# version: 15 April 2013 # [url links added 6/25/2013] # # Eukaryotic and Cyanobacteria DGGE band matrices and sequenced Band Matches # PI: S. Neuer (Arizona State U); J. Amacher # Phytoflux, BATS Station # 2008 - 2010 # ========================= cell_type ------------------------- eukaryote ========================= cruise_id1 cruise_id2 year month day yrday_gmt lat lon ------------------------- AE0916 248 2009 07 15 196 31.6388 -64.1690 ========================= lane z10 z20 z25 z30 z40 z60 z70 z75 z80 z85 z90 z100 z110 z120 z130 z138 z140 z150 z180 fixed_trap_150m unfixed_trap_150m unfixed_trap_a_150m unfixed_trap_b_150m unfixed_trap_c_150m unfixed_trap_d_150m band_num id_closest_match accession_number_1 identity_pcent_1 id_closest_cultured_match accession_number_2 identity_pcent_2 taxon_1 taxon_2 ------------------------- 1 0 nd nd nd nd 0 nd nd nd nd nd 0 nd 1 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 2 0 nd nd nd nd 0 nd nd nd nd nd 0 nd 1 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 3 0 nd nd nd nd 0 nd nd nd nd nd 0 nd 1 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 4 0 nd nd nd nd 0 nd nd nd nd nd 0 nd 1 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 5 0 nd nd nd nd 0 nd nd nd nd nd 1 nd 1 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 6 0 nd nd nd nd 0 nd nd nd nd nd 0 nd 1 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 7 0 nd nd nd nd 0 nd nd nd nd nd 0 nd 1 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 8 1 nd nd nd nd 0 nd nd nd nd nd 1 nd 1 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 9 0 nd nd nd nd 0 nd nd nd nd nd 0 nd 1 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 10 0 nd nd nd nd 0 nd nd nd nd nd 0 nd 1 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 11 0 nd nd nd nd 0 nd nd nd nd nd 0 nd 1 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 12 0 nd nd nd nd 0 nd nd nd nd nd 0 nd 1 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 13 1 nd nd nd nd 0 nd nd nd nd nd 0 nd 1 nd nd nd nd nd 1 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 14 1 nd nd nd nd 0 nd nd nd nd nd 0 nd 1 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 15 0 nd nd nd nd 0 nd nd nd nd nd 1 nd 1 nd nd nd nd nd 0 0 nd nd nd nd 51 bad sequence nd nd nd nd nd nd nd 16 1 nd nd nd nd 0 nd nd nd nd nd 0 nd 0 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 17 1 nd nd nd nd 0 nd nd nd nd nd 0 nd 1 nd nd nd nd nd 0 1 nd nd nd nd 52 bad sequence nd nd nd nd nd nd nd 18 1 nd nd nd nd 0 nd nd nd nd nd 0 nd 1 nd nd nd nd nd 0 0 nd nd nd nd 53 Uncultured eukaryote isolate DGGE gel band ELD9 GU188294.1 72 Lilyopsis fluoracantha AY919607.1 72 Metazoa Cnidarian 19 1 nd nd nd nd 1 nd nd nd nd nd 0 nd 1 nd nd nd nd nd 1 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 20 0 nd nd nd nd 0 nd nd nd nd nd 0 nd 0 nd nd nd nd nd 0 0 nd nd nd nd std nd nd nd nd nd nd nd nd 21 1 nd nd nd nd 1 nd nd nd nd nd 1 nd 1 nd nd nd nd nd 1 0 nd nd nd nd 67 Chelophyes appendiculata AY937345.1 99 nd nd nd Metazoa Cnidarian 22 1 nd nd nd nd 0 nd nd nd nd nd 0 nd 0 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 23 0 nd nd nd nd 0 nd nd nd nd nd 0 nd 1 nd nd nd nd nd 0 1 nd nd nd nd nd nd nd nd nd nd nd nd nd 24 0 nd nd nd nd 1 nd nd nd nd nd 0 nd 0 nd nd nd nd nd 0 0 nd nd nd nd 38 Uncultured syndiniales clone PROSOPE.EM-50m.114 EU793840.1 77 Amoebophrya sp. ex Ceratium lineatum AY260467.1 75 Alveolata Dinoflagellate 25 0 nd nd nd nd 0 nd nd nd nd nd 0 nd 0 nd nd nd nd nd 1 0 nd nd nd nd 68 Abylopsis tetragona AY937346.1 97 nd nd nd Metazoa Cnidarian 26 0 nd nd nd nd 0 nd nd nd nd nd 0 nd 0 nd nd nd nd nd 0 0 nd nd nd nd std nd nd nd nd nd nd nd nd 27 1 nd nd nd nd 0 nd nd nd nd nd 0 nd 1 nd nd nd nd nd 0 0 nd nd nd nd 29 not sequened nd nd nd nd nd nd nd 28 1 nd nd nd nd 0 nd nd nd nd nd 1 nd 1 nd nd nd nd nd 1 1 nd nd nd nd nd nd nd nd nd nd nd nd nd 29 1 nd nd nd nd 1 nd nd nd nd nd 0 nd 1 nd nd nd nd nd 0 0 nd nd nd nd 30 Uncultured syndiniales clone PROSOPE.ED-50m.205 EU793697.1 85 Amoebophrya sp. ex Gonyaulax polygramma strain GS0209a AY775285.1 83 Alveolata Dinoflagellate 30 1 nd nd nd nd 1 nd nd nd nd nd 1 nd 1 nd nd nd nd nd 0 0 nd nd nd nd 55 Uncultured eukaryote clone B19bD55 EU333053.1 91 Amoebophrya sp. ex Prorocentrum micans AY208893.1 87 Alveolata Dinoflagellate 31 0 nd nd nd nd 1 nd nd nd nd nd 0 nd 0 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 32 1 nd nd nd nd 0 nd nd nd nd nd 1 nd 1 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 33 1 nd nd nd nd 1 nd nd nd nd nd 0 nd 1 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 34 1 nd nd nd nd 1 nd nd nd nd nd 1 nd 1 nd nd nd nd nd 0 0 nd nd nd nd 31 Uncultured marine eukaryote clone E3-10 EU078296.1 74 Heterocapsa sp. HE04 FJ549370.1 74 Alveolata Dinoflagellate 35 0 nd nd nd nd 0 nd nd nd nd nd 1 nd 0 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 36 1 nd nd nd nd 1 nd nd nd nd nd 1 nd 1 nd nd nd nd nd 0 0 nd nd nd nd 42 Uncultured eukaryote clone PF1E3D12 HM226974.1 87 Katodinium rotundatum strain ccmp1542 DQ388464.1 87 Alveolata Dinoflagellate 37 1 nd nd nd nd 0 nd nd nd nd nd 1 nd 1 nd nd nd nd nd 1 0 nd nd nd nd 69 Uncultured marine eukaryote, clone NS371C36 AJ829791.1 92 Didymocyrtis tetrathalamus AB193605.1 91 Radiolaria Polycystinea 38 1 nd nd nd nd 1 nd nd nd nd nd 1 nd 1 nd nd nd nd nd 0 0 nd nd nd nd 32 bad sequence nd nd nd nd nd nd nd 39 0 nd nd nd nd 0 nd nd nd nd nd 0 nd 0 nd nd nd nd nd 1 0 nd nd nd nd 70 Uncultured marine eukaryote, clone NS371C36 AJ829791.1 97 Dictyocoryne profunda AB101540.1 96 Radiolaria Polycystinea 40 0 nd nd nd nd 0 nd nd nd nd nd 0 nd 0 nd nd nd nd nd 0 0 nd nd nd nd std nd nd nd nd nd nd nd nd 41 1 nd nd nd nd 0 nd nd nd nd nd 1 nd 0 nd nd nd nd nd 0 1 nd nd nd nd 33 Uncultured eukaryote clone RS1E1E08 HM227792.1 83 Gymnodinium aureolum DQ779991.1 82 Alveolata Dinoflagellate 42 1 nd nd nd nd 0 nd nd nd nd nd 1 nd 1 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 43 0 nd nd nd nd 0 nd nd nd nd nd 0 nd 0 nd nd nd nd nd 0 1 nd nd nd nd nd nd nd nd nd nd nd nd nd 44 1 nd nd nd nd 1 nd nd nd nd nd 1 nd 1 nd nd nd nd nd 0 0 nd nd nd nd 59 Heterocapsa triquetra GU594638.1 84 nd nd nd Alveolata Dinoflagellate 45 0 nd nd nd nd 0 nd nd nd nd nd 0 nd 1 nd nd nd nd nd 1 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 46 0 nd nd nd nd 1 nd nd nd nd nd 1 nd 1 nd nd nd nd nd 0 1 nd nd nd nd 60 Uncultured alveolate, clone 3c-F2 FN690153.1 75 Katodinium rotundatum strain ccmp1542 DQ388464.1 73 Alveolata Dinoflagellate 47 0 nd nd nd nd 0 nd nd nd nd nd 0 nd 0 nd nd nd nd nd 1 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 48 1 nd nd nd nd 0 nd nd nd nd nd 0 nd 1 nd nd nd nd nd 0 0 nd nd nd nd 61 Uncultured syndiniales clone BLENRinf2 7 EU785256.1 79 Symbiodinium sp. Y-6 AB275388.1 79 Alveolata Dinoflagellate 49 1 nd nd nd nd 1 nd nd nd nd nd 1 nd 1 nd nd nd nd nd 0 0 nd nd nd nd 34 Calocalanus plumulosus GU969146.1 89 nd nd nd Metazoa Copepod 50 0 nd nd nd nd 1 nd nd nd nd nd 1 nd 1 nd nd nd nd nd 0 0 nd nd nd nd 63 Uncultured eukaryote clone SCM28C4 AY665120.1 78 Haloptilus ocellatus AY118069.2 76 Metazoa Copepod 51 1 nd nd nd nd 1 nd nd nd nd nd 1 nd 1 nd nd nd nd nd 0 0 nd nd nd nd 48 bad sequence nd nd nd nd nd nd nd 52 1 nd nd nd nd 0 nd nd nd nd nd 1 nd 0 nd nd nd nd nd 1 0 nd nd nd nd 35 bad sequence nd nd nd nd nd nd nd 53 1 nd nd nd nd 1 nd nd nd nd nd 1 nd 1 nd nd nd nd nd 0 0 nd nd nd nd 36 Clausocalanus ingens AF367718.1 92 nd nd nd Metazoa Copepod 54 0 nd nd nd nd 0 nd nd nd nd nd 0 nd 1 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 55 1 nd nd nd nd 1 nd nd nd nd nd 1 nd 0 nd nd nd nd nd 0 0 nd nd nd nd 37 Uncultured marine eukaryote isolate DGGE gel band NM3-B33 FJ951095.1 73 Eudactylina pusilla isolate 10N3ep FJ447439.1 70 Metazoa Copepod 56 0 nd nd nd nd 0 nd nd nd nd nd 0 nd 1 nd nd nd nd nd 0 0 nd nd nd nd 66 Uncultured eukaryote clone SCM27C52 AY665125.1 98 Oithona similis GU969179.1 95 Metazoa Copepod 57 0 nd nd nd nd 0 nd nd nd nd nd 1 nd 0 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 58 0 nd nd nd nd 0 nd nd nd nd nd 0 nd 1 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 59 0 nd nd nd nd 0 nd nd nd nd nd 0 nd 1 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd ========================= cell_type ------------------------- cyanobacteria ========================= cruise_id1 cruise_id2 year month day yrday_gmt lat lon ------------------------- AE0916 248 2009 07 15 196 31.6388 -64.1690 ========================= lane z10 z20 z25 z30 z40 z60 z70 z75 z80 z85 z90 z100 z110 z120 z130 z138 z140 z150 z180 fixed_trap_150m unfixed_trap_150m unfixed_trap_a_150m unfixed_trap_b_150m unfixed_trap_c_150m unfixed_trap_d_150m band_num id_closest_match accession_number_1 identity_pcent_1 id_closest_cultured_match accession_number_2 identity_pcent_2 taxon_1 taxon_2 ------------------------- 1 0 nd nd nd nd 0 nd nd nd nd nd 0 nd 0 nd nd nd nd nd nd nd nd nd nd nd std nd nd nd nd nd nd nd nd 2 0 nd nd nd nd 0 nd nd nd nd nd 0 nd 1 nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd 3 1 nd nd nd nd 0 nd nd nd nd nd 1 nd 1 nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd 4 1 nd nd nd nd 1 nd nd nd nd nd 1 nd 1 nd nd nd nd nd nd nd nd nd nd nd 10 Uncultured prymnesiophyte C19847 HM565909.1 93 Chrysochromulina sp. MBIC10518 AB196967.1 93 Haptophyta Prymnesophyte 5 1 nd nd nd nd 1 nd nd nd nd nd 1 nd 1 nd nd nd nd nd nd nd nd nd nd nd 11 Uncultured prymnesiophyte C8704 HM565911.1 99 Dinophysis mitra AB199883.1 98 Alveolata Dinoflagellate 6 0 nd nd nd nd 1 nd nd nd nd nd 0 nd 0 nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd 7 1 nd nd nd nd 1 nd nd nd nd nd 1 nd 1 nd nd nd nd nd nd nd nd nd nd nd std,8 nd nd nd nd nd nd nd nd 8 0 nd nd nd nd 1 nd nd nd nd nd 1 nd 1 nd nd nd nd nd nd nd nd nd nd nd 19 Uncultured cyanobacterium clone DUNE-t8D2-95 HM117462.1 99 Prochlorococcus marinus MED4 BX548174.1 99 Cyanobacteria Prochlorococcus 9 0 nd nd nd nd 0 nd nd nd nd nd 1 nd 0 nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd 10 1 nd nd nd nd 1 nd nd nd nd nd 1 nd 0 nd nd nd nd nd nd nd nd nd nd nd 16 Uncultured marine bacterium clone D15_7_AuS_103 HM134441.1 99 Imantonia sp. MBIC10497 AB196965.1 99 Haptophyta Prymnesophyte 11 0 nd nd nd nd 0 nd nd nd nd nd 0 nd 0 nd nd nd nd nd nd nd nd nd nd nd std nd nd nd nd nd nd nd nd 12 1 nd nd nd nd 1 nd nd nd nd nd 1 nd 1 nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd 13 1 nd nd nd nd 1 nd nd nd nd nd 1 nd 1 nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd