# version: 15 April 2013 # [url links added 6/25/2013] # # Eukaryotic and Cyanobacteria DGGE band matrices and sequenced Band Matches # PI: S. Neuer (Arizona State U); J. Amacher # Phytoflux, BATS Station # 2008 - 2010 # ========================= cell_type ------------------------- eukaryote ========================= cruise_id1 cruise_id2 year month day yrday_gmt lat lon ------------------------- AE1006 256 2010 03 25 84 31.6160 -64.1460 ========================= lane z10 z20 z25 z30 z40 z60 z70 z75 z80 z85 z90 z100 z110 z120 z130 z138 z140 z150 z180 fixed_trap_150m unfixed_trap_150m unfixed_trap_a_150m unfixed_trap_b_150m unfixed_trap_c_150m unfixed_trap_d_150m band_num id_closest_match accession_number_1 identity_pcent_1 id_closest_cultured_match accession_number_2 identity_pcent_2 taxon_1 taxon_2 ------------------------- 1 1 nd nd nd 0 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 2 0 nd nd nd 0 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd 1 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 3 0 nd nd nd 0 nd nd nd 0 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 4 0 nd nd nd 0 nd nd nd 0 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 5 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd 2 Uncultured eukaryote clone SCM16C45 AY665090.1 91 Bryometopus pseudochilodon EU039887.1 79 Alveolata Ciliate 6 1 nd nd nd 1 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 7 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd 5 Uncultured eukaryote clone SCM15C3 AY665059.1 85 Cardiostomatella vermiforme AY881632.1 81 Alveolata Ciliate 8 0 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd 6 Uncultured eukaryote clone SCM15C28 AY665069.1 94 Bursaria sp. MSD-2007-2B EU039891.1 77 Alveolata Ciliate 9 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd 9 Uncultured eukaryote clone BLENRD2T4 11 EU785297.1 73 Candida pseudolambica AB053238.2 78 Fungi Ascomycota 10 1 nd nd nd 1 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd 11 Uncultured marine eukaryote clone UEPACAIp5 AY129053.1 99 Novistrombidium orientale FJ422988.1 91 Alveolata Ciliate 11 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 1 0 nd nd nd nd 12 Uncultured eukaryote clone RF1E4D05 HM227746.1 79 Strombidium sp. GBM-2010a clone viii GU206562.1 77 Alveolata Ciliate 12 0 nd nd nd 0 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 13 1 nd nd nd 0 nd nd nd 1 nd nd nd nd 0 nd nd nd nd nd 1 0 nd nd nd nd 13 bad sequence nd nd nd nd nd nd nd 14 0 nd nd nd 1 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd 16 bad sequence nd nd nd nd nd nd nd 15 1 nd nd nd 0 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd 14 bad sequence nd nd nd nd nd nd nd 16 1 nd nd nd 1 nd nd nd 0 nd nd nd nd 1 nd nd nd nd nd 1 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 17 0 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 1 0 nd nd nd nd 18 Uncultured marine eukaryote AJ829785.1 73 Homalogastra setosa EF158848.1 72 Alveolata Ciliate 18 0 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 1 0 nd nd nd nd 20 bad sequence nd nd nd nd nd nd nd 19 0 nd nd nd 1 nd nd nd 1 nd nd nd nd 0 nd nd nd nd nd 1 0 nd nd nd nd 22 Hippopodius hippopus AF358069.1 76 nd nd nd Metazoa Cnidarian 20 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 0 1 nd nd nd nd 23 Uncultured eukaryote isolate DGGE gel band A019FB09 EU182754.1 95 Strombidium stylifer DQ631805.1 95 Alveolata Ciliate 21 0 nd nd nd 0 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd standard nd nd nd nd nd nd nd nd 22 0 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 1 1 nd nd nd nd 28 Sulculeolaria quadrivalvis AY937353.1 99 nd nd nd Metazoa Cnidarian 23 1 nd nd nd 1 nd nd nd 0 nd nd nd nd 1 nd nd nd nd nd 0 1 nd nd nd nd 25 Uncultured marine eukaryote clone BTPL20040713.0128 FJ222023.1 69 Eutintinnus sp. EFL00 EU399533.1 70 Alveolata Ciliate 24 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd 30 Uncultured eukaryote isolate DGGE gel band A019FB09 EU182754.1 73 Parallelostrombidium sp. 3-GD-08040807 FJ422991.1 77 Alveolata Ciliate 25 0 nd nd nd 0 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd std nd nd nd nd nd nd nd nd 26 1 nd nd nd 1 nd nd nd 0 nd nd nd nd 1 nd nd nd nd nd 0 1 nd nd nd nd 31 Uncultured eukaryote clone N4aA2 EU333088.1 68 Oxytrichidae EF023118.1 66 Alveolata Ciliate 27 0 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd 33 Uncultured syndiniales clone PROSOPE.EM-110m.133 EU793772.1 75 Amoebophrya sp. ex Prorocentrum micans AY208893.1 75 Alveolata Dinoflagellate 28 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd 34 Chrysochromulina sp. LKM-2007-1 AM491020.1 79 nd nd nd Haptophyta Prymnesiophyte 29 0 nd nd nd 0 nd nd nd 1 nd nd nd nd 0 nd nd nd nd nd 1 0 nd nd nd nd 37 Uncultured Chlorophyta FN690723.1 71 Nanochlorum sp. MBIC10091 AB058309.1 68 Chloroplastida Chlorophyta 30 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd 39 Peridinium inconspicuum strain CCAP1140 EF058247.1 89 nd nd nd Alveolata Dinoflagellate 31 0 nd nd nd 0 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 1 0 nd nd nd nd 73 Uncultured marine eukaryote AJ829791.1 95 Didymocyrtis tetrathalamus AB193605.1 95 Radiolaria Polycystinea 32 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd 40 Uncultured syndiniales clone PROSOPE.ED-50m.234 EU793712.1 78 Lessardia elongata AF521100.1 77 Alveolata Dinoflagellate 33 0 nd nd nd 0 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd 1 0 nd nd nd nd 74 bad sequence nd nd nd nd nd nd nd 34 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd 42,43 bad sequence nd nd nd nd nd nd nd 35 0 nd nd nd 0 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd std nd nd nd nd nd nd nd nd 36 0 nd nd nd 0 nd nd nd 1 nd nd nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 37 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd 44,45 bad sequence nd nd nd nd nd nd nd 38 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 0 1 nd nd nd nd 75 Uncultured Polycystinea FN598307.1 98 Arachnosphaera myriacantha AB490705.1 96 Radiolaria Polycystinea 39 0 nd nd nd 0 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd 1 1 nd nd nd nd 76 Uncultured Polycystinea FN598307.1 98 Arachnosphaera myriacantha AB490705.1 98 Radiolaria Polycystinea 40 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 0 nd nd nd nd nd 0 1 nd nd nd nd 48,49 nd nd nd nd nd nd nd nd 41 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd 50,51 nd nd nd nd nd nd nd nd 42 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 1 1 nd nd nd nd 52,53 nd nd nd nd nd nd nd nd 43 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 0 1 nd nd nd nd 54,55 nd nd nd nd nd nd nd nd 44 0 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd 57 Uncultured marine metazoan clone PROSOPE99.CTD17.55m.DGGE.19050 DQ001508.1 96 Calocalanus plumulosus GU969146.1 94 Metazoa Copepod 45 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd 59 Uncultured eukaryote clone PS1E1C10 HM227220.1 99 Clausocalanus furcatus GU969200.1 99 Metazoa Copepod 46 1 nd nd nd 0 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd 0 1 nd nd nd nd 60 Uncultured eukaryote clone NH GU474373.1 97 Paracalanus parvus GU969181.1 96 Metazoa Copepod 47 0 nd nd nd 0 nd nd nd 1 nd nd nd nd 0 nd nd nd nd nd 0 1 nd nd nd nd 61 Copepod environmental sample clone 17_BSA6S5Euk GQ402479.1 95 Paracyclopina nana FJ214952.1 95 Metazoa Copepod 48 1 nd nd nd 1 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd 62,63 bad sequence nd nd nd nd nd nd nd 49 0 nd nd nd 1 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 50 1 nd nd nd 1 nd nd nd 0 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd 64,65 bad sequence nd nd nd nd nd nd nd 51 0 nd nd nd 0 nd nd nd 0 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd nd nd nd nd nd nd nd nd nd 52 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd 0 0 nd nd nd nd 66 Paracyclopina nana FJ214952.1 96 nd nd nd Metazoa Copepod 53 0 nd nd nd 0 nd nd nd 1 nd nd nd nd 0 nd nd nd nd nd 0 0 nd nd nd nd 69 Copepod environmental sample clone 17_BSA6S5Euk GQ402479.1 98 Oithona sp. AC-2010 GU594643.1 98 Metazoa Copepod ========================= cell_type ------------------------- cyanobacteria ========================= cruise_id1 cruise_id2 year month day yrday_gmt lat lon ------------------------- AE1006 256 2010 03 25 84 31.6160 -64.1460 ========================= lane z10 z20 z25 z30 z40 z60 z70 z75 z80 z85 z90 z100 z110 z120 z130 z138 z140 z150 z180 fixed_trap_150m unfixed_trap_150m unfixed_trap_a_150m unfixed_trap_b_150m unfixed_trap_c_150m unfixed_trap_d_150m band_num id_closest_match accession_number_1 identity_pcent_1 id_closest_cultured_match accession_number_2 identity_pcent_2 taxon_1 taxon_2 ------------------------- 1 0 nd nd nd 0 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd nd nd nd nd nd nd std nd nd nd nd nd nd nd nd 2 0 nd nd nd 0 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd nd nd nd nd nd nd std nd nd nd nd nd nd nd nd 3 1 nd nd nd 0 nd nd nd 0 nd nd nd nd 1 nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd 4 0 nd nd nd 0 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd 5 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd nd nd nd nd nd nd 14 Uncultured bacterium clone S25_1205 EF574861.1 99 Chrysochromulina sp. MBIC10518 AB196967.1 98 Haptophyta Prymnesiophyte 6 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd nd nd nd nd nd nd 15 Uncultured bacterium clone Cb303s.23 EF014713.1 99 Chrysochromulina sp. clone 124 DQ187908.1 99 Haptophyta Prymnesiophyte 7 1 nd nd nd 1 nd nd nd 0 nd nd nd nd 1 nd nd nd nd nd nd nd nd nd nd nd 16 Uncultured bacterium clone S25_1536 EF575192.1 96 Dinophysis mitra AB199883.1 96 Alveolata Dinoflagellate 8 0 nd nd nd 0 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd nd nd nd nd nd nd std nd nd nd nd nd nd nd nd 9 1 nd nd nd 1 nd nd nd 0 nd nd nd nd 1 nd nd nd nd nd nd nd nd nd nd nd 17 Uncultured bacterium clone S25_1536 EF575192.1 96 Chrysochromulina sp. MBIC10518 AB196967.1 95 Haptophyta Prymnesiophyte 10 1 nd nd nd 0 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd nd nd nd nd nd nd 18 Uncultured prymnesiophyte C19847 HM565909.1 95 Chrysochromulina sp. MBIC10518 AB196967.1 95 Haptophyta Prymnesiophyte 11 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd 12 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd nd nd nd nd nd nd 8 bad sequence nd nd nd nd nd nd nd 13 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd nd nd nd nd nd nd 9 Uncultured bacterium clone A23-21 HQ166830.1 98 Teleaulax amphioxeia AB471793.1 98 Cryptophyceae Cryptophyte 14 0 nd nd nd 0 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd nd nd nd nd nd nd 21 Uncultured bacterium clone SINN733 HM128747.1 95 Teleaulax amphioxeia AB471793.1 95 Cryptophyceae Cryptophyte 15 1 nd nd nd 0 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd nd nd nd nd nd nd 10 Uncultured bacterium clone A23-21 HQ166830.1 98 Teleaulax amphioxeia AB471793.1 98 Cryptophyceae Cryptophyte 16 1 nd nd nd 0 nd nd nd 0 nd nd nd nd 0 nd nd nd nd nd nd nd nd nd nd nd 11 Uncultured marine bacterium clone MOLA_JAN08-5m-126 GU204451.1 99 Teleaulax amphioxeia AB471793.1 98 Cryptophyceae Cryptophyte 17 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd nd nd nd nd nd nd std,12 Uncultured cyanobacterium clone Souza16sRcya4a DQ363170.1 98 Prochlorococcus marinus str. MIT 9215 CP000825.1 98 Cyanobacteria Prochlorococcus 18 1 nd nd nd 1 nd nd nd 1 nd nd nd nd 1 nd nd nd nd nd nd nd nd nd nd nd std,13 Uncultured Synechococcus sp. clone JL-SCS-M48 AY664055.1 98 Synechococcus sp. KORDI-28 FJ497720.1 98 Cyanobacteria Synechococcus