Sensor data from trace-metal clean (GTC) CTD rosette on the US GEOTRACES GP17-ANT cruise in the Amundsen Sea on RVIB Nathaniel B. Palmer (NBP2401) from November 2023 to January 2024

Website: https://www.bco-dmo.org/dataset/1009865
Data Type: Cruise Results
Version: 1
Version Date: 2026-10-14

Project
» US GEOTRACES GP17 Section: Amundsen Sea Sector of the Antarctic Continental Margin (GP17-ANT) (GP17-ANT)

Program
» U.S. GEOTRACES (U.S. GEOTRACES)
ContributorsAffiliationRole
Sedwick, Peter N.Old Dominion University (ODU)Principal Investigator
Anderson, Robert F.Lamont-Doherty Earth Observatory (LDEO)Co-Principal Investigator
Lam, Phoebe J.University of California-Santa Cruz (UCSC)Co-Principal Investigator
Sherrell, Robert M.Rutgers UniversityCo-Principal Investigator
Giulivi, ClaudiaLamont-Doherty Earth Observatory (LDEO)Scientist
Rauch, ShannonWoods Hole Oceanographic Institution (WHOI BCO-DMO)BCO-DMO Data Manager

Abstract
This dataset comprises the sensor data from trace-metal clean CTD rosette ("GTC rosette") deployments in the Amundsen Sea and adjacent Southern Ocean during US GEOTRACES cruise GP17-ANT (RVIB Nathaniel B. Palmer cruise NBP24-01) in December 2023 and January 2024. The clean, processed sensor data from the GTC rosette downcasts are averaged (binned) over 2-decibar pressure intervals. The averaged data include sensor-based measurements of temperature, salinity, dissolved oxygen concentration, beam transmission (uncalibrated), chlorophyll fluorescence (uncalibrated), and turbidity (uncalibrated). The sensor data were processed and compiled by personnel of the Scripps Institution of Oceanography Oceanographic Data Facility (SIO-ODF).


Coverage

Location: Amundsen Sea sector of Southern Ocean
Spatial Extent: N:-66.9853 E:-99.714 S:-74.3816 W:-133.0165
Temporal Extent: 2023-12-08 - 2024-01-13

Methods & Sampling

Water-column sensor data were collected during downcast deployments of a trace-metal clean CTD rosette ("GTC rosette") system. The GTC rosette casts were performed using the U.S. GEOTRACES trace-element rosette sampling system with a SeaBird Electronics (SBE) custom-built frame and carousel and 24 x 12 liter (L) GoFlo sampler bottles. The system included an SBE CTD unit with pressure sensor, temperature sensors, conductivity sensors and membrane oxygen sensor, as well as a transmissometer, chlorophyll-a fluorometer, altimeter, and turbidity sensor. The package was deployed on a sheathed conducting cable with a Vectran strength member using a Dynacon winch. Further details are provided in the GP17-ANT cruise report (Sedwick et al., 2024) and in the ODF cruise report (Scripps Institution of Oceanography Ocean Data Facility team, 2024).

Instrumentation Details:
The GTC rosette casts were performed with a package consisting of the U.S. GEOTRACES SBE trace-element rosette frame and carousel, and 24 x 12 L GoFlo sampler bottles. Underwater electronic components primarily consisted of an SBE-9plus housing unit with a Digiquartz pressure sensor, dual SeaBird SBE-3 temperature sensors and SBE-4C conductivity sensors, an SBE-43 membrane dissolved oxygen sensor, and a WetLabs C-Star transmissometer and ECO-FL-RTD chlorophyll-a fluorometer.

Sensors were calibrated during summer 2023, immediately prior to the GP17-ANT cruise, and the transmissometer was calibrated before the start and after the end of science operations. The GTC rosette also included a Benthos altimeter, which ceased functioning during the latter part of the cruise and was replaced with a Valeport altimeter borrowed from the shipboard USAP equipment, and a Seapoint turbidity sensor. The CTD data acquisition system consisted of an SBE-11plus deck unit and a networked generic PC workstation running Windows 10. SBE SeaSave7 v.7.26.7.121 software was used for data acquisition and to close bottles on the rosette. Further details are provided in the GP17-ANT cruise report (Sedwick et al., 2024) and in the ODF cruise report (Scripps Institution of Oceanography Ocean Data Facility team, 2024).

Note: Cruise reports are attached as Supplemental Files and available at https://usgeotraces.ldeo.columbia.edu/content/gp17-ant.


Data Processing Description

Shipboard CTD data processing was performed after deployment using SIO/ODF CTD processing software ctdcal v. 0.1.4b. The CTD acquisition data were copied onto a Macintosh OS X system, then processed, and a downcast pressure series of sensor measurements averaged over 2-decibar pressure bins was created. The pressure-series dataset was submitted for CTD data distribution after corrections were applied. The CTD data were examined at the completion of each deployment for clean corrected sensor response and any calibration shifts. As bottle salinity and oxygen results became available (see GEOTRACES GP17-ANT Bottle Data for Nutrients and Hydrographic Parameters), they were used to refine conductivity and oxygen sensor calibrations. Temperature, salinity, and dissolved oxygen comparisons were made between downcasts and upcasts, as well as between groups of adjacent deployments. Further details of the CTD data processing are provided in the ODF cruise report (Scripps Institution of Oceanography Ocean Data Facility team, 2024).


BCO-DMO Curation Notes

This section documents curation actions performed prior to publication review with the submitter, and additional information relevant to understanding and reusing this dataset. It distinguishes changes made to the submitted (meta)data from unresolved issues and/or enhancements that improve future reuse and interoperability.

CURATION ACTIONS PERFORMED ON DATA

- Imported all 35 CTD cast files (.csv) into the BCO-DMO data processing system.
- Treated row 13 as header, skipped row 14 (units row); captured metadata key value lines (rows above header) into new columns EXPOCODE, SECT_ID, STNNBR, CASTNO, DATE, TIME, LATITUDE, LONGITUDE, INSTRUMENT_ID, and cast_depth via regex extraction.
- Concatenated all 35 files into a single table, mapping identical column names across tables and adding a file_name column captured from each source file name.
- Filtered out END_DATA sentinel rows (removed rows where CTDPRS equals 'END_DATA').
- Converted combined DATE (format %Y%m%d) and TIME (format %H%M) columns into a new ISO_DateTime_UTC string column in ISO 8601 UTC format (%Y-%m-%dT%H:%MZ).
- Reordered columns.
- Saved the final file as "1009865_v1_gp17-ant_gtc_ctd.csv".

CURATION ACTIONS PERFORMED ON METADATA

- BCO-DMO's standard metadata entry and text formatting steps were performed. See: https://www.bco-dmo.org/how-to/standard-curation-edits

ISSUES POTENTIALLY IMPACTING REUSE

- N/A


Problem Description

The CTD data analysis was impacted by a number of issues with the temperature, conductivity, and oxygen sensors, with further details provided in the ODF cruise report (Scripps Institution of Oceanography Ocean Data Facility team, 2024).

The data quality flags used for the CTD sensor parameters are as follows:

1: Not calibrated.

2: Acceptable measurement.

3: Questionable measurement.

4: Bad measurement.

5: Not reported.

6: Interpolated over a pressure interval larger than 2 dbar (typically applies to values for 0-2 dbar or 2-4 dbar).

7: Despiked.

9: Not sampled.

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Parameters

ParameterDescriptionUnits
EXPOCODE

cruise Expocode number

unitless
SECT_ID

cruise identifier

unitless
STNNBR

station number

unitless
CASTNO

CTD cast number

unitless
ISO_DateTime_UTC

Date and time (UTC) of CTD recovery in ISO 8601 format

unitless
DATE

CTD recovery date

unitless
TIME

CTD recovery time (UTC)

unitless
LATITUDE

CTD recovery latitude

decimal degrees
LONGITUDE

CTD recovery longitude

decimal degrees
INSTRUMENT_ID

INSTRUMENT_ID = 888 (GTC rosette)

unitless
cast_depth

CTD cast maximum depth

meters (m)
CTDPRS

pressure defining upper boundary of 2-decibar bin over which sensor readings are averaged

decibar
CTDTMP

processed sensor temperature (ITS-90 scale) averaged over 2-dbar pressure bin

degrees Celsius
CTDTMP_FLAG_W

data quality flag for CTDTMP (see Problems/Issues for quality flag definitions)

unitless
CTDSAL

processed sensor salinity (PSS-78 scale) averaged over 2-dbar pressure bin

unitless
CTDSAL_FLAG_W

data quality flag for CTDSAL (see Problems/Issues for quality flag definitions)

unitless
CTDOXY

processed sensor measurements of dissolved oxygen concentration (µmol kg-1) averaged over 2-dbar pressure bin

micromoles per kilogram
CTDOXY_FLAG_W

data quality flag for CTDOXY (see Problems/Issues for quality flag definitions)

unitless
CTDXMISS

processed uncalibrated measurements of beam transmission (0-5 volt DC scale) averaged over 2-dbar pressure bin

volts
CTDXMISS_FLAG_W

data quality flag for CTDXMISS (see Problems/Issues for quality flag definitions)

unitless
CTDFLUOR

processed uncalibrated measurements of chlorophyll-a fluorescence (0-5 volt DC scale) averaged over 2-dbar pressure bin

volts
CTDFLUOR_FLAG_W

data quality flag for CTDFLUOR (see Problems/Issues for quality flag definitions)

unitless
CTDTURB

processed uncalibrated measurements of turbidity (0-5 volt DC scale) averaged over 2-dbar pressure bin

volts
CTDTURB_FLAG_W

data quality flag for CTDTURB (see Problems/Issues for quality flag definitions)

unitless
file_name

name of the original CTD file for the cast

unitless


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Instruments

Dataset-specific Instrument Name
altimeter
Generic Instrument Name
Altimeter
Dataset-specific Description
The GTC rosette also included a Benthos altimeter, which ceased functioning during the latter part of the cruise and was replaced with a Valeport altimeter.
Generic Instrument Description
An instrument that measures height above a fixed surface. The data can be used to map ocean-surface topography and generate gridded surface height fields.

Dataset-specific Instrument Name
24 x 12 L GoFlo sampler bottles
Generic Instrument Name
GO-FLO Bottle
Generic Instrument Description
GO-FLO bottle cast used to collect water samples for pigment, nutrient, plankton, etc. The GO-FLO sampling bottle is specially designed to avoid sample contamination at the surface, internal spring contamination, loss of sample on deck (internal seals), and exchange of water from different depths.

Dataset-specific Instrument Name
SBE-43 membrane dissolved oxygen sensor
Generic Instrument Name
Sea-Bird SBE 43 Dissolved Oxygen Sensor
Generic Instrument Description
The Sea-Bird SBE 43 dissolved oxygen sensor is a redesign of the Clark polarographic membrane type of dissolved oxygen sensors. More information from the manufacturer: https://www.seabird.com/products/sbe-43-dissolved-oxygen-sensor

Dataset-specific Instrument Name
Trace-Metal Clean (GTC) CTD Rosette
Generic Instrument Name
Sea-Bird SBE 911plus CTD
Dataset-specific Description
The U.S. GEOTRACES trace element carousel sampling system (referred to as the GTC rosette), included a Dynacon winch with 7300 meters of sheathed conducting cable with Vectran strength member, block, clean laboratory van, a SeaBird custom-built carousel (newly purchased), and SBE-9/11plus CTD/deck unit, with 24 x 12 liter Go-Flo bottles (plus spares). Underwater electronic components primarily consisted of an SBE-9plus housing unit with a Digiquartz pressure sensor, dual SeaBird SBE-3 temperature sensors and SBE-4C conductivity sensors, an SBE-43 membrane dissolved oxygen sensor, and a WetLabs C-Star transmissometer and ECO-FL-RTD chlorophyll-a fluorometer. The GTC rosette also included a Benthos altimeter, which ceased functioning during the latter part of the cruise and was replaced with a Valeport altimeter borrowed from the shipboard USAP equipment, and a Seapoint turbidity sensor. The CTD data acquisition system consisted of an SBE-11plus deck unit and a networked generic PC workstation running Windows 10.
Generic Instrument Description
[tethered, real-time] The Sea-Bird SBE 911 plus is a type of CTD instrument package for continuous measurement of conductivity, temperature and pressure. The SBE 911 plus includes the SBE 9plus Underwater Unit and the SBE 11plus Deck Unit (for real-time readout using conductive wire) for deployment from a vessel. The combination of the SBE 9 plus and SBE 11 plus is called a SBE 911 plus. The SBE 9 plus uses Sea-Bird's standard modular temperature and conductivity sensors (SBE 3 plus and SBE 4). The SBE 9 plus CTD can be configured with up to eight auxiliary sensors to measure other parameters including dissolved oxygen, pH, turbidity, fluorescence, light (PAR), light transmission, etc.). more information from Sea-Bird Electronics

Dataset-specific Instrument Name
Seapoint turbidity sensor
Generic Instrument Name
Seapoint Turbidity Meter
Generic Instrument Description
The Seapoint Turbidity Meter detects light scattered by particles suspended in water, generating an output voltage proportional to turbidity or suspended solids.

Dataset-specific Instrument Name
WetLabs C-Star transmissometer
Generic Instrument Name
WET Labs {Sea-Bird WETLabs} C-Star transmissometer
Generic Instrument Description
The C-Star transmissometer has a novel monolithic housing with a highly integrated opto-electronic design to provide a low cost, compact solution for underwater measurements of beam transmittance. The C-Star is capable of free space measurements or flow-through sampling when used with a pump and optical flow tubes. The sensor can be used in profiling, moored, or underway applications. Available with a 6000 m depth rating. More information on Sea-Bird website: https://www.seabird.com/c-star-transmissometer/product?id=60762467717


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Deployments

NBP2401

Website
Platform
RVIB Nathaniel B. Palmer
Report
Start Date
2023-11-29
End Date
2024-01-28
Description
See more information at: R2R https://www.rvdata.us/search/cruise/NBP2401 BODC https://www.bodc.ac.uk/resources/inventories/cruise_inventory/report/18091/ US GEOTRACES https://usgeotraces.ldeo.columbia.edu/content/gp17-ant Description: The U.S. GEOTRACES GP17-ANT expedition departed Punta Arenas, Chile on November 29th, 2023 and arrived in Lyttelton, New Zealand on January 28th, 2024. The cruise took place in the Amundsen Sea aboard the R/V Nathaniel B. Palmer with a team of 35 scientists led by Peter Sedwick (Old Dominion University), Phoebe Lam (University of California, Santa Cruz), and Robert Sherrell (Rutgers University). GP17 was planned as a two-leg expedition, with its first leg (GP17-OCE) as a southward extension of the 2018 GP15 Alaska-Tahiti expedition and this second leg (GP17-ANT) into coastal and shelf waters of Antarctica's Amundsen Sea.


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Project Information

US GEOTRACES GP17 Section: Amundsen Sea Sector of the Antarctic Continental Margin (GP17-ANT) (GP17-ANT)


Coverage: Amundsen Sea Sector of the Antarctic Continental Margin


U.S. GEOTRACES extended its meridional transect, initiated on the 2018 GP15 Alaska-Tahiti expedition, south to the Antarctic ice edge and then east to Chile with GP17-OCE (December 2022 - January 2023). Because of the potentially important trace elements and isotopes (TEIs) inputs and transformations occurring in Antarctic waters and shelves, GP17 also had a second leg, GP17-ANT (November 29, 2023 - January 30, 2024) into coastal and shelf waters of Antarctica’s Amundsen Sea. Further information is available on the US GEOTRACES website.

NSF Project Title: Collaborative Research: Management and Implementation of US GEOTRACES GP17 Section: Amundsen Sea Sector of the Antarctic Continental Margin (GP17-ANT)

NSF Award Abstract:
This project will support the management and implementation of a 60-day research cruise to the Amundsen Sea sector of the Antarctic continental margin to collect samples for measurements of a broad suite of trace elements and isotopes ('TEIs'), as part of the U.S. GEOTRACES program. GEOTRACES is a global effort in the field of Chemical Oceanography, the goal of which is to understand the distributions of trace elements and their isotopes in the ocean. Determining the distributions of these elements and isotopes will increase the understanding of processes that shape their distributions and also the processes that depend on these elements. Key TEIs include essential micronutrients such as iron and zinc; 'tracers' such as aluminum, manganese, and isotopes of nitrogen, thorium and neodymium that can be used to investigate modern and ancient ocean processes; and elements such as lead that are indicative of human activities. In the Southern Ocean, the Antarctic continental margins are important as sources of micronutrient trace elements such as iron, which is required to support biological production and carbon export over the Antarctic shelf and in offshore waters of the Antarctic Circumpolar Current. Moreover, these regions are experiencing rapid environmental changes that are expected to impact oceanic circulation and biogeochemical cycles, for which TEIs provide crucial data needed to test and refine numerical models of the Earth system. The Amundsen Sea sector holds particular interest because of the pronounced, decadal-scale increases in the melting rates of glacial ice shelves that border the region, driven by intrusions of warm Circumpolar Deep Water onto the continental shelf. This melting has potentially major impacts on global sea level, on the formation of Antarctic Bottom Water in the Ross Sea, and on the regional ecosystem.

The cruise will comprise essential sampling operations (collection and shipboard processing) and ancillary measurements (hydrography, nutrients, algal pigments) in support of multiple, individual science projects, following the successful model of previous U.S. GEOTRACES cruises in the Atlantic, Pacific and Arctic ocean basins. The cruise will sample the ocean region between 100°W and 135°W, with stations ranging from 67°S in the Antarctic Circumpolar Current southward to the Amundsen Sea continental shelf, including stations adjacent to several rapidly melting ice shelves and in highly-productive shelf polynyas. Water column samples will be collected using conventional and trace-metal clean CTD-rosette systems, in-situ high-volume pumps, and a towed fish sampler or small boat, using established methods. Sampling time will also be provided for collection of sea ice, floating glacial ice, and seafloor sediments. To facilitate coordination with a complementary open-ocean cruise and ensure access to the study region to document the impact of biological processes, the cruise is planned for late austral summer (late January-late March). Beyond the disciplinary contributions, the proposed research will contribute knowledge concerning the cryosphere and its impacts on global sea level and ocean circulation, regional ecosystems and biological processes, ocean-atmosphere interactions, and past and future environmental change. The project will contribute to STEM education and outreach through the participation of an NSF-funded PolarTREC education professional, and a K-12 STEM program for students from underserved and underrepresented schools run by Rutgers University education specialists. To foster public engagement, the investigators will partner with the UCSC Science Communication Program to engage freelance science journalists to profile research in this spectacular and harsh Antarctic environment.



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Program Information

U.S. GEOTRACES (U.S. GEOTRACES)


Coverage: Global


GEOTRACES is a SCOR sponsored program; and funding for program infrastructure development is provided by the U.S. National Science Foundation.

GEOTRACES gained momentum following a special symposium, S02: Biogeochemical cycling of trace elements and isotopes in the ocean and applications to constrain contemporary marine processes (GEOSECS II), at a 2003 Goldschmidt meeting convened in Japan. The GEOSECS II acronym referred to the Geochemical Ocean Section Studies To determine full water column distributions of selected trace elements and isotopes, including their concentration, chemical speciation, and physical form, along a sufficient number of sections in each ocean basin to establish the principal relationships between these distributions and with more traditional hydrographic parameters;

* To evaluate the sources, sinks, and internal cycling of these species and thereby characterize more completely the physical, chemical and biological processes regulating their distributions, and the sensitivity of these processes to global change; and

* To understand the processes that control the concentrations of geochemical species used for proxies of the past environment, both in the water column and in the substrates that reflect the water column.

GEOTRACES will be global in scope, consisting of ocean sections complemented by regional process studies. Sections and process studies will combine fieldwork, laboratory experiments and modelling. Beyond realizing the scientific objectives identified above, a natural outcome of this work will be to build a community of marine scientists who understand the processes regulating trace element cycles sufficiently well to exploit this knowledge reliably in future interdisciplinary studies.

Expand "Projects" below for information about and data resulting from individual US GEOTRACES research projects.



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Funding

Funding SourceAward
NSF Antarctic Sciences (NSF ANT)
NSF Antarctic Sciences (NSF ANT)
NSF Antarctic Sciences (NSF ANT)

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