# OC1703A sediment metagenomes and metatranscriptomes # PI: Anne Dekas # Version date (v1): 2021-10-11 ========================= BioProject BioSample SRA_run_ID SRA_run_link SRA_study_ID SRA_title library_strategy library_source library_selection library_layout platform instrument_model design_description elevation depth latitude longitude collection_date ------------------------- PRJNA654836 OC_100m_C4_0cm5cm_MG SRR12660002 https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR12660002 SRP282873 Marine sediment microbial communities off the coast of San Francisco CA United States - OC_100m_C4_0cm5cm metagenome WGS METAGENOMIC RANDOM paired ILLUMINA Illumina NovaSeq 6000 Total DNA and RNA extracted from the same environmental sample. -100 0-5 37.13 -121.46 2017-03-14 PRJNA677648 OC_100m_C4_0cm5cm_MT SRR13132360 https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR13132360 SRP294101 Metatranscriptome of marine sediment microbial communities off the coast of San Francisco CA United States - OC_100m_C4_0cm5cm RNA-Seq METATRANSCRIPTOMIC other paired ILLUMINA Illumina NovaSeq 6000 Total DNA and RNA extracted from the same environmental sample. RNA was reverse transcribed to cDNA. Illumina Low Input RNASeq w/rRNA Depletion -100 0-5 37.13 -121.46 2017-03-14 PRJNA654764 OC_100m_C4_20cm25cm_MG SRR12660725 https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR12660725 SRP282903 Marine sediment microbial communities off the coast of San Francisco CA United States - OC_100m_C4_20cm25cm metagenome WGS METAGENOMIC RANDOM paired ILLUMINA Illumina NovaSeq 6000 Total DNA and RNA extracted from the same environmental sample. -100 20-25 37.13 -121.46 2017-03-14 PRJNA654739 OC_2000m_C6_0cm5cm_MT SRR12660293 https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR12660293 SRP282884 Metatranscriptome of marine sediment microbial communities off the coast of San Francisco CA United States - OC_2000m_C6_0cm5cm RNA-Seq METATRANSCRIPTOMIC other paired ILLUMINA Illumina NovaSeq 6000 Total DNA and RNA extracted from the same environmental sample. RNA was reverse transcribed to cDNA. Illumina Low Input RNASeq w/rRNA Depletion -1973 0-5 36.91 -121.16 2017-03-21 PRJNA654737 OC_2000m_C6_10cm15cm_MG SRR12660647 https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR12660647 SRP282895 Marine sediment microbial communities off the coast of San Francisco CA United States - OC_2000m_C6_10cm15cm metagenome WGS METAGENOMIC RANDOM paired ILLUMINA Illumina NovaSeq 6000 Total DNA and RNA extracted from the same environmental sample. -1973 10-15 36.91 -121.16 2017-03-21 PRJNA653155 OC_3000m_C1_0cm_MG SRR13165303 https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR13165303 SRP295024 Marine sediment microbial communities off the coast of San Francisco CA United States - OC_3000m_C1_0cm metagenome WGS METAGENOMIC RANDOM paired ILLUMINA Illumina NovaSeq 6000 Total DNA and RNA extracted from the same environmental sample. -2965 0-2.5 36.80 -121.03 2017-03-19 PRJNA653155 OC_3000m_C1_0cm_MG SRR13165304 https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR13165304 SRP295024 Marine sediment microbial communities off the coast of San Francisco CA United States - OC_3000m_C1_0cm metagenome WGS METAGENOMIC RANDOM paired ILLUMINA Illumina NovaSeq 6000 Total DNA and RNA extracted from the same environmental sample. -2965 0-2.5 36.80 -121.03 2017-03-19 PRJNA677198 OC_3000m_C1_0cm_MT SRR13164999 https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR13164999 SRP295019 Metatranscriptome of marine sediment microbial communities off the coast of San Francisco CA United States - OC_3000m_C1_0cm RNA-Seq METATRANSCRIPTOMIC other paired ILLUMINA Illumina NovaSeq 6000 Total DNA and RNA extracted from the same environmental sample. RNA was reverse transcribed to cDNA. Illumina Low Input RNASeq w/rRNA Depletion -2965 0-2.5 36.80 -121.03 2017-03-19 PRJNA677197 OC_3000m_C1_20cm_MG SRR13165000 https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR13165000 SRP295020 Marine sediment microbial communities off the coast of San Francisco CA United States - OC_3000m_C1_20cm metagenome WGS METAGENOMIC RANDOM paired ILLUMINA Illumina NovaSeq 6000 Total DNA and RNA extracted from the same environmental sample. -2965 20-25 36.80 -121.03 2017-03-19 PRJNA654800 OC_3000m_C5_0cm2cm_MG SRR12660649 https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR12660649 SRP282896 Marine sediment microbial communities off the coast of San Francisco CA United States - OC_3000m_C5_0cm2cm metagenome WGS METAGENOMIC RANDOM paired ILLUMINA Illumina NovaSeq 6000 Total DNA and RNA extracted from the same environmental sample. -2965 0-2.5 36.80 -121.03 2017-03-19 PRJNA620477 OC_3000m_C5_15cm20cm_MG SRR11832401 https://gold.jgi.doe.gov/srarun?id=SRR11832401 SRP262994 Marine sediment microbial communities off the coast of San Francisco CA United States - OC_3000m_C5_15cm20cm metagenome WGS METAGENOMIC RANDOM paired ILLUMINA Illumina NovaSeq 6000 Total DNA and RNA extracted from the same environmental sample. -2965 15-20 36.80 -121.03 2017-03-19 PRJNA654801 OC_3500m_C2_0cm2cm_MG SRR12660292 https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR12660292 SRP282883 Marine sediment microbial communities off the coast of San Francisco CA United States - OC_3500m_C2_0cm2cm metagenome WGS METAGENOMIC RANDOM paired ILLUMINA Illumina NovaSeq 6000 Total DNA and RNA extracted from the same environmental sample. -3535 0-2.5 36.61 -122.62 2017-03-17 PRJNA654740 OC_3500m_C2_0cm2cm_MT SRR12660348 https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR12660348 SRP282887 Metatranscriptome of marine sediment microbial communities off the coast of San Francisco CA United States - OC_3500m_C2_0cm2cm RNA-Seq METATRANSCRIPTOMIC other paired ILLUMINA Illumina NovaSeq 6000 Total DNA and RNA extracted from the same environmental sample. RNA was reverse transcribed to cDNA. Illumina Low Input RNASeq w/rRNA Depletion -3535 0-2.5 36.61 -122.62 2017-03-17 PRJNA620478 OC_3500m_C2_20cm25cm_MG SRR11832402 https://gold.jgi.doe.gov/srarun?id=SRR11832402 SRP262995 Marine sediment microbial communities off the coast of San Francisco CA United States - OC_3500m_C2_20cm25cm metagenome WGS METAGENOMIC RANDOM paired ILLUMINA Illumina NovaSeq 6000 Total DNA and RNA extracted from the same environmental sample. -3535 20-25 36.61 -122.62 2017-03-17 PRJNA654802 OC_4000m_C2_0cm5cm_MG SRR12660648 https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR12660648 SRP282894 Marine sediment microbial communities off the coast of San Francisco CA United States - OC_100m_C4_0cm5cm metagenome WGS METAGENOMIC RANDOM paired ILLUMINA Illumina NovaSeq 6000 Total DNA and RNA extracted from the same environmental sample. -3875 0-5 36.19 -122.04 2017-03-16 PRJNA654741 OC_4000m_C2_0cm5cm_MT SRR12660294 https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR12660294 SRP282885 Metatranscriptome of marine sediment microbial communities off the coast of San Francisco CA United States - OC_4000m_C2_0cm5cm RNA-Seq METATRANSCRIPTOMIC other paired ILLUMINA Illumina NovaSeq 6000 Total DNA and RNA extracted from the same environmental sample. RNA was reverse transcribed to cDNA. Illumina Low Input RNASeq w/rRNA Depletion -3875 0-5 36.19 -122.04 2017-03-16 PRJNA620479 OC_4000m_C2_20cm25cm_MG SRR11832550 https://gold.jgi.doe.gov/srarun?id=SRR11832550 SRP262997 Marine sediment microbial communities off the coast of San Francisco CA United States - OC_4000m_C2_20cm25cm metagenome WGS METAGENOMIC RANDOM paired ILLUMINA Illumina NovaSeq 6000 Total DNA and RNA extracted from the same environmental sample. -3875 20-25 36.19 -122.04 2017-03-16 PRJNA654763 OC_4500m_C5_0cm5cm_MG SRR12660291 https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR12660291 SRP282882 Marine sediment microbial communities off the coast of San Francisco CA United States - OC_4500m_C5_0cm5cm metagenome WGS METAGENOMIC RANDOM paired ILLUMINA Illumina NovaSeq 6000 Total DNA and RNA extracted from the same environmental sample. -4475 0-5 35.69 -123.08 2017-03-15 PRJNA654742 OC_4500m_C5_0cm5cm_MT SRR12660970 https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR12660970 SRP282911 Metatranscriptome of marine sediment microbial communities off the coast of San Francisco CA United States - OC_4500m_C5_0cm5cm RNA-Seq METATRANSCRIPTOMIC other paired ILLUMINA Illumina NovaSeq 6000 Total DNA and RNA extracted from the same environmental sample. RNA was reverse transcribed to cDNA. Illumina Low Input RNASeq w/rRNA Depletion -4475 0-5 35.69 -123.08 2017-03-15 PRJNA620480 OC_4500m_C5_20cm25cm_MG SRR11832551 https://gold.jgi.doe.gov/srarun?id=SRR11832551 SRP262998 Marine sediment microbial communities off the coast of San Francisco CA United States - OC_4500m_C5_20cm25cm metagenome WGS METAGENOMIC RANDOM paired ILLUMINA Illumina NovaSeq 6000 Total DNA and RNA extracted from the same environmental sample. -4475 20-25 35.69 -123.08 2017-03-15 PRJNA654837 OC_500m_C5_0cm2cm_MG SRR12660003 https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR12660003 SRP282874 Marine sediment microbial communities off the coast of San Francisco CA United States - OC_500m_C5_0cm2cm metagenome WGS METAGENOMIC RANDOM paired ILLUMINA Illumina NovaSeq 6000 Total DNA and RNA extracted from the same environmental sample. -494 0-2.5 37.04 -121.30 2017-03-19 PRJNA654738 OC_500m_C5_0cm2cm_MT SRR12660288 https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR12660288 SRP282881 Metatranscriptome of marine sediment microbial communities off the coast of San Francisco CA United States - OC_500m_C5_0cm2cm RNA-Seq METATRANSCRIPTOMIC other paired ILLUMINA Illumina NovaSeq 6000 Total DNA and RNA extracted from the same environmental sample. RNA was reverse transcribed to cDNA. Illumina Low Input RNASeq w/rRNA Depletion -494 0-2.5 37.04 -121.30 2017-03-19 PRJNA654736 OC_500m_C5_10cm15cm_MG SRR12660349 https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR12660349 SRP282888 Marine sediment microbial communities off the coast of San Francisco CA United States - OC_500m_C5_10cm15cm metagenome WGS METAGENOMIC RANDOM paired ILLUMINA Illumina NovaSeq 6000 Total DNA and RNA extracted from the same environmental sample. -494 10-15 37.04 -121.30 2017-03-19 PRJNA380276 ocean_core6 SRR6760784 https://trace-ncbi-nlm-nih-gov/Traces/sra/?run=SRR6760784 SRP102379 ocean sediment sample OTHER METAGENOMIC size fractionation single ILLUMINA Illumina HiSeq 4000 Total DNA and RNA extracted from the same environmental sample. Read-cloud sequencing using 10x Chromium technology. -3535 0-2.5 36.61 -122.62 2017-03-17 PRJNA741258 OC_MC06_C5_0cm2cm nd nd nd Marine sediment microbial communities off the coast of San Francisco CA United States - OC_500m_C5_0cm2cm Chromium metagenome OTHER METAGENOMIC size fractionation single ILLUMINA Illumina HiSeq 4000 Total DNA and RNA extracted from the same environmental sample. Read-cloud sequencing using 10x Chromium technology. -494 0-2.5 37.04 -121.30 2017-03-19 PRJNA741258 OC_GC09_25cm30cm nd nd nd Marine sediment microbial communities off the coast of San Francisco CA United States - OC_GC09_25cm30cm Chromium metagenome OTHER METAGENOMIC size fractionation single ILLUMINA Illumina HiSeq 4000 Total DNA and RNA extracted from the same environmental sample. Read-cloud sequencing using 10x Chromium technology. -1488 25-30 36.94 -122.78 2017-03-20