# version: 15 April 2013 # [url links added 6/25/2013] # # Eukaryotic and Cyanobacteria DGGE band matrices and sequenced Band Matches # PI: S. Neuer (Arizona State U); J. Amacher # Phytoflux, BATS Station # 2008 - 2010 # ========================= cell_type ------------------------- eukaryote ========================= cruise_id1 cruise_id2 year month day yrday_gmt lat lon ------------------------- AE1003 255 2010 02 23 54 31.6700 -64.1700 ========================= lane z10 z20 z25 z30 z40 z60 z70 z75 z80 z85 z90 z100 z110 z120 z130 z138 z140 z150 z180 fixed_trap_150m unfixed_trap_150m unfixed_trap_a_150m unfixed_trap_b_150m unfixed_trap_c_150m unfixed_trap_d_150m band_num id_closest_match accession_number_1 identity_pcent_1 id_closest_cultured_match accession_number_2 identity_pcent_2 taxon_1 taxon_2 ------------------------- 1 1 nd nd nd 0 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd 1 bad sequence nd nd nd nd nd nd nd 2 0 nd nd nd 0 nd nd nd 1 nd nd nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 3 0 nd nd nd 1 nd nd nd 1 nd nd nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 4 1 nd nd nd 0 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd 2 Uncultured marine alveolate clone PROSOPE99.CTD2.30m.TTGE.141203_8 DQ001417.1 79 Gloeodinium montanum strain CCAC0066 EF058238.1 78 Alveolata Dinoflagellate 5 0 nd nd nd 0 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd 1 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 6 0 nd nd nd 0 nd nd nd 1 nd nd nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 7 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd 14 Uncultured marine eukaryote clone NW414.24 DQ120009.1 74 Pseudocohnilembus hargisi AY833087.1 72 Alveolata Ciliate 8 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd 15 Uncultured eukaryote clone SCM15C3 AY665059.1 89 Homalogastra setosa isolate GT1 clone 15 EF158848.1 83 Alveolata Ciliate 9 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 10 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 11 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 0 nd nd nd nd nd 1 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 12 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd 16 bad sequence nd nd nd nd nd nd nd 13 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 1 0 nd nd nd nd 17 Uncultured ciliate clone MLBA1.54 FJ410555.1 89 Parastrombidinopsis minima DQ393786.1 89 Alveolata Ciliate 14 0 nd nd nd 0 nd nd nd 1 nd nd nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 15 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 16 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 1 0 nd nd nd nd 28 Uncultured Scuticociliatia FN598289.1 96 Homalogastra setosa isolate GT1 clone 15 EF158848.1 91 Alveolata Ciliate 17 0 nd nd nd 0 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 18 0 nd nd nd 0 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd 1 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 19 0 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 1 0 nd nd nd nd 4 bad sequence nd nd nd nd nd nd nd 20 0 nd nd nd 0 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd 0 1 nd nd nd nd nd nd nd nd nd nd nd nd nd 21 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 1 0 nd nd nd nd 5 Uncultured Micromonas clone ST050700.C6 HM997233.1 93 Micromonas sp. RCC299 HM191693.1 93 Chloroplastida Prasinophyte 22 0 nd nd nd 0 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd std nd nd nd nd nd nd nd nd 23 0 nd nd nd 1 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd 1 0 nd nd nd nd 29 bad sequence nd nd nd nd nd nd nd 24 1 nd nd nd 0 nd nd nd 0 nd nd nd nd 1 nd nd nd nd nd 1 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 25 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 0 1 nd nd nd nd 19 Aglaura hemistoma EU247820.1 78 nd nd nd Metazoa Cnidarian 26 0 nd nd nd 0 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd std nd nd nd nd nd nd nd nd 27 1 nd nd nd 1 nd nd nd 0 nd nd nd nd 1 nd nd nd nd nd 1 1 nd nd nd nd nd nd nd nd nd nd nd nd nd 28 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 29 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 1 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 30 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd 6,20 bad sequence nd nd nd nd nd nd nd 31 0 nd nd nd 0 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd 1 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 32 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 1 0 nd nd nd nd 24 bad sequence nd nd nd nd nd nd nd 33 0 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 1 0 nd nd nd nd 25 bad sequence nd nd nd nd nd nd nd 34 0 nd nd nd 0 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd std nd nd nd nd nd nd nd nd 35 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 1 0 nd nd nd nd 13 Uncultured Bathycoccus clone ST050700.H10 HM997277.1 73 Ostreococcus sp. RCC 393 AY425311.1 73 Chloroplastida Prasinophyte 36 1 nd nd nd 0 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd 1 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 37 0 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 1 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 38 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd 7 bad sequence nd nd nd nd nd nd nd 39 0 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 1 1 nd nd nd nd 27 nd nd nd Scambicornus sp. New Caledonia-RJH-2004 nd nd Metazoa Copepod 40 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd 8 Uncultured eukaryote clone RS1E4D01 HM227947.1 86 Gymnodinium sp. UTEX1653 EF492494.1 87 Alveolata Dinoflagellate 41 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 1 1 nd nd nd nd 30 Uncultured marine eukaryote clone EF_Dino_08 FJ210857.1 96 Warnowia sp. BSL-2009a FJ947040.1 94 Alveolata Dinoflagellate 42 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 0 1 nd nd nd nd 21 Calocalanus plumulosus GU969146.1 90 nd nd nd Metazoa Copepod 43 0 nd nd nd 1 nd nd nd 1 nd nd nd nd 0 nd nd nd nd nd 1 0 nd nd nd nd 31 Uncultured eukaryote clone E1aA53 EU333065.1 70 Azadinium spinosum strain 3D9 FJ217814.1 69 Alveolata Dinoflagellate 44 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd 9 Scambicornus sp. New Caledonia-RJH-2004 AY627011.1 89 nd nd nd Metazoa Copepod 45 0 nd nd nd 1 nd nd nd 0 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 46 1 nd nd nd 0 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 1 0 nd nd nd nd 10 Uncultured eukaryote clone AMT15_1B_36 EU780604.1 83 Lessardia elongata AF521100.1 78 Alveolata Dinoflagellate 47 1 nd nd nd 1 nd nd nd 0 nd nd nd nd 1 nd nd nd nd nd 1 0 nd nd nd nd 11 Clausocalanus furcatus GU969200.1 90 nd nd nd Metazoa Copepod 48 1 nd nd nd 0 nd nd nd 1 nd nd nd nd 0 nd nd nd nd nd 1 0 nd nd nd nd 12 Paracyclopina nana FJ214952.1 9400 nd nd nd Metazoa Copepod 49 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 50 0 nd nd nd 1 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 51 0 nd nd nd 0 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd 22 Uncultured eukaryote clone SCM27C52 AY665125.1 97 Oithona similis GU969179.1 94 Metazoa Copepod 52 0 nd nd nd 0 nd nd nd 1 nd nd nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 53 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 54 0 nd nd nd 1 nd nd nd 0 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 55 0 nd nd nd 0 nd nd nd 1 nd nd nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd ========================= cell_type ------------------------- cyanobacteria ========================= cruise_id1 cruise_id2 year month day yrday_gmt lat lon ------------------------- AE1003 255 2010 02 23 54 31.6700 -64.1700 ========================= lane z10 z20 z25 z30 z40 z60 z70 z75 z80 z85 z90 z100 z110 z120 z130 z138 z140 z150 z180 fixed_trap_150m unfixed_trap_150m unfixed_trap_a_150m unfixed_trap_b_150m unfixed_trap_c_150m unfixed_trap_d_150m band_num id_closest_match accession_number_1 identity_pcent_1 id_closest_cultured_match accession_number_2 identity_pcent_2 taxon_1 taxon_2 ------------------------- 1 0 nd nd nd 0 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd nd nd nd nd nd nd std nd nd nd nd nd nd nd nd 2 0 nd nd nd 0 nd nd nd 1 nd nd nd nd 0 nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd 3 0 nd nd nd 0 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd nd nd nd nd nd nd std nd nd nd nd nd nd nd nd 4 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd nd nd nd nd nd nd 17 Uncultured bacterium clone 0702007P19DMCFH10913 GU369580.1 83 Cymbella subturgidula clone D53 31 EU580519.1 82 Stramenopiles Diatom 5 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 0 nd nd nd nd nd nd nd nd nd nd nd 10 Uncultured bacterium clone S25_1681 EF575337.1 97 Dinophysis mitra AB199883.1 97 Alveolata Dinoflagellate 6 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd nd nd nd nd nd nd 11 Uncultured prymnesiophyte C19847 HM565909.1 91 Dinophysis mitra AB199883.1 90 Alveolata Dinoflagellate 7 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 0 nd nd nd nd nd nd nd nd nd nd nd 12 Uncultured prymnesiophyte C8704 HM565911.1 97 Dinophysis mitra AB199883.1 97 Alveolata Dinoflagellate 8 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 0 nd nd nd nd nd nd nd nd nd nd nd 21 Uncultured bacterium clone S25_1536 EF575192.1 99 Chrysochromulina sp. MBIC10518 AB196967.1 99 Haptophyta Prymnesiophyte 9 0 nd nd nd 0 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd nd nd nd nd nd nd std nd nd nd nd nd nd nd nd 10 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 0 nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd 11 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd nd nd nd nd nd nd 35 Uncultured phototrophic eukaryote clone SiDDec07OI60 GQ385802.1 98 Teleaulax amphioxeia AB471793.1 97 Cryptophyceae Cryptophyte 12 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd nd nd nd nd nd nd 37 Uncultured bacterium clone SINN733 HM128747.1 89 Teleaulax amphioxeia AB471793.1 89 Cryptophyceae Cryptophyte 13 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd nd nd nd nd nd nd 38 Uncultured bacterium clone SINN733 HM128747.1 91 Teleaulax amphioxeia AB471793.1 91 Cryptophyceae Cryptophyte 14 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd nd nd nd nd nd nd 36 Uncultured bacterium clone EDP-46 EU283222.1 96 Pyramimonas disomata FN563101.1 95 Chloroplastida Prasinophyte 15 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd nd nd nd nd nd nd std nd nd nd nd nd nd Cyanobacteria Prochlorococcus 16 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd nd nd nd nd nd nd std nd nd nd nd nd nd Cyanobacteria Synechococcus