# version: 15 April 2013 # [url links added 6/25/2013] # # Eukaryotic and Cyanobacteria DGGE band matrices and sequenced Band Matches # PI: S. Neuer (Arizona State U); J. Amacher # Phytoflux, BATS Station # 2008 - 2010 # ========================= cell_type ------------------------- eukaryote ========================= cruise_id1 cruise_id2 year month day yrday_gmt lat lon ------------------------- AE0926 252 2009 11 08 312 31.6670 -64.1557 ========================= lane z10 z20 z25 z30 z40 z60 z70 z75 z80 z85 z90 z100 z110 z120 z130 z138 z140 z150 z180 fixed_trap_150m unfixed_trap_150m unfixed_trap_a_150m unfixed_trap_b_150m unfixed_trap_c_150m unfixed_trap_d_150m band_num id_closest_match accession_number_1 identity_pcent_1 id_closest_cultured_match accession_number_2 identity_pcent_2 taxon_1 taxon_2 ------------------------- 1 0 nd nd nd 0 nd nd nd nd nd 1 nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 2 1 nd nd nd 1 nd nd nd nd nd 1 nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd 97 nd nd nd nd nd nd nd nd 3 1 nd nd nd 1 nd nd nd nd nd 1 nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd 99 Uncultured eukaryote clone SCM15C3 AY665059.1 90 Philasterides dicentrarchi strain SNUSS001 GU572375.1 86 Alveolata Ciliate 4 0 nd nd nd 0 nd nd nd nd nd 0 nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd 98 Uncultured marine eukaryote clone NS371D46 AJ829801.1 97 Karlodinium micrum isolate NEPCC734 EF492506.1 85 Alveolata Dinoflagellate 5 1 nd nd nd 1 nd nd nd nd nd 1 nd nd 1 nd nd nd nd nd 1 0 nd nd nd nd 100, 101 Uncultured eukaryote clone N4aD9 EU333111.1 98 Thraustochytriidae sp. HU1 DQ367047.1 90 Stramenopiles Labyrinthulida 6 0 nd nd nd 0 nd nd nd nd nd 0 nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 7 1 nd nd nd 0 nd nd nd nd nd 1 nd nd 0 nd nd nd nd nd 1 0 nd nd nd nd 102 nd nd nd nd nd nd nd nd 8 1 nd nd nd 0 nd nd nd nd nd 0 nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 9 0 nd nd nd 0 nd nd nd nd nd 0 nd nd 1 nd nd nd nd nd 1 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 10 1 nd nd nd 1 nd nd nd nd nd 1 nd nd 1 nd nd nd nd nd 1 0 nd nd nd nd 77, 103 Uncultured eukaryote clone SSRPD87 EF172989.1 91 Amoebophrya sp. ex Gonyaulax polygramma strain GS0209a AY775285.1 86 Alveolata Dinoflagellate 11 1 nd nd nd 1 nd nd nd nd nd 1 nd nd 0 nd nd nd nd nd 1 0 nd nd nd nd 78 Uncultured marine eukaryote AJ829785.1 72 Homalogastra setosa isolate GT1 clone 15 EF158848.1 74 Alveolata Ciliate 12 1 nd nd nd 1 nd nd nd nd nd 1 nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd 104 Uncultured marine eukaryote clone BTPL20040810.0017 FJ222092.1 69 Heterocapsa rotundata strain CCCM 680 AF274267.1 69 Alveolata Dinoflagellate 13 0 nd nd nd 0 nd nd nd nd nd 0 nd nd 0 nd nd nd nd nd 1 0 nd nd nd nd 79 Uncultured marine eukaryote clone NS371B AJ829785.1 80 Paratetrahymena sp. JJG-2008 EU744176.1 78 Alveolata Ciliate 14 1 nd nd nd 1 nd nd nd nd nd 1 nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd 105 Uncultured eukaryote clone SCM37C10 AY664999.1 87 Colpodella edax AY234843.1 83 Alveolata Apicomplexa 15 1 nd nd nd 1 nd nd nd nd nd 0 nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd 106 Uncultured marine alveolate clone PROSOPE99.CTD17.55m.TTGE.231203_45 DQ001450.1 71 Colpodella edax AY234843.1 71 Alveolata Apicomplexa 16 1 nd nd nd 0 nd nd nd nd nd 1 nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 17 0 nd nd nd 0 nd nd nd nd nd 0 nd nd 1 nd nd nd nd nd 1 1 nd nd nd nd 80, 87, 107 nd nd nd nd nd nd nd nd 18 0 nd nd nd 0 nd nd nd nd nd 0 nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd std nd nd nd nd nd nd nd nd 19 1 nd nd nd 1 nd nd nd nd nd 1 nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd 108, 134 Uncultured Polycystinea clone Biosope_T33.044 FJ537313.1 88 Larcopyle butschlii AB246693.1 82 Radiolaria Polycystinea 20 0 nd nd nd 0 nd nd nd nd nd 0 nd nd 0 nd nd nd nd nd 1 0 nd nd nd nd 81 Uncultured Oligotrichia clone BIO2_B1 FN598239.1 67 Strombidium sp. SYK-2009 clone 44 FJ543106.1 66 Alveolata Ciliate 21 0 nd nd nd 0 nd nd nd nd nd 0 nd nd 0 nd nd nd nd nd 0 1 nd nd nd nd 88 nd nd nd nd nd nd nd nd 22 1 nd nd nd 0 nd nd nd nd nd 0 nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 23 1 nd nd nd 1 nd nd nd nd nd 1 nd nd 0 nd nd nd nd nd 1 1 nd nd nd nd 89, 124, 135 Uncultured alveolate clone BL010320.28 DQ186536.1 91 Duboscquella sp. Hamana/2003 AB295041.1 83 Alveolata Dinoflagellate 24 0 nd nd nd 0 nd nd nd nd nd 0 nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd std nd nd nd nd nd nd nd nd 25 0 nd nd nd 0 nd nd nd nd nd 1 nd nd 1 nd nd nd nd nd 1 0 nd nd nd nd 82 nd nd nd nd nd nd nd nd 26 1 nd nd nd 1 nd nd nd nd nd 0 nd nd 1 nd nd nd nd nd 0 1 nd nd nd nd 90, 125, 136 Uncultured eukaryote clone PF1E3C02 HM226976.1 81 Amoebophrya sp. ex Gonyaulax polygramma strain GS0209a AY775285.1 78 Alveolata Dinoflagellate 27 0 nd nd nd 0 nd nd nd nd nd 1 nd nd 0 nd nd nd nd nd 0 1 nd nd nd nd 91 Uncultured eukaryote clone RS1E5A07 HM228009.1 76 Goniochloris sculpta FJ858970.1 69 Stramenopiles Xanthophyceae 28 1 nd nd nd 1 nd nd nd nd nd 1 nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd 126 Uncultured eukaryote clone PF1E3C02 HM226976.1 90 Amoebophrya sp. ex Prorocentrum micans AY208893.1 90 Alveolata Dinoflagellate 29 0 nd nd nd 0 nd nd nd nd nd 0 nd nd 1 nd nd nd nd nd 0 1 nd nd nd nd 92 Uncultured alveolate clone AT4-21 AF530532.1 85 Amoebophrya sp. ex Prorocentrum micans AY208893.1 81 Alveolata Dinoflagellate 30 0 nd nd nd 0 nd nd nd nd nd 0 nd nd 0 nd nd nd nd nd 1 0 nd nd nd nd 83 Uncultured eukaryote clone SSRPB59 EF172842.1 85 Hexaconus serratus AB178588.1 79 Radiolaria Acantharea 31 0 nd nd nd 0 nd nd nd nd nd 1 nd nd 0 nd nd nd nd nd 0 1 nd nd nd nd 93 Uncultured marine Syndiniales clone BIO7_ FN598291.1 94 Duboscquella sp. Hamana/2003 AB295041.1 87 Alveolata Dinoflagellate 32 0 nd nd nd 0 nd nd nd nd nd 1 nd nd 0 nd nd nd nd nd 1 0 nd nd nd nd 84 Uncultured eukaryote clone SSRPB59 EF172842.1 98 Acanthometra sp. 3 813 GU246574.1 89 Radiolaria Acantharea 33 1 nd nd nd 1 nd nd nd nd nd 1 nd nd 1 nd nd nd nd nd 1 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 34 1 nd nd nd 1 nd nd nd nd nd 0 nd nd 1 nd nd nd nd nd 0 1 nd nd nd nd nd nd nd nd nd nd nd nd nd 35 0 nd nd nd 0 nd nd nd nd nd 1 nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 36 1 nd nd nd 1 nd nd nd nd nd 0 nd nd 1 nd nd nd nd nd 1 1 nd nd nd nd 109, 137 Uncultured eukaryote clone PF1E3C02 HM226976.1 83 Heterocapsa rotundata strain CCCM 680 AF274267.1 81 Alveolata Dinoflagellate 37 0 nd nd nd 0 nd nd nd nd nd 0 nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd std nd nd nd nd nd nd nd nd 38 1 nd nd nd 1 nd nd nd nd nd 1 nd nd 0 nd nd nd nd nd 1 0 nd nd nd nd 127, 138 Uncultured marine metazoan clone PROSOPE99.CTD17.55m.DGGE.190503_28 DQ001508.1 93 Calocalanus plumulosus GU969146.1 91 Metazoa Copepod 39 0 nd nd nd 1 nd nd nd nd nd 1 nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 40 1 nd nd nd 1 nd nd nd nd nd 0 nd nd 0 nd nd nd nd nd 1 1 nd nd nd nd 85 Uncultured eukaryote clone SSRPB59 EF172842.1 99 Acanthometra sp. 3 813 GU246574.1 90 Radiolaria Acantharea 41 1 nd nd nd 1 nd nd nd nd nd 1 nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd 120 Uncultured eukaryote clone B19bE11 EU333058.1 77 Heterocapsa rotundata strain CCCM 680 AF274267.1 77 Alveolata Dinoflagellate 42 1 nd nd nd 1 nd nd nd nd nd 1 nd nd 1 nd nd nd nd nd 0 1 nd nd nd nd 94, 110, 121 Uncultured eukaryote clone SCM15C18 AY664923.1 85 Gymnodinium sp. AF274260.1 83 Alveolata Dinoflagellate 43 1 nd nd nd 1 nd nd nd nd nd 1 nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd 122 nd nd nd nd nd nd nd nd 44 1 nd nd nd 1 nd nd nd nd nd 1 nd nd 1 nd nd nd nd nd 0 1 nd nd nd nd 95, 111 Uncultured alveolate clone 3-E1 FN690349.1 88 Lessardia elongata AF521100.1 82 Alveolata Dinoflagellate 45 0 nd nd nd 0 nd nd nd nd nd 0 nd nd 0 nd nd nd nd nd 1 0 nd nd nd nd 86 Uncultured eukaryote clone SSRPB70 EF172841.1 93 Acanthometra sp. 3 813 GU246574.1 85 Radiolaria Acantharea 46 0 nd nd nd 0 nd nd nd nd nd 0 nd nd 1 nd nd nd nd nd 0 1 nd nd nd nd 96, 112 Uncultured marine metazoan clone PRTBE7504 HM800085.1 95 Scambicornus sp. New Caledonia-RJH-2004 AY627011.1 92 Metazoa Copepod 47 1 nd nd nd 0 nd nd nd nd nd 1 nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 48 1 nd nd nd 1 nd nd nd nd nd 0 nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd 128, 139 Calocalanus plumulosus GU969146.1 83 nd nd nd Metazoa Copepod 49 0 nd nd nd 0 nd nd nd nd nd 1 nd nd 1 nd nd nd nd nd 1 1 nd nd nd nd 113 Uncultured eukaryote clone GPW3C3 GU072421.1 86 Astrosphaera hexagonalis AB490706.1 85 Radiolaria Polycystinea 50 0 nd nd nd 1 nd nd nd nd nd 1 nd nd 1 nd nd nd nd nd 0 1 nd nd nd nd 114, 123, 129 Uncultured eukaryote clone SCM28C4 AY665120.1 87 Haloptilus ocellatus AY118069.2 86 Metazoa Copepod 51 0 nd nd nd 1 nd nd nd nd nd 0 nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd 130 Paracalanus aculeatus GU969180.1 92 nd nd nd Metazoa Copepod 52 1 nd nd nd 0 nd nd nd nd nd 1 nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd 115, 140 Paracalanus aculeatus GU969180.1 100 nd nd nd Metazoa Copepod 53 1 nd nd nd 1 nd nd nd nd nd 1 nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd 131, 141 Uncultured eukaryote clone SCM27C27 AY665124.1 99 nd nd nd Metazoa Copepod 54 0 nd nd nd 0 nd nd nd nd nd 1 nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd 116 Calocalanus plumulosus GU969146.1 85 nd nd nd Metazoa Copepod 55 0 nd nd nd 0 nd nd nd nd nd 0 nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd 117 nd nd nd nd nd nd nd nd 56 1 nd nd nd 0 nd nd nd nd nd 0 nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 57 1 nd nd nd 1 nd nd nd nd nd 1 nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd 132 nd nd nd nd nd nd nd nd 58 1 nd nd nd 0 nd nd nd nd nd 0 nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 59 0 nd nd nd 0 nd nd nd nd nd 0 nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd 118 Uncultured eukaryote clone SCM38C4 AY665068.1 96 nd nd nd Rhizaria Cercozoa 60 1 nd nd nd 1 nd nd nd nd nd 0 nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd 133 nd nd nd nd nd nd nd nd 61 1 nd nd nd 0 nd nd nd nd nd 1 nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 62 0 nd nd nd 0 nd nd nd nd nd 1 nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd 119 nd nd nd nd nd nd nd nd ========================= cell_type ------------------------- cyanobacteria ========================= cruise_id1 cruise_id2 year month day yrday_gmt lat lon ------------------------- AE0926 252 2009 11 08 312 31.6670 -64.1557 ========================= lane z10 z20 z25 z30 z40 z60 z70 z75 z80 z85 z90 z100 z110 z120 z130 z138 z140 z150 z180 fixed_trap_150m unfixed_trap_150m unfixed_trap_a_150m unfixed_trap_b_150m unfixed_trap_c_150m unfixed_trap_d_150m band_num id_closest_match accession_number_1 identity_pcent_1 id_closest_cultured_match accession_number_2 identity_pcent_2 taxon_1 taxon_2 ------------------------- 1 0 nd nd nd 0 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd nd nd nd nd nd nd std nd nd nd nd nd nd nd nd 2 0 nd nd nd 0 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd 3 0 nd nd nd 1 nd nd nd 1 nd nd nd nd 0 nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd 4 0 nd nd nd 0 nd nd nd 1 nd nd nd nd 0 nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd 5 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 0 nd nd nd nd nd nd nd nd nd nd nd 15 Uncultured bacterium clone SW32 HQ288764.1 98 Prochlorococcus marinus str. MIT 9215 CP000825.1 98 Cyanobacteria nd 6 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 0 nd nd nd nd nd nd nd nd nd nd nd 16 Uncultured bacterium clone SW33 HQ288764.2 98 Prochlorococcus marinus str. MIT 9216 CP000825.2 98 Cyanobacteria nd 7 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 0 nd nd nd nd nd nd nd nd nd nd nd std nd nd nd nd nd nd Cyanobacteria nd 8 0 nd nd nd 0 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd 9 0 nd nd nd 0 nd nd nd 0 nd nd nd nd 1 nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd 10 1 nd nd nd 1 nd nd nd 0 nd nd nd nd 1 nd nd nd nd nd nd nd nd nd nd nd 40, std Uncultured bacterium clone 2-31 GU567161.1 97 Synechococcus sp. Oli31 nd 97 Cyanobacteria nd 11 0 nd nd nd 0 nd nd nd 0 nd nd nd nd 1 nd nd nd nd nd nd nd nd nd nd nd 41 Uncultured bacterium clone 2-31 GU567161.1 96 Synechococcus sp. Oli31 nd 96 Cyanobacteria nd 12 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd nd nd nd nd nd nd 12 Uncultured bacterium clone 4C229910 EU802564.1 90 Cyanobium sp. MS-B-68 FJ460137.1 89 Cyanobacteria nd 13 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd nd nd nd nd nd nd 13 Uncultured bacterium clone 6C233315 EU805313.1 92 Prochlorococcus marinus str. MIT 9215 CP000825.1 92 Cyanobacteria nd