# version: 15 April 2013 # [url links added 6/25/2013] # # Eukaryotic and Cyanobacteria DGGE band matrices and sequenced Band Matches # PI: S. Neuer (Arizona State U); J. Amacher # Phytoflux, BATS Station # 2008 - 2010 # ========================= cell_type ------------------------- eukaryote ========================= cruise_id1 cruise_id2 year month day yrday_gmt lat lon ------------------------- AE1005 255A 2010 03 08 67 31.6780 -64.1860 ========================= lane z10 z20 z25 z30 z40 z60 z70 z75 z80 z85 z90 z100 z110 z120 z130 z138 z140 z150 z180 fixed_trap_150m unfixed_trap_150m unfixed_trap_a_150m unfixed_trap_b_150m unfixed_trap_c_150m unfixed_trap_d_150m band_num id_closest_match accession_number_1 identity_pcent_1 id_closest_cultured_match accession_number_2 identity_pcent_2 taxon_1 taxon_2 ------------------------- 1 0 nd nd nd nd 0 nd nd nd nd nd 0 nd nd nd nd nd 1 nd nd 0 nd nd nd nd 33 Uncultured Polycystinea FN598237.1 95 Collozoum pelagicum AF091146.1 89 Radiolaria Polycystinea 2 0 nd nd nd nd 0 nd nd nd nd nd 0 nd nd nd nd nd 1 nd nd 0 nd nd nd nd 34 Uncultured Polycystinea FN598237.1 93 Collozoum pelagicum AF091146.1 89 Radiolaria Polycystinea 3 1 nd nd nd nd 1 nd nd nd nd nd 1 nd nd nd nd nd 1 nd nd 0 nd nd nd nd 35 bad sequence nd nd nd nd nd nd nd 4 1 nd nd nd nd 1 nd nd nd nd nd 1 nd nd nd nd nd 1 nd nd 0 nd nd nd nd 36 Uncultured eukaryote clone SCM15C3 AY665059.1 89 Cardiostomatella vermiforme AY881632.1 85 Alveolata Ciliate 5 1 nd nd nd nd 1 nd nd nd nd nd 1 nd nd nd nd nd 0 nd nd 0 nd nd nd nd 37 Uncultured eukaryote clone SCM15C3 AY665059.1 81 Ottowphyra dragescoi EU039904.2 80 Alveolata Ciliate 6 1 nd nd nd nd 1 nd nd nd nd nd 0 nd nd nd nd nd 1 nd nd 0 nd nd nd nd 38 bad sequence nd nd nd nd nd nd nd 7 1 nd nd nd nd 1 nd nd nd nd nd 1 nd nd nd nd nd 1 nd nd 0 nd nd nd nd 39 Uncultured marine eukaryote clone UEPAC05Cp2 AY129060.1 75 Oblongichytrium sp. HK9 FJ821481.1 79 Stramenopiles Labyrinthulida 8 0 nd nd nd nd 1 nd nd nd nd nd 1 nd nd nd nd nd 0 nd nd 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 9 1 nd nd nd nd 1 nd nd nd nd nd 0 nd nd nd nd nd 0 nd nd 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 10 0 nd nd nd nd 1 nd nd nd nd nd 0 nd nd nd nd nd 1 nd nd 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 11 0 nd nd nd nd 1 nd nd nd nd nd 0 nd nd nd nd nd 0 nd nd 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 12 1 nd nd nd nd 1 nd nd nd nd nd 1 nd nd nd nd nd 1 nd nd 0 nd nd nd nd 40 bad sequence nd nd nd nd nd nd nd 13 1 nd nd nd nd 0 nd nd nd nd nd 1 nd nd nd nd nd 1 nd nd 0 nd nd nd nd 41 Uncultured eukaryote clone SCM37C10 AY664999.1 77 Heterocapsa rotundata strain CCCM 680 AF274267.1 77 Alveolata Dinoflagellate 14 0 nd nd nd nd 0 nd nd nd nd nd 1 nd nd nd nd nd 0 nd nd 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 15 0 nd nd nd nd 0 nd nd nd nd nd 0 nd nd nd nd nd 1 nd nd 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 16 0 nd nd nd nd 0 nd nd nd nd nd 1 nd nd nd nd nd 0 nd nd 1 nd nd nd nd nd nd nd nd nd nd nd nd nd 17 1 nd nd nd nd 1 nd nd nd nd nd 1 nd nd nd nd nd 0 nd nd 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 18 0 nd nd nd nd 0 nd nd nd nd nd 0 nd nd nd nd nd 0 nd nd 0 nd nd nd nd std nd nd nd nd nd nd nd nd 19 0 nd nd nd nd 1 nd nd nd nd nd 1 nd nd nd nd nd 1 nd nd 0 nd nd nd nd 44 Uncultured marine metazoan clone PRTBE7497 HM800083.1 90 Sphaeronectes gracilis AF358070.1 90 Metazoa Cnidarian 20 1 nd nd nd nd 1 nd nd nd nd nd 0 nd nd nd nd nd 0 nd nd 0 nd nd nd nd 47 bad sequence nd nd nd nd nd nd nd 21 1 nd nd nd nd 1 nd nd nd nd nd 1 nd nd nd nd nd 1 nd nd 1 nd nd nd nd 48 Uncultured eukaryote clone GPS1B3 GU072201.1 93 Amoebophrya sp. ex Prorocentrum micans AY208893.1 90 Alveolata Dinoflagellate 22 0 nd nd nd nd 0 nd nd nd nd nd 0 nd nd nd nd nd 0 nd nd 0 nd nd nd nd std nd nd nd nd nd nd nd nd 23 0 nd nd nd nd 1 nd nd nd nd nd 0 nd nd nd nd nd 1 nd nd 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 24 0 nd nd nd nd 1 nd nd nd nd nd 0 nd nd nd nd nd 1 nd nd 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 25 0 nd nd nd nd 0 nd nd nd nd nd 0 nd nd nd nd nd 1 nd nd 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 26 1 nd nd nd nd 1 nd nd nd nd nd 1 nd nd nd nd nd 1 nd nd 0 nd nd nd nd 49 bad sequence nd nd nd nd nd nd nd 27 0 nd nd nd nd 1 nd nd nd nd nd 1 nd nd nd nd nd 1 nd nd 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 28 0 nd nd nd nd 0 nd nd nd nd nd 1 nd nd nd nd nd 1 nd nd 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 29 1 nd nd nd nd 1 nd nd nd nd nd 1 nd nd nd nd nd 1 nd nd 1 nd nd nd nd 53 Uncultured marine eukaryote AB513687.1 75 Heterocapsa rotundata strain CCCM 680 AF274267.1 75 Alveolata Dinoflagellate 30 0 nd nd nd nd 0 nd nd nd nd nd 0 nd nd nd nd nd 0 nd nd 0 nd nd nd nd std nd nd nd nd nd nd nd nd 31 0 nd nd nd nd 1 nd nd nd nd nd 1 nd nd nd nd nd 1 nd nd 0 nd nd nd nd 55 bad sequence nd nd nd nd nd nd nd 32 1 nd nd nd nd 1 nd nd nd nd nd 1 nd nd nd nd nd 0 nd nd 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 33 0 nd nd nd nd 1 nd nd nd nd nd 1 nd nd nd nd nd 1 nd nd 0 nd nd nd nd 56 bad sequence nd nd nd nd nd nd nd 34 1 nd nd nd nd 1 nd nd nd nd nd 1 nd nd nd nd nd 1 nd nd 1 nd nd nd nd 69 Uncultured marine metazoan clone PRTBE7504 HM800085.1 94 Scambicornus sp. New Caledonia-RJH-2004 AY627011.1 88 Metazoa Copepod 35 0 nd nd nd nd 0 nd nd nd nd nd 1 nd nd nd nd nd 1 nd nd 0 nd nd nd nd 58 Uncultured Polycystinea FN598251.1 95 Arachnosphaera myriacantha AB490705.1 93 Radiolaria Polycystinea 36 0 nd nd nd nd 0 nd nd nd nd nd 1 nd nd nd nd nd 0 nd nd 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 37 1 nd nd nd nd 1 nd nd nd nd nd 1 nd nd nd nd nd 1 nd nd 0 nd nd nd nd 60 Calocalanus plumulosus GU969146.1 96 nd nd nd Metazoa Copepod 38 0 nd nd nd nd 0 nd nd nd nd nd 1 nd nd nd nd nd 0 nd nd 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 39 1 nd nd nd nd 1 nd nd nd nd nd 1 nd nd nd nd nd 1 nd nd 0 nd nd nd nd 61 Calocalanus plumulosus GU969146.1 92 nd nd nd Metazoa Copepod 40 1 nd nd nd nd 1 nd nd nd nd nd 0 nd nd nd nd nd 0 nd nd 0 nd nd nd nd 63 Calocalanus plumulosus GU969146.1 93 nd nd nd Metazoa Copepod 41 1 nd nd nd nd 0 nd nd nd nd nd 1 nd nd nd nd nd 0 nd nd 0 nd nd nd nd 66 Uncultured eukaryote clone PS1EM1G07 HM227437.1 93 Clausocalanus furcatus GU969200.1 93 Metazoa Copepod 42 1 nd nd nd nd 1 nd nd nd nd nd 1 nd nd nd nd nd 0 nd nd 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 43 0 nd nd nd nd 0 nd nd nd nd nd 1 nd nd nd nd nd 1 nd nd 1 nd nd nd nd 67 Uncultured eukaryote clone SCM28C3 AY665130.1 94 Scambicornus sp. New Caledonia-RJH-2004 AY627011.1 88 Metazoa Copepod 44 0 nd nd nd nd 1 nd nd nd nd nd 0 nd nd nd nd nd 1 nd nd 1 nd nd nd nd nd nd nd nd nd nd nd nd nd 45 0 nd nd nd nd 0 nd nd nd nd nd 1 nd nd nd nd nd 1 nd nd 1 nd nd nd nd nd nd nd nd nd nd nd nd nd 46 1 nd nd nd nd 1 nd nd nd nd nd 0 nd nd nd nd nd 1 nd nd 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 47 0 nd nd nd nd 1 nd nd nd nd nd 0 nd nd nd nd nd 0 nd nd 0 nd nd nd nd nd nd nd nd nd nd nd nd nd ========================= cell_type ------------------------- cyanobacteria ========================= cruise_id1 cruise_id2 year month day yrday_gmt lat lon ------------------------- AE1005 255A 2010 03 08 67 31.6780 -64.1860 ========================= lane z10 z20 z25 z30 z40 z60 z70 z75 z80 z85 z90 z100 z110 z120 z130 z138 z140 z150 z180 fixed_trap_150m unfixed_trap_150m unfixed_trap_a_150m unfixed_trap_b_150m unfixed_trap_c_150m unfixed_trap_d_150m band_num id_closest_match accession_number_1 identity_pcent_1 id_closest_cultured_match accession_number_2 identity_pcent_2 taxon_1 taxon_2 ------------------------- 1 0 nd nd nd nd 0 nd nd nd nd nd 0 nd nd nd nd nd 0 nd nd nd nd nd nd nd std nd nd nd nd nd nd nd nd 2 0 nd nd nd nd 0 nd nd nd nd nd 0 nd nd nd nd nd 0 nd nd nd nd nd nd nd std nd nd nd nd nd nd nd nd 3 1 nd nd nd nd 1 nd nd nd nd nd 1 nd nd nd nd nd 1 nd nd nd nd nd nd nd 15 Uncultured bacterium clone Cb303s.23 EF014713.1 99 Chrysochromulina sp. clone 124 DQ187908.1 99 Haptophyta Prymnesiophyte 4 1 nd nd nd nd 1 nd nd nd nd nd 0 nd nd nd nd nd 1 nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd 5 0 nd nd nd nd 0 nd nd nd nd nd 0 nd nd nd nd nd 0 nd nd nd nd nd nd nd std nd nd nd nd nd nd nd nd 6 1 nd nd nd nd 1 nd nd nd nd nd 0 nd nd nd nd nd 1 nd nd nd nd nd nd nd std,12 Uncultured cyanobacterium clone Souza16sRcya4a DQ363170.1 98 Prochlorococcus marinus str. MIT 9215 CP000825.1 98 Cyanobacteria Prochlorococcus 7 1 nd nd nd nd 1 nd nd nd nd nd 0 nd nd nd nd nd 1 nd nd nd nd nd nd nd std,13 Uncultured Synechococcus sp. clone JL-SCS-M48 AY664055.1 98 Synechococcus sp. KORDI-28 FJ497720.1 98 Cyanobacteria Synechococcus