 0 nd nd nd 1 0 nd nd nd nd 13 Styptosphaera sp. 2022, isolate: 2022 AB246686.1 76 nd nd nd Radiolaria Polycystinea 50 0 1 nd 1 nd nd nd nd nd nd nd nd nd nd nd 1 nd nd nd 0 0 nd nd nd nd 25 Uncultured eukaryote clone SCM37C61 AY664880.1 87 Heterocapsa triquetra isolate GSW0206-2 AY421787.1 87 Alveolata Dinoflagellate 51 0 0 nd 0 nd nd nd nd nd nd nd nd nd nd nd 0 nd nd nd 1 0 nd nd nd nd 14 Uncultured eukaryote clone SCM28C53 AY665108.1 66 Haloptilus ocellatus AY118069.2 65 Metazoa Copepod 52 0 0 nd 1 nd nd nd nd nd nd nd nd nd nd nd 0 nd nd nd 1 0 nd nd nd nd 15 Uncultured eukaryote clone AMT15_33B_20 EU780628.1 67 Gymnodinium aureolum strain GrAr01 DQ779991.1 66 Alveolata Dinoflagellate 53 0 0 nd 0 nd nd nd nd nd nd nd nd nd nd nd 1 nd nd nd 0 0 nd nd nd nd 26 Uncultured eukaryote clone SCM28C39 AY665129.1 99 Scambicornus sp. New Caledonia-RJH-2004 AY627011.1 92 Metazoa Copepod 54 0 0 nd 1 nd nd nd nd nd nd nd nd nd nd nd 0 nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 55 0 1 nd 0 nd nd nd nd nd nd nd nd nd nd nd 1 nd nd nd 1 0 nd nd nd nd 16 Paracyclopina nana FJ214952.1 78 nd nd nd Metazoa Copepod 56 0 0 nd 1 nd nd nd nd nd nd nd nd nd nd nd 1 nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 57 0 0 nd 1 nd nd nd nd nd nd nd nd nd nd nd 1 nd nd nd 1 0 nd nd nd nd 17,33 Clausocalanus ingens AF367718.1 99 nd nd nd Metazoa Copepod 58 0 0 nd 0 nd nd nd nd nd nd nd nd nd nd nd 1 nd nd nd 1 0 nd nd nd nd 27 Uncultured marine metazoan clone PROSOPE99.CTD17.5m.DGGE.190503_17 DQ001501.1 99 Stellicola sp. New Caledonia-RJH-2004 AY627004.1 93 Metazoa Copepod 59 0 0 nd 0 nd nd nd nd nd nd nd nd nd nd nd 0 nd nd nd 1 0 nd nd nd nd 18 Uncultured eukaryote clone NPK97_29 EU371350.1 97 Paracyclopina nana FJ214952.1 96 Metazoa Copepod 60 0 0 nd 0 nd nd nd nd nd nd nd nd nd nd nd 0 nd nd nd 1 0 nd nd nd nd 19 Uncultured eukaryote clone NPK97_29 EU371350.1 96 Paracyclopina nana FJ214952.1 96 Metazoa Copepod 61 0 1 nd 0 nd nd nd nd nd nd nd nd nd nd nd 1 nd nd nd 1 0 nd nd nd nd 38 Paracyclopina nana FJ214952.1 96 nd nd nd Metazoa Copepod ========================= cell_type ------------------------- cyanobacteria ========================= cruise_id1 cruise_id2 year month day yrday_gmt lat lon ------------------------- AE0909 246 2009 05 16 136 31.6676 -64.1655 ========================= lane z10 z20 z25 z30 z40 z60 z70 z75 z80 z85 z90 z100 z110 z120 z130 z138 z140 z150 z180 fixed_trap_150m unfixed_trap_150m unfixed_trap_a_150m unfixed_trap_b_150m unfixed_trap_c_150m unfixed_trap_d_150m band_num id_closest_match accession_number_1 identity_pcent_1 id_closest_cultured_match accession_number_2 identity_pcent_2 taxon_1 taxon_2 ------------------------- 1 1 0 nd 1 nd nd nd nd nd nd nd nd nd nd nd 1 nd nd nd nd nd nd nd nd nd 24 Plectonema sp. YRS 3 target=_blank"> EU310419.5 88 nd nd nd Cyanobacteria Oscillatoria 2 1 1 nd 1 nd nd nd nd nd nd nd nd nd nd nd 0 nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd 3 1 1 nd 1 nd nd nd nd nd nd nd nd nd nd nd 0 nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd 4 1 0 nd 0 nd nd nd nd nd nd nd nd nd nd nd 1 nd nd nd nd nd nd nd nd nd 23 Uncultured bacterium clone CE2-DCM-77 GU061659.1 98 Aureococcus anophagefferens strain CCMP 1984 GQ231541.1 96 Stramenopiles Pelagophyte 5 1 1 nd 0 nd nd nd nd nd nd nd nd nd nd nd 0 nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd 6 1 1 nd 1 nd nd nd nd nd nd nd nd nd nd nd 0 nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd 7 1 1 nd 1 nd nd nd nd nd nd nd nd nd nd nd 0 nd nd nd nd nd nd nd nd nd 21 Uncultured marine bacterium clone RS.Water.269 DQ417925.1 92 Fibrocapsa japonica strain CCMP 1661 DQ453516.1 100 Stramenopiles Raphidophyte 8 1 1 nd 1 nd nd nd nd nd nd nd nd nd nd nd 0 nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd 9 0 0 nd 1 nd nd nd nd nd nd nd nd nd nd nd 0 nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd 10 1 0 nd 1 nd nd nd nd nd nd nd nd nd nd nd 1 nd nd nd nd nd nd nd nd nd 25 Uncultured bacterium clone S25_1489 EF575145.1 95 Prochlorococcus marinus str. NATL1A CP000553.1 95 Cyanobacteria Prochlorococcus 11 1 1 nd 1 nd nd nd nd nd nd nd nd nd nd nd 1 nd nd nd nd nd nd nd nd nd 26 Prochlorococcus marinus str. NATL1A CP000553.1 98 nd nd nd Cyanobacteria Prochlorococcus 12 1 1 nd 1 nd nd nd nd nd nd nd nd nd nd nd 1 nd nd nd nd nd nd nd nd nd 27 Uncultured bacterium, clone firmicutes_North Atlantic gyre 34 AM706954.1 94 Prochlorococcus sp. PAC1 AF001471.1 98 Cyanobacteria Prochlorococcus 13 0 0 nd 0 nd nd nd nd nd nd nd nd nd nd nd 1 nd nd nd nd nd nd nd nd nd 28 Uncultured bacterium, clone firmicutes_North Atlantic gyre 34 AM706954.1 94 Prochlorococcus sp. PAC1 AF001471.1 98 Cyanobacteria Prochlorococcus 14 1 1 nd 1 nd nd nd nd nd nd nd nd nd nd nd 1 nd nd nd nd nd nd nd nd nd 7 Uncultured marine bacterium, clone SC0-136 FN435502.1 98 Synechococcus sp. KORDI-28 FJ497720.1 98 Cyanobacteria Synechococcus 15 1 1 nd 1 nd nd nd nd nd nd nd nd nd nd nd 0 nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd