# Supplementary Data 3a. Core microbiomes across all samples as measured by taxa prevalence # D. Burkepile (UC-SB) # version: 2017-01-10 # NOTE: Published in Nature Communications 7:11833 doi:10.1038/ncomms11833, Supplementary Data 3a # ========================= taxonomy all_tmt_95pcent all_tmt_75pcent all_tmt_50pcent core_only_95pcent core_only_75pcent core_only_50pcent ------------------------- k__Bacteria;p__Actinobacteria;c__Acidimicrobiia;o__Acidimicrobiales X X X X X X k__Bacteria;p__Bacteroidetes;c__Cytophagia;o__Cytophagales X X X X X X k__Bacteria;p__Bacteroidetes;c__Flavobacteriia;o__Flavobacteriales X X X X X X k__Bacteria;p__Cyanobacteria;c__Synechococcophycideae;o__Synechococcales X X X X X X k__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__ X X X X X X k__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales X X X X X X k__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales X X X X X X k__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rickettsiales X X X X X X k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Alteromonadales X X X X X X k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Oceanospirillales X X X X X X Unassigned;Other;Other;Other X X X X X X k__Bacteria;p__Planctomycetes;c__Planctomycetia;o__Pirellulales X X X - X X k__Bacteria;p__Proteobacteria;c__Deltaproteobacteria;o__Myxococcales X X X - X X k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Vibrionales - X X X X X k__Bacteria;p__Bacteroidetes;c__[Saprospirae];o__[Saprospirales] - X X - X X k__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales - X X - X X k__Bacteria;p__Cyanobacteria;c__Oscillatoriophycideae;o__Chroococcales - X X - X X k__Bacteria;p__Planctomycetes;c__Phycisphaerae;o__Phycisphaerales - X X - X X k__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Kiloniellales - X X - X X k__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales - X X - X X k__Bacteria;p__Proteobacteria;c__Deltaproteobacteria;o__Bdellovibrionales - X X - X X k__Bacteria;p__Proteobacteria;c__Deltaproteobacteria;o__NB1-j - X X - X X k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiotrichales - X X - X X k__Bacteria;p__SAR406;c__AB16;o__Arctic96B-7 - X X - X X k__Bacteria;p__Verrucomicrobia;c__Verrucomicrobiae;o__Verrucomicrobiales - X X - X X k__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales - X X - - X k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales - X X - - X k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__HTCC2188 - X X - - X k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales - X X - - X k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;Other - X X - - X k__Bacteria;p__Verrucomicrobia;c__Opitutae;o__Puniceicoccales - X X - - X k__Archaea;p__Euryarchaeota;c__Thermoplasmata;o__E2 - - X - - X k__Bacteria;p__Acidobacteria;c__Sva0725;o__Sva0725 - - X - - X k__Bacteria;p__Actinobacteria;c__Actinobacteria;o__Actinomycetales - - X - - X k__Bacteria;p__Bacteroidetes;c__[Rhodothermi];o__[Rhodothermales] - - X - - X k__Bacteria;p__Bacteroidetes;c__BME43;o__ - - X - - X k__Bacteria;p__Cyanobacteria;c__Gloeobacterophycideae;o__Gloeobacterales - - X - - X k__Bacteria;p__Cyanobacteria;c__Synechococcophycideae;o__Pseudanabaenales - - X - - X k__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales - - X - - X k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales - - X - - X k__Bacteria;p__Fusobacteria;c__Fusobacteriia;o__Fusobacteriales - - X - - X k__Bacteria;p__Lentisphaerae;c__[Lentisphaeria];o__Lentisphaerales - - X - - X k__Bacteria;p__Planctomycetes;c__;o__ - - X - - X k__Bacteria;p__Planctomycetes;c__OM190;o__agg27 - - X - - X k__Bacteria;p__Planctomycetes;c__OM190;o__CL500-15 - - X - - X k__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__BD7-3 - - X - - X k__Bacteria;p__Proteobacteria;c__Betaproteobacteria;o__Burkholderiales - - X - - X k__Bacteria;p__Proteobacteria;c__Deltaproteobacteria;o__Desulfobacterales - - X - - X k__Bacteria;p__Proteobacteria;c__Deltaproteobacteria;o__GMD14H09 - - X - - X k__Bacteria;p__Proteobacteria;c__Deltaproteobacteria;o__PB19 - - X - - X k__Bacteria;p__Proteobacteria;c__Deltaproteobacteria;o__Spirobacillales - - X - - X k__Bacteria;p__Proteobacteria;c__Deltaproteobacteria;o__Sva0853 - - X - - X k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__ - - X - - X k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__[Marinicellales] - - X - - X k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__HOC36 - - X - - X k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales - - X - - X k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiohalorhabdales - - X - - X k__Bacteria;p__Verrucomicrobia;c__Verruco-5;o__R76-B128 - - X - - X