Dataset: Nauplius escape swim
Deployment: Naup_2015

Copepod nauplius appendage measurements during escape response

Principal Investigator:

Petra H. Lenz (University of Hawaii at Manoa, PBRC)

Co-Principal Investigator:

Daniel K. Hartline (University of Hawaii at Manoa, PBRC)

BCO-DMO Data Manager:

Nancy Copley (Woods Hole Oceanographic Institution, WHOI BCO-DMO)

Project:

The Drive to Survive: Copepods vs Ichthyoplankton (PreyEscape)

Current State:

Final no updates expected

Version Date:

2015-12-01

Data URL:

https://www.bco-dmo.org/dataset-deployment/627989/data

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Description

High-resolution measurement of body displacement and angular position of individual appendages during escape swims of nauplii of the calanoid copepod, Bestiolina similis.

Related Reference:

Lenz, P.H., Takagi, D. and Hartline, D.K. 2015. Choreographed swimming of copepod nauplii. J. Royal Society Interface 12: 20150776.

Methods & Sampling

Dataset acquisition description

Spontaneous escape swims were recorded at 5000 fps with an Olympus Industrial i-SPEED high-speed camera at 10x magnification through an inverted microscope (Olympus IX70). See publication for additional details.

Data Processing Description

Dataset Processing Description

Each video image in a swim sequence was converted into a bitmap (tiff format) and analyzed using ImageJ (Wayne Rasband rsbweb.nih.gov/ij/). Distance traveled from the initial rest point was calculate using Pythagorean theorem using X0, Xt and Y0, Yt coordinates. See publication for additional details.

More information about this dataset deployment

Funding

Award Number	Funding Source
OCE-1235549	NSF Division of Ocean Sciences

Instruments

Camera

Supplied Name:

Supplied Description:

Olympus Industrial i-SPEED high-speed camera

Instrument Type

Generic Name: Camera

Acronym: camera

Community Identifier: http://vocab.nerc.ac.uk/collection/L05/current/311/

Generic Description:

All types of photographic equipment including stills, video, film and digital systems.

Microscope - Optical

Supplied Name:

Supplied Description:

Inverted microscope (Olympus IX70)

Instrument Type

Generic Name: Microscope - Optical

Community Identifier: http://vocab.nerc.ac.uk/collection/L05/current/LAB05/

Generic Description:

Instruments that generate enlarged images of samples using the phenomena of reflection and absorption of visible light. Includes conventional and inverted instruments. Also called a "light microscope".

Parameters

Supplied Name	Supplied description	Supplied Units	Standard Name
meas_num	Measurement number made in the data series. Not all start from 0 since the start time was normalized across data files.	unitless	sample
x_axis	X-axis measurement in mm in relation to the top left corner of the image where x=0 and y=0.	millimeters	xpos
y_axis	Y-axis measurement in mm in relation to the top left corner of the image where x=0 and y=0.	millimeters	ypos
image_frame	refers to the image number after converted from the video that capture the swim episode at 5000 fps.	unitless	no_bcodmo_term
time_elapsed	Time in ms set to 0 at the beginning of the measured sequence and is given as increments of 0.2 ms computed from video recording speed (5000 fps) .	milliseconds	time_elapsed
A1_angle	Angular measurement of first antenna with respect to main body axis in degrees.	degrees	angle
A2_angle	Angular measurement of second antenna with respect to main body axis in degrees.	degrees	angle
mand_angle	Angular measurement of mandible with respect to main body axis in degrees.	degrees	angle
distance	Computed displacement of nauplius in mm using Pythagorean theorem	millimeters	no_bcodmo_term

Database

Contribute Data

Dataset: Nauplius escape swim
Deployment: Naup_2015

Dataset acquisition description

Dataset Processing Description

Database

Contribute Data

Dataset: Nauplius escape swimDeployment: Naup_2015

Dataset acquisition description

Dataset Processing Description

Dataset: Nauplius escape swim
Deployment: Naup_2015