# version: 15 April 2013 # [url links added 6/25/2013] # # Eukaryotic and Cyanobacteria DGGE band matrices and sequenced Band Matches # PI: S. Neuer (Arizona State U); J. Amacher # Phytoflux, BATS Station # 2008 - 2010 # ========================= cell_type ------------------------- eukaryote ========================= cruise_id1 cruise_id2 year month day yrday_gmt lat lon ------------------------- AE0928 253 2009 12 09 343 31.6005 -64.1020 ========================= lane z10 z20 z25 z30 z40 z60 z70 z75 z80 z85 z90 z100 z110 z120 z130 z138 z140 z150 z180 fixed_trap_150m unfixed_trap_150m unfixed_trap_a_150m unfixed_trap_b_150m unfixed_trap_c_150m unfixed_trap_d_150m band_num id_closest_match accession_number_1 identity_pcent_1 id_closest_cultured_match accession_number_2 identity_pcent_2 taxon_1 taxon_2 ------------------------- 1 1 nd nd nd 0 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 2 1 nd nd nd 0 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 3 1 nd nd nd 0 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 4 1 nd nd nd 0 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 5 0 nd nd nd 0 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 6 0 nd nd nd 1 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 7 0 nd nd nd 0 nd nd nd 0 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 8 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd 1 Uncultured marine eukaryote clone NW414.24 DQ120009.1 77 Nolandia sp. WYG07050702 FJ858215.1 74 Alveolata Ciliate 9 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd 2 Uncultured eukaryote clone E-G1_1 HM628677.1 73 Strombidium sp. SBB99-1 AY143565.1 72 Alveolata Ciliate 10 1 nd nd nd 0 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 11 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd 3 Uncultured eukaryote clone SCM15C3 AY665059.1 89 Schizocaryum dogieli AF527756.1 85 Alveolata Ciliate 12 0 nd nd nd 0 nd nd nd 0 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd 4 Uncultured marine eukaryote AJ829801.1 95 Karlodinium micrum isolate NEPCC734 EF492506.1 84 Alveolata Dinoflagellate 13 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 1 0 nd nd nd nd 59 Uncultured eukaryote clone SCM28C52 AY665005.1 82 Jadwigia applanata strain CCAC0021 EF058240.1 76 Alveolata Dinoflagellate 14 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd 6 Uncultured eukaryote clone BLENRD2T4 11 EU785297.1 87 Thraustochytriidae sp. HU1 DQ367047.1 81 Stramenopiles Labyrinthulida 15 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 1 0 nd nd nd nd 8 Uncultured ciliate clone LC22_5EP_48 DQ504328.1 94 Gymnodinioides pitelkae EU503534.1 93 Alveolata Ciliate 16 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 17 0 nd nd nd 0 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd 1 0 nd nd nd nd 60 Uncultured marine alveolate DQ001417.1 76 Gymnodinium sp. UTEX1653 EF492494.1 70 Alveolata Dinoflagellate 18 0 nd nd nd 0 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd 1 0 nd nd nd nd 61 Uncultured marine metazoan clone PRTBE7437 HM800056.1 98 Chelophyes appendiculata AY937346.1 98 Metazoa Cnidarian 19 1 nd nd nd 0 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 0 1 nd nd nd nd 11 Uncultured marine eukaryote clone cLA13A03 EU446395.1 81 Homalogastra setosa isolate GT1 clone 15 EF158848.1 78 Alveolata Ciliate 20 0 nd nd nd 0 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd 1 0 nd nd nd nd 62 Uncultured eukaryote isolate GU188344.1 78 Gilia reticulata DQ080013.1 76 Metazoa Cnidarian 21 0 nd nd nd 0 nd nd nd 0 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd 12 Uncultured marine eukaryote AJ829801.1 94 Sorogena stoianovitchae clone 3 AF300287.1 90 Alveolata Ciliate 22 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd 13 Uncultured alveolate FN690169.1 81 Heterocapsa triquetra GU594638.1 80 Alveolata Dinoflagellate 23 0 nd nd nd 1 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd 1 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 24 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd 16 Uncultured Scuticociliatia FN598289.1 94 Homalogastra setosa isolate GT1 EF158848.1 89 Alveolata Ciliate 25 0 nd nd nd 0 nd nd nd 0 nd nd nd nd 1 nd nd nd nd nd 0 1 nd nd nd nd 17 Uncultured eukaryote clone SCM37C10 AY664999.1 76 Karlodinium sp. KAMS0708 FN357291.1 73 Alveolata Dinoflagellate 26 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd 15 Uncultured alveolate FN689940.1 73 Tiputinia foetida 18S FJ215764.1 68 Chloroplastida Streptophyte 27 0 nd nd nd 0 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd 0 1 nd nd nd nd 52 bad sequence nd nd nd nd nd nd nd 28 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd 19 Uncultured eukaryote clone NPKS2_101 EU371395.1 92 Strombidium sp. SNB99-2 AY143564.1 92 Alveolata Ciliate 29 0 nd nd nd 0 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd std nd nd nd nd nd nd nd nd 30 1 nd nd nd 1 nd nd nd 0 nd nd nd nd 1 nd nd nd nd nd 1 1 nd nd nd nd 63 Uncultured marine metazoan clone PRTBE7497 HM800083.1 97 Lensia conoidea AY937360.1 97 Metazoa Cnidarian 31 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 0 1 nd nd nd nd 21 Uncultured marine alveolate clone DQ001416.1 90 Woloszynskia cincta FR690459.1 80 Alveolata Dinoflagellate 32 0 nd nd nd 1 nd nd nd 0 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd 23 Uncultured marine metazoan clone HM799974.1 93 Aglaura hemistoma EU247820.1 94 Metazoa Cnidarian 33 0 nd nd nd 0 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd std nd nd nd nd nd nd nd nd 34 0 nd nd nd 0 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd 0 1 nd nd nd nd 54 Uncultured eukaryote isolate DGGE gel band MS_euk1_23 FJ785907.1 74 Roscoffia capitata AF521101.1 71 Alveolata Dinoflagellate 35 1 nd nd nd 1 nd nd nd 0 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd 25 Uncultured marine Prorocentrales FJ431312.1 83 Karlodinium sp. KAMS0708 FN357291.1 82 Alveolata Dinoflagellate 36 0 nd nd nd 0 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd 0 1 nd nd nd nd 55 Uncultured ciliate clone LC23_4EP_1 DQ504329.1 96 Duboscquella sp. Hamana AB295041.1 88 Alveolata Dinoflagellate 37 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd 26 Uncultured marine alveolate DQ001451.1 74 Amoebophrya sp. ex Ceratium lineatum AY260467.1 75 Alveolata Dinoflagellate 38 0 nd nd nd 0 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd 1 1 nd nd nd nd nd nd nd nd nd nd nd nd nd 39 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 0 nd nd nd nd nd 0 1 nd nd nd nd 27 Uncultured marine eukaryote clone UEPACLp4 AY129047.1 87 Amoebophrya sp. ex Gymnodinium instriatum AF472554.1 83 Alveolata Dinoflagellate 40 0 nd nd nd 0 nd nd nd 0 nd nd nd nd 1 nd nd nd nd nd 0 1 nd nd nd nd 28 Uncultured eukaryote clone RS1E4D01 HM227947.1 71 Katodinium rotundatum strain ccmp1542 DQ388464.1 71 Alveolata Dinoflagellate 41 0 nd nd nd 1 nd nd nd 1 nd nd nd nd 0 nd nd nd nd nd 1 1 nd nd nd nd 64 Uncultured marine alveolate DQ001417.1 83 Gymnodiniaceae sp. Shiwha Bay/2009 FR720082.1 76 Alveolata Dinoflagellate 42 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd 31 Uncultured eukaryote clone RS1E4D01 HM227947.1 89 Heterocapsa sp. HE04 FJ549370.1 88 Alveolata Dinoflagellate 43 0 nd nd nd 0 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd std nd nd nd nd nd nd nd nd 44 0 nd nd nd 0 nd nd nd 0 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 45 0 nd nd nd 0 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd 0 1 nd nd nd nd 32 Uncultured eukaryote clone SSRPB16 EF172796.1 90 Amoebophrya sp. ex Prorocentrum micans AY208893.1 81 Alveolata Dinoflagellate 46 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 1 1 nd nd nd nd 34 Uncultured marine eukaryote clone ANT-Roth-MECL-96 FJ985910.1 85 Gyrodinium cf. gutrula FN669511.1 85 Alveolata Dinoflagellate 47 0 nd nd nd 0 nd nd nd 0 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 48 0 nd nd nd 0 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd 1 1 nd nd nd nd 56 Uncultured alveolate clone PRTBE7408 HM799867.1 71 Karenia mikimotoi strain CCMP429 FJ587220.1 78 Alveolata Dinoflagellate 49 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd 35 Uncultured eukaryote clone SCM28C3 AY665130.1 76 Kroyeria sp. RJH-2006 DQ538499.1 77 Metazoa Copepod 50 0 nd nd nd 0 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd 1 0 nd nd nd nd 65 Uncultured Polycystinea FN598286.1 93 Arachnosphaera myriacantha AB490705.1 92 Radiolaria Polycystinea 51 0 nd nd nd 0 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd 0 1 nd nd nd nd nd nd nd nd nd nd nd nd nd 52 0 nd nd nd 0 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd 1 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 53 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 0 nd nd nd nd nd 0 1 nd nd nd nd 37 Uncultured marine metazoan DQ001508.1 97 Calocalanus plumulosus GU969146.1 95 Metazoa Copepod 54 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 0 1 nd nd nd nd 38,40 Uncultured eukaryote clone SCM28C7 AY665122.1 98 Haloptilus ocellatus AY118069.2 94 Metazoa Copepod 55 0 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd 41 Uncultured eukaryote clone GPS1A6 GU072195.1 82 Woloszynskia cincta FR690459.1 80 Alveolata Dinoflagellate 56 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 1 0 nd nd nd nd 43 Uncultured eukaryote clone SCM27C27 AY665124.1 96 Paracalanus aculeatus GU969180.1 95 Metazoa Copepod 57 0 nd nd nd 1 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd 1 1 nd nd nd nd 45,57 Uncultured eukaryote clone SCM28C7 AY665122.1 97 Haloptilus ocellatus AY118069.2 96 Metazoa Copepod 58 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 0 nd nd nd nd nd 1 0 nd nd nd nd 47 Uncultured marine metazoan clone DQ001504.1 97 Clausocalanus furcatus GU969200.1 97 Metazoa Copepod 59 0 nd nd nd 0 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd 0 1 nd nd nd nd 58 Uncultured eukaryote clone SCM28C7 AY665122.1 90 Lucicutia flavicornis GU969154.1 90 Metazoa Copepod 60 0 nd nd nd 0 nd nd nd 0 nd nd nd nd 1 nd nd nd nd nd 0 1 nd nd nd nd 49 Uncultured eukaryote clone SCM38C4 AY665068.1 87 Mesotaenium cf. chlamydosporum AJ553923.1 75 Chloroplastida Streptophyte 61 1 nd nd nd 1 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd 51 Uncultured marine metazoan clone DQ001503.1 94 Sapphirina scarlata GU969208.1 90 Metazoa Copepod 62 0 nd nd nd 0 nd nd nd 1 nd nd nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd ========================= cell_type ------------------------- cyanobacteria ========================= cruise_id1 cruise_id2 year month day yrday_gmt lat lon ------------------------- AE0928 253 2009 12 09 343 31.6005 -64.1020 ========================= lane z10 z20 z25 z30 z40 z60 z70 z75 z80 z85 z90 z100 z110 z120 z130 z138 z140 z150 z180 fixed_trap_150m unfixed_trap_150m unfixed_trap_a_150m unfixed_trap_b_150m unfixed_trap_c_150m unfixed_trap_d_150m band_num id_closest_match accession_number_1 identity_pcent_1 id_closest_cultured_match accession_number_2 identity_pcent_2 taxon_1 taxon_2 ------------------------- 1 0 nd nd nd 0 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd nd nd nd nd nd nd std nd nd nd nd nd nd nd nd 2 1 nd nd nd 0 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd 3 1 nd nd nd 1 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd 4 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd nd nd nd nd nd nd 1 Uncultured marine bacterium clone A6-3-33 FJ826341.1 98 Dinophysis mitra AB199883.1 97 Alveolata Dinoflagellate 5 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 0 nd nd nd nd nd nd nd nd nd nd nd 2 Uncultured bacterium clone S25_1681 EF575337.1 88 Dinophysis mitra AB199883.1 88 Alveolata Dinoflagellate 6 1 nd nd nd 1 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd nd nd nd nd nd nd 3 Uncultured bacterium clone S-5m-78 GU061929.1 99 Prochlorococcus marinus str. MIT 9215 CP000825.1 98 Cyanobacteria Prochlorococcus 7 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 0 nd nd nd nd nd nd nd nd nd nd nd std,5 Uncultured bacterium clone SW32 HQ288764.1 99 Prochlorococcus marinus str. MIT 9215 CP000825.1 99 Cyanobacteria Prochlorococcus 8 0 nd nd nd 0 nd nd nd 0 nd nd nd nd 1 nd nd nd nd nd nd nd nd nd nd nd 6 Uncultured bacterium clone S-5m-78 GU061929.1 99 Prochlorococcus marinus str. MIT 9215 CP000825.1 99 Cyanobacteria Prochlorococcus 9 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd nd nd nd nd nd nd std,7 Uncultured Synechococcus sp. clone JL-SCS-M48 AY664055.1 98 Synechococcus sp. KORDI-28 FJ497720.1 98 Cyanobacteria Synechococcus