Bio Optical Profiler data from R/V Thomas G. Thompson cruises TT007, TT008, TT011, TT012 in the Equatorial Pacific in 1992 during the U.S. JGOFS Equatorial Pacific (EqPac) project

Website: https://www.bco-dmo.org/dataset/2664
Version: final
Version Date: 1995-06-16

Project
» U.S. JGOFS Equatorial Pacific (EqPac)

Program
» U.S. Joint Global Ocean Flux Study (U.S. JGOFS)
ContributorsAffiliationRole
Davis, CurtissNaval Research LaboratoryPrincipal Investigator
Trees, Charles C.San Diego State University (SDSU)Principal Investigator
Chandler, Cynthia L.Woods Hole Oceanographic Institution (WHOI BCO-DMO)BCO-DMO Data Manager


Dataset Description

Bio Optical Profiler Data


Methods & Sampling

See Platform deployments for cruise specific documentation


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Parameters

ParameterDescriptionUnits
eventevent/operation number from event log
stastation number fro event log
castoptical profile cast number
cast_typeeither upcast or downcast
latlatitude, negative = south decimal degrees
lonlongitude, negative = west decimal degrees
depthdepth_of_observation meters
Es_n456spectral irradiance above sea su wave length of 456nm uW/cm^2nm^-1*10^-3
Es_n488spectral irradiance above sea su wave length of 488nm uW/cm^2nm^-1*10^-3
Es_n532spectral irradiance above sea su wave length of 532nm uW/cm^2nm^-1*10^-3
Es_n670spectral irradiance above sea su wave length of 670nm uW/cm^2nm^-1*10^-3
Kd_452diffuse attenuation coefficient for Ed 452 m^-1*10^-4
Ed_452downwelled irradiance at wave length of 452 uW/cm^2nm^-1*10^-4
Kd_440diffuse attenuation coefficient for Ed 440 m^-1*10^-4
Ed_440downwelled irradiance at wave length of 440 uW/cm^2nm^-1*10^-4
Kd_486diffuse attenuation coefficient for Ed 486 m^-1*10^-4
Ed_486downwelled irradiance at wave length of 486 uW/cm^2nm^-1*10^-4
Kd_519diffuse attenuation coefficient for Ed 519 m^-1*10^-4
Ed_519downwelled irradiance at wave length of 519 uW/cm^2nm^-1*10^-4
Kd_530diffuse attenuation coefficient for Ed 530 m^-1*10^-4
Ed_530downwelled irradiance at wave length of 530 uW/cm^2nm^-1*10^-4
Kd_548diffuse attenuation coefficient for Ed 548 m^-1*10^-4
Ed_548downwelled irradiance at wave length of 548 uW/cm^2nm^-1*10^-4
Kd_589diffuse attenuation coefficient for Ed 589 m^-1*10^-4
Ed_589downwelled irradiance at wave length of 589 uW/cm^2nm^-1*10^-4
Kd_632diffuse attenuation coefficient for Ed 632 m^-1*10^-4
Ed_632downwelled irradiance at wave length of 632 uW/cm^2nm^-1*10^-4
Kd_655diffuse attenuation coefficient for Ed 655 m^-1*10^-4
Ed_655downwelled irradiance at wave length of 655 uW/cm^2nm^-1*10^-4
Kd_670diffuse attenuation coefficient for Ed 670 m^-1*10^-4
Ed_670downwelled irradiance at wave length of 670 uW/cm^2nm^-1*10^-4
Kd_696diffuse attenuation coefficient for Ed 696 m^-1*10^-4
Ed_696downwelled irradiance at wave length of 696 uW/cm^2nm^-1*10^-4
K_pardiffuse attenuation coefficient for E par m^-1*10^-4
E_parunderwater photosynthetically available radiation uE/m^2/sec*10^-4
Ku_439diffuse attenuation coefficient for Eu 439 m^-1*10^-4
Eu_439upwelled irradiance at wave length of 439 uW/cm^2nm^-1*10^-4
Ku_453diffuse attenuation coefficient for Eu 453 m^-1*10^-4
Eu_453upwelled irradiance at wave length of 453 uW/cm^2nm^-1*10^-4
Ku_486diffuse attenuation coefficient for Eu 486 m^-1*10^-4
Eu_486upwelled irradiance at wave length of 486 uW/cm^2nm^-1*10^-4
Ku_529diffuse attenuation coefficient for Eu 529 um^-1*10^-4
Eu_529upwelled irradiance at wave length of 529 uW/cm^2nm^-1*10^-4
Ku_549diffuse attenuation coefficient for Eu 549 m^-1*10^-4
Eu_549upwelled irradiance at wave length of 549 uW/cm^2nm^-1*10^-4
Ku_589diffuse attenuation coefficient for Eu 589 m^-1*10^-4
Eu_589upwelled irradiance at wave length of 589 uW/cm^2nm^-1*10^-4
Ku_632diffuse attenuation coefficient for Eu 632 m^-1*10^-4
Eu_632upwelled irradiance at wave length of 632 uW/cm^2nm^-1*10^-4
Ku_670diffuse attenuation coefficient for Eu 670
Eu_670upwelled irradiance at wave length of 670 uW/cm^2nm^-1*10^-4
Kl_442diffuse attenuation coefficient for Lu 442 m^-1*10^-4
Lu_442upwelled radiance at wave length of 442 uW/cm^2nm^-1sr^-1*10^-5
Kl_456diffuse attenuation coefficient for Lu 456 m^-1*10^-4
Lu_456upwelled radiance at wave length of 456 uW/cm^2nm^-1sr^-1*10^-5
Kl_489diffuse attenuation coefficient for Lu 489 m^-1*10^-4
Lu_489upwelled radiance at wave length of 489 uW/cm^2nm^-1sr^-1*10^-5
Kl_531diffuse attenuation coefficient for Lu 531 m^-1*10^-4
Lu_531upwelled radiance at wave length of 531 uW/cm^2nm^-1sr^-1*10^-5
Kl_550diffuse attenuation coefficient for Lu 550 m^-1*10^-4
Lu_550upwelled radiance at wave length of 550 uW/cm^2nm^-1sr^-1*10^-5
Kl_590diffuse attenuation coefficient for Lu 590 m^-1*10^-4
Lu_590upwelled radiance at wave length of 590 uW/cm^2nm^-1sr^-1*10^-5
Kl_711diffuse attenuation coefficient for Lu 711 m^-1*10^-4
Lu_711upwelled radiance at wave length of 711 uW/cm^2nm^-1sr^-1*10^-5
tempCTD derived water temperature millidegrees C
beamparticle beam attenuation coefficient meters
fluorchlorophyll-a fluorescence millivolts
yearyear as YY
monmonth as MM
dayday as DD
timetime in local hours and minutes
commentsky conditions etc.
pts_per_meternumber of original points per one meter bin count
tiltinstrument tilt degrees range -45 to 45
rollinstrument roll degrees range -45 to 45
salCTD salinity calculated from conductivity PPT
condCTD conductivity
sigmacalculated density
paruwdownwelling scalar PAR at depth E17 quanta/sec/cm^2
ed_410downwelling spectral irradiance at depth uW/cm^2/nm
ed_441downwelling spectral irradiance at depth uW/cm^2/nm
ed_488downwelling spectral irradiance at depth uW/cm^2/nm
ed_520downwelling spectral irradiance at depth uW/cm^2/nm
ed_550downwelling spectral irradiance at depth uW/cm^2/nm
ed_560downwelling spectral irradiance at depth uW/cm^2/nm
ed_633downwelling spectral irradiance at depth uW/cm^2/nm
ed_656downwelling spectral irradiance at depth uW/cm^2/nm
ed_671downwelling spectral irradiance at depth uW/cm^2/nm
ed_683downwelling spectral irradiance at depth uW/cm^2/nm
ed_694downwelling spectral irradiance at depth uW/cm^2/nm
ed_710downwelling spectral irradiance at depth uW/cm^2/nm
eu_410upwelling spectral irradiance at depth uW/cm^2/nm
eu_441upwelling spectral irradiance at depth uW/cm^2/nm
eu_488upwelling spectral irradiance at depth uW/cm^2/nm
eu_520upwelling spectral irradiance at depth uW/cm^2/nm
eu_550upwelling spectral irradiance at depth uW/cm^2/nm
eu_671upwelling spectral irradiance at depth uW/cm^2/nm
eu_694upwelling spectral irradiance at depth uW/cm^2/nm
lu_410upwelling spectral radiance at depth uW/cm^2/nm/str
lu_441upwelling spectral radiance at depth uW/cm^2/nm/str
lu_488upwelling spectral radiance at depth uW/cm^2/nm/str
lu_520upwelling spectral radiance at depth uW/cm^2/nm/str
lu_633upwelling spectral radiance at depth uW/cm^2/nm/str
lu_656upwelling spectral radiance at depth uW/cm^2/nm/str
lu_683upwelling spectral radiance at depth uW/cm^2/nm/str
e_410spectral irradiance above sea surface uW/cm^2/nm
e_520spectral irradiance above sea surface uW/cm^2/nm
e_589spectral irradiance above sea surface uW/cm^2/nm
e_683spectral irradiance above sea surface uW/cm^2/nm
Kd_518diffuse attenuation coefficient for Ed_519 m^-1*10^-4
Ed_518downwelled irradiance at wave length of 519 uW/cm^2nm^-1*10^-4
Kd_669diffuse attenuation coefficient for Ed_670 m^-1*10^-4
Ed_669downwelled irradiance at wave length of 670 uW/cm^2nm^-1*10^-4
Kl_455diffuse attenuation coefficient for Lu_456 m^-1*10^-4
Lu_455upwelled radiance at wave length of 456 uW/cm^2nm^-1sr^-1*10^-5
Kl_591diffuse attenuation coefficient for Lu_590 m^-1*10^-4
Lu_591upwelled radiance at wave length of 590 uW/cm^2nm^-1sr^-1*10^-5
Kl_685diffuse attenuation coefficient for Lu_685 m^-1*10^-4
Lu_685upwelled radiance at wave length of 685 uW/cm^2nm^-1sr^-1*10^-5


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Instruments

Dataset-specific Instrument Name
Bio-Optical Profiling System
Generic Instrument Name
Bio-Optical Profiling System
Generic Instrument Description
Bio-Optical Profiling System (BOPS) is an updated version of the BOPS originally developed by Smith et al. (1984) and is used to collect optical data. The heart of the BOPS is a Biospherical instruments MER-1048 Spectroradiometer which measures up and downwelling spectral irradiance and upwelling spectral radiance. The MER-1048 also has sensors for Photosynthetically Available Radiation (PAR), depth, tilt and roll. In addition, temperature and conductivity are measured with a Sea-Bird CTD, chlorophyll fluorescence is measured with a Sea Tech fluorometer and beam transmission with a Sea Tech 25-cm transmissometer. The Mer-1048 acquires all the data 16 times a second, averages it to four records a second and sends it up the cable to a deck box and a Compaq-286 computer which stores the data on the hard disk. Additionally, a deck cell measures the downwelling surface irradiance in four spectral channels. Also surface PAR is measured continuously using a Biospherical Instruments QSR-240 Integrating PAR sensor. The profile data is commonly filtered to remove obvious data spikes and then binned into one-meter averages. Raymond C. Smith, Charles R. Booth, and Jeffrey L. Star, "Oceanographic biooptical profiling system," Appl. Opt. 23, 2791-2797 (1984).


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Deployments

TT007

Website
Platform
R/V Thomas G. Thompson
Start Date
1992-01-30
End Date
1992-03-13
Description
Purpose: Spring Survey Cruise; 12°N-12°S at 140°W TT007 was one of five cruises conducted in 1992 in support of the U.S. Equatorial Pacific (EqPac) Process Study. The five EqPac cruises aboard R/V Thomas G. Thompson included two repeat meridional sections (12°N - 12°S), 2 equatorial surveys, and a benthic survey (all at 140° W). The scientific objectives of this study were to observe the processes in the Equatorial Pacific controlling the fluxes of carbon and related elements between the atmosphere, euphotic zone, and deep ocean. As luck would have it, the survey window coincided with an El Nino event. A bonus for the research team.

Methods & Sampling
PI: Chuck Trees of: San Diego State University dataset: Bio Optical Profiler Data dates: February 04, 1992 to March 08, 1992 location: N: 12.0147 S: -12.0293 W: -140.434 E: -134.9978 project/cruise: EQPAC/TT007 - Spring Survey ship: Thomas Thompson note: Surface irradiance (Es_n) wave lengths are only relative values and should not be used as absolute values. These data are used for internal processing of the radiometric data. EqPac Protocol 24

TT008

Website
Platform
R/V Thomas G. Thompson
Start Date
1992-03-19
End Date
1992-04-15
Description
Purpose: Spring Time Series; Equator, 140°W TT008 was one of five cruises conducted in 1992 in support of the U.S. Equatorial Pacific (EqPac) Process Study. The five EqPac cruises aboard R/V Thomas G. Thompson included two repeat meridional sections (12°N - 12°S), 2 equatorial surveys, and a benthic survey (all at 140° W). The scientific objectives of this study were to observe the processes in the Equatorial Pacific controlling the fluxes of carbon and related elements between the atmosphere, euphotic zone, and deep ocean. As luck would have it, the survey window coincided with an El Nino event. A bonus for the research team.

Methods & Sampling
PI: Curt Davis of: Naval Research Laboratory dataset: Bio-Optical Profiler Data dates: March 25, 1992 to April 14, 1992 location: N: 9.0012 S: -0.0365 W: -140.029 E: -139.859 project/cruise: EQPAC/TT008 - Spring time Series ship: Thomas Thompson PI-Notes EqPac Protocol 24

TT011

Website
Platform
R/V Thomas G. Thompson
Start Date
1992-08-05
End Date
1992-09-18
Description
Purpose: Fall Survey; 12°N-12°S at 140°W TT011 was one of five cruises conducted in 1992 in support of the U.S. Equatorial Pacific (EqPac) Process Study. The five EqPac cruises aboard R/V Thomas G. Thompson included two repeat meridional sections (12°N - 12°S), 2 equatorial surveys, and a benthic survey (all at 140° W). The scientific objectives of this study were to observe the processes in the Equatorial Pacific controlling the fluxes of carbon and related elements between the atmosphere, euphotic zone, and deep ocean. As luck would have it, the survey window coincided with an El Nino event. A bonus for the research team.

Methods & Sampling
PI: Chuck Trees of: San Diego State University dataset: Bio-Optical Profiler Data dates: August 10, 1992 to September 13, 1992 location: N: 12.0033 S: -11.9217 W: -140.84 E: -134.9467 project/cruise: EQPAC/TT011 - Fall Survey ship: Thomas Thompson PI-Notes: Surface irradiance (Es_n) wave lengths are only relative values and should not be used as absolute values. These data are used for internal processing of the radiometric data. EqPac Protocol 24

TT012

Website
Platform
R/V Thomas G. Thompson
Start Date
1992-09-24
End Date
1992-10-21
Description
Purpose: Fall Time Series; Equator, 140°W TT012 was one of five cruises conducted in 1992 in support of the U.S. Equatorial Pacific (EqPac) Process Study. The five EqPac cruises aboard R/V Thomas G. Thompson included two repeat meridional sections (12°N - 12°S), 2 equatorial surveys, and a benthic survey (all at 140° W). The scientific objectives of this study were to observe the processes in the Equatorial Pacific controlling the fluxes of carbon and related elements between the atmosphere, euphotic zone, and deep ocean. As luck would have it, the survey window coincided with an El Nino event. A bonus for the research team.

Methods & Sampling
PI: Curt Davis of: Naval Research Laboratory dataset: Bio-Optical Profiler Data dates: September 26, 1992 to October 21, 1992 location: N: 0.0645 S: -11.9958 W: -145.3995 E: -139.8992 project/cruise: EQPAC/TT012 - Fall Time Series ship: Thomas Thompson PI-Notes EqPac Protocol 24


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Project Information

U.S. JGOFS Equatorial Pacific (EqPac)


Coverage: Equatorial Pacific


The U.S. EqPac process study consisted of repeat meridional sections (12°N -12°S) across the equator in the central and eastern equatorial Pacific from 95°W to 170°W during 1992. The major scientific program was focused at 140° W consisting of two meridional surveys, two equatorial surveys, and a benthic survey aboard the R/V Thomas Thompson. Long-term deployments of current meter and sediment trap arrays augmented the survey cruises. NOAA conducted boreal spring and fall sections east and west of 140°W from the R/V Baldridge and R/V Discoverer. Meteorological and sea surface observations were obtained from NOAA's in place TOGA-TAO buoy network.

The scientific objectives of this study were to determine the fluxes of carbon and related elements, and the processes controlling these fluxes between the Equatorial Pacific euphotic zone and the atmosphere and deep ocean. A broad overview of the program at the 140°W site is given by Murray et al. (Oceanography, 5: 134-142, 1992). A full description of the Equatorial Pacific Process Study, including the international context and the scientific results, appears in a series of Deep-Sea Research Part II special volumes:

Topical Studies in Oceanography, A U.S. JGOFS Process Study in the Equatorial Pacific (1995), Deep-Sea Research Part II, Volume 42, No. 2/3.

Topical Studies in Oceanography, A U.S. JGOFS Process Study in the Equatorial Pacific. Part 2 (1996), Deep-Sea Research Part II, Volume 43, No. 4/6.

Topical Studies in Oceanography, A U.S. JGOFS Process Study in the Equatorial Pacific (1997), Deep-Sea Research Part II, Volume 44, No. 9/10.

Topical Studies in Oceanography, The Equatorial Pacific JGOFS Synthesis (2002), Deep-Sea Research Part II, Volume 49, Nos. 13/14.



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Program Information

U.S. Joint Global Ocean Flux Study (U.S. JGOFS)


Coverage: Global


The United States Joint Global Ocean Flux Study was a national component of international JGOFS and an integral part of global climate change research.

The U.S. launched the Joint Global Ocean Flux Study (JGOFS) in the late 1980s to study the ocean carbon cycle. An ambitious goal was set to understand the controls on the concentrations and fluxes of carbon and associated nutrients in the ocean. A new field of ocean biogeochemistry emerged with an emphasis on quality measurements of carbon system parameters and interdisciplinary field studies of the biological, chemical and physical process which control the ocean carbon cycle. As we studied ocean biogeochemistry, we learned that our simple views of carbon uptake and transport were severely limited, and a new "wave" of ocean science was born. U.S. JGOFS has been supported primarily by the U.S. National Science Foundation in collaboration with the National Oceanic and Atmospheric Administration, the National Aeronautics and Space Administration, the Department of Energy and the Office of Naval Research. U.S. JGOFS, ended in 2005 with the conclusion of the Synthesis and Modeling Project (SMP).



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