http://lod.bco-dmo.org/id/dataset/2818
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2010-06-16
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Pigments from HPLC analysis of bottle samples from SOFeX cruisse PS02_2002, COOK19MV, DRFT08RR from the Southern Ocean, south of New Zealand, Southern Ocean in 2002 (SOFeX project)
2007-02-09
publication
2007-02-09
revision
BCO-DMO Linked Data URI
2007-02-09
creation
http://lod.bco-dmo.org/id/dataset/2818
Robert R. Bidigare
University of Hawaiʻi at Mānoa
principalInvestigator
Michael R. Landry
University of California-San Diego Scripps
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Bidigare, R. R., Landry, M. R. (2007) Pigments from HPLC analysis of bottle samples from SOFeX cruisse PS02_2002, COOK19MV, DRFT08RR from the Southern Ocean, south of New Zealand, Southern Ocean in 2002 (SOFeX project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 09 February 2007) Version Date 2007-02-09 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/2818 [access date]
pigments from HPLC analysis of bottle samples Methods and Sampling: <pre>
dates: 18 February 2002 to 20 February 2002 (20020218-20020220)
location: N: -65.85 S: -66.57 W: -172.93 E: -171.95
project/cruise: SOFeX/USCGC Polar Star (WAGB-10) cruise: PS02
Methodology: HPLC pigment analysis methods described in:
Bidigare, R. R., L. Van Heukelem and C. C. Trees. 2005. Analysis of algal
pigments by high-performance liquid chromatography. In: Algal Culturing
Techniques (R. A. Andersen, Ed.), Academic Press, New York, pp. 327-345.
</pre>
completed
Robert R. Bidigare
University of Hawaiʻi at Mānoa
(808) 956-8146
Department of Oceanography University of Hawaii
Honolulu
HI
96822
USA
bidigare@soest.hawaii.edu
pointOfContact
Michael R. Landry
University of California-San Diego Scripps
858-534-4702
9500 Gilman Drive Mail Code: 0227
La Jolla
CA
92093-0227
USA
mlandry@ucsd.edu
pointOfContact
asNeeded
Dataset Version: 09 February 2007
Unknown
event
DoY
yrDay
date
time
lon
lat
station
bot
depth
chlide_a
chl_c
peridinin
fucox_but
fucox
fucox_hex
diadinox
allox
diatox
chl_b
chl_a
carotene_b
chlide_chl_a
patch_loc
event_SFX
event_MV
ev_type
sta
Niskin Bottle
theme
None, User defined
event
No BCO-DMO term
year day (Day of Year, or day of year and decimal time)
date
time of day
longitude
latitude
station
bottle number
depth
chlorophyllide a
chlorophyll c total
peridinin
19-prime-butanoyloxyfucoxanthin
fucoxanthin
19-prime-hexanoyloxyfucoxanthin
diadinoxanthin
alloxanthin
diatoxanthin
chlorophyll b
chlorophyll a
carotene-beta
station number
featureType
BCO-DMO Standard Parameters
Niskin bottle
instrument
BCO-DMO Standard Instruments
PS02_2002
COOK19MV
DRFT08RR
service
Deployment Activity
Southern Ocean, south of New Zealand
Southern Ocean
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Ocean Carbon and Biogeochemistry
http://us-ocb.org/
Ocean Carbon and Biogeochemistry
The Ocean Carbon and Biogeochemistry (OCB) program focuses on the ocean's role as a component of the global Earth system, bringing together research in geochemistry, ocean physics, and ecology that inform on and advance our understanding of ocean biogeochemistry. The overall program goals are to promote, plan, and coordinate collaborative, multidisciplinary research opportunities within the U.S. research community and with international partners. Important OCB-related activities currently include: the Ocean Carbon and Climate Change (OCCC) and the North American Carbon Program (NACP); U.S. contributions to IMBER, SOLAS, CARBOOCEAN; and numerous U.S. single-investigator and medium-size research projects funded by U.S. federal agencies including NASA, NOAA, and NSF.
The scientific mission of OCB is to study the evolving role of the ocean in the global carbon cycle, in the face of environmental variability and change through studies of marine biogeochemical cycles and associated ecosystems.
The overarching OCB science themes include improved understanding and prediction of: 1) oceanic uptake and release of atmospheric CO2 and other greenhouse gases and 2) environmental sensitivities of biogeochemical cycles, marine ecosystems, and interactions between the two.
The OCB Research Priorities (updated January 2012) include: ocean acidification; terrestrial/coastal carbon fluxes and exchanges; climate sensitivities of and change in ecosystem structure and associated impacts on biogeochemical cycles; mesopelagic ecological and biogeochemical interactions; benthic-pelagic feedbacks on biogeochemical cycles; ocean carbon uptake and storage; and expanding low-oxygen conditions in the coastal and open oceans.
OCB
largerWorkCitation
program
Iron Synthesis
https://osprey.bco-dmo.org/program/2017
Iron Synthesis
The two main objectives of the Iron Synthesis program (SCOR Working Group proposal, 2005), are:
1. Data compilation: assembling a common open-access database of the in situ iron experiments, beginning with the first period (1993-2002; Ironex-1, Ironex-2, SOIREE, EisenEx, SEEDS-1; SOFeX, SERIES) where primary articles have already been published, to be followed by the 2004 experiments where primary articles are now in progress (EIFEX, SEEDS-2; SAGE, FeeP); similarly for the natural fertilizations S.O.JGOFS (1992), CROZEX (2004/2005) and KEOPS (2005).
2. Modeling and data synthesis of specific aspects of two or more such experiments for various topics such as physical mixing, phytoplankton productivity, overall ecosystem functioning, iron chemistry, CO2 budgeting, nutrient uptake ratios, DMS(P) processes, and combinations of these variables and processes.
SCOR Working Group proposal, 2005. "The Legacy of in situ Iron Enrichments: Data Compilation and Modeling".
http://www.scor-int.org/Working_Groups/wg131.htm
See also: SCOR Proceedings Vol. 42 Concepcion, Chile October 2006, pgs: 13-16 2.3.3 Working Group on The Legacy of in situ Iron Enrichments: Data Compilation and Modeling.
The first objective of the Iron Synthesis program involves a data recovery effort aimed at assembling a common, open-access database of data and metadata from a series of in-situ ocean iron fertilization experiments conducted between 1993 and 2005. Initially, funding for this effort is being provided by the Scientific Committee on Oceanic Research (SCOR) and the U.S. National Science Foundation (NSF).
Through the combined efforts of the principal investigators of the individual projects and the staff of Biological and Chemical Oceanography Data Management Office (BCO-DMO), data currently available primarily through individuals, disparate reports and data agencies, and in multiple formats, are being collected and prepared for addition to the BCO-DMO database from which they will be freely available to the community.
As data are contributed to the BCO-DMO office, they are organized into four overlapping categories:
1. Level 1, basic metadata
(e.g., description of project/study, general location, PI(s), participants);
2. Level 2, detailed metadata and basic shipboard data and routine ship's operations
(e.g., CTDs, underway measurements, sampling event logs);
3. Level 3, detailed metadata and data from specialized observations
(e.g., discrete observations, experimental results, rate measurements) and
4. Level 4, remaining datasets
(e.g., highest level of detailed data available from each study).
Collaboration with BCO-DMO staff began in March of 2008 and initial efforts have been directed toward basic project descriptions, levels 1 and 2 metadata and basic data, with detailed and more detailed data files being incorporated as they become available and are processed.
Related file
Program Documentation
The Iron Synthesis Program is funded jointly by the Scientific Committee on Oceanic Research (SCOR) and the U.S. National Science Foundation (NSF).
FeSynth
largerWorkCitation
program
Southern Ocean Iron Experiment
http://www.mbari.org/expeditions/SOFeX2002/
Southern Ocean Iron Experiment
<p>Before he passed away in 1993, John Martin suggested that an increase in the flow of iron-rich dust to the ocean causes phytoplankton (single celled algae) to grow. The increased photosynthesis removes carbon dioxide from surface waters as the algae create biomass. This carbon dioxide is replaced by carbon dioxide gas that flows into the sea from the atmosphere. Reduced carbon dioxide in the atmosphere cools the planet (CO2 is a greenhouse gas that warms the earth). The results of this work, funded by the National Science Foundation, the Department of Energy, and the US Coast Guard, will be a much better understanding of how biological processes may regulate climate. (see Related Info: Fe cycle)</p>
<p>A direct test of the 'Martin Hypothesis' that trace concentrations of Fe are responsible for phytoplankton's ability to grow by direct experimental addition of Fe to the surface waters. Consequently the distribution of bioavailable Fe in the surface waters determines large geographical areas primary production and the following flux of fixed organic matter to the deep sea. The aim of the SOFeX project is to investigate the effects of iron fertilization on the productivity of the Southern Ocean. The results of this work will contribute significantly to our understanding of important biogeochemical processes which bear directly on the global carbon cycle, atmospheric carbon dioxide concentration, and climate control.</p>
<p>The SOFeX-N and SOFeX-S designations are sometimes used to distinguish between two iron enriched patches - one in low silicate waters north of the polar front (SOFEX-N), and the other in high silicate waters south of the polar front (SOFEX-S). All three ships, Melville (MV), Revelle (RR) and Polar Star (PS), worked in SOFEX-S, but only the Revelle and Melville worked in the SOFeX N patch and shuttled between the two patches.</p>
SOFeX
largerWorkCitation
project
eng; USA
oceans
Southern Ocean, south of New Zealand; Southern Ocean
2007-02-09
Southern Ocean, south of New Zealand
0
BCO-DMO catalogue of parameters from Pigments from HPLC analysis of bottle samples from SOFeX cruisse PS02_2002, COOK19MV, DRFT08RR from the Southern Ocean, south of New Zealand, Southern Ocean in 2002 (SOFeX project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/15387.rdf
Name: event
Units: DDMMYY_hhmm
Description: <p>unique sampling event composite of day, month, year and time (GMT)</p>
http://lod.bco-dmo.org/id/dataset-parameter/15388.rdf
Name: DoY
Units: DoY
Description: <p>day of year sampling began (UTC)</p>
http://lod.bco-dmo.org/id/dataset-parameter/15389.rdf
Name: yrDay
Units: DoY.dd
Description: <p>day of year sampling began (UTC)</p>
http://lod.bco-dmo.org/id/dataset-parameter/15390.rdf
Name: date
Units: YYYYMMDD
Description: <p>date sampling began (GMT)</p>
http://lod.bco-dmo.org/id/dataset-parameter/15391.rdf
Name: time
Units: hhmm
Description: <p>time sampling began (GMT)</p>
http://lod.bco-dmo.org/id/dataset-parameter/15392.rdf
Name: lon
Units: decimal degrees
Description: <p>longitude, negative denotes West</p>
http://lod.bco-dmo.org/id/dataset-parameter/15393.rdf
Name: lat
Units: decimal degrees
Description: <p>latitude, negative denotes South</p>
http://lod.bco-dmo.org/id/dataset-parameter/15394.rdf
Name: station
Units: dimensionless
Description: <p>station location name</p>
http://lod.bco-dmo.org/id/dataset-parameter/15395.rdf
Name: bot
Units: dimensionless
Description: <p>Rosette bottle number</p>
http://lod.bco-dmo.org/id/dataset-parameter/15396.rdf
Name: depth
Units: meters
Description: <p>depth, calculated from pressure</p>
http://lod.bco-dmo.org/id/dataset-parameter/15397.rdf
Name: chlide_a
Units: nanograms/liter
Description: <p>Chlorophyllide a; CHLDA</p>
http://lod.bco-dmo.org/id/dataset-parameter/15398.rdf
Name: chl_c
Units: nanograms/liter
Description: <p>Chlorophyll c; CHLC</p>
http://lod.bco-dmo.org/id/dataset-parameter/15399.rdf
Name: peridinin
Units: nanograms/liter
Description: <p>Peridinin; PER</p>
http://lod.bco-dmo.org/id/dataset-parameter/15400.rdf
Name: fucox_but
Units: nanograms/liter
Description: <p>19'-butanoyloxyfucoxanthin; BUT</p>
http://lod.bco-dmo.org/id/dataset-parameter/15401.rdf
Name: fucox
Units: nanograms/liter
Description: <p>Fucoxanthin; FUCO</p>
http://lod.bco-dmo.org/id/dataset-parameter/15402.rdf
Name: fucox_hex
Units: nanograms/liter
Description: <p>19'-hexanoyloxyfucoxanthin; HEX</p>
http://lod.bco-dmo.org/id/dataset-parameter/15403.rdf
Name: diadinox
Units: nanograms/liter
Description: <p>Diadinoxanthin; DDX</p>
http://lod.bco-dmo.org/id/dataset-parameter/15404.rdf
Name: allox
Units: nanograms/liter
Description: <p>Alloxanthin; ALLOX</p>
http://lod.bco-dmo.org/id/dataset-parameter/15405.rdf
Name: diatox
Units: nanograms/liter
Description: <p>Diatoxanthin; DTX</p>
http://lod.bco-dmo.org/id/dataset-parameter/15406.rdf
Name: chl_b
Units: nanograms/liter
Description: <p>Chlorophyll b; CHLB</p>
http://lod.bco-dmo.org/id/dataset-parameter/15407.rdf
Name: chl_a
Units: nanograms/liter
Description: <p>Chlorophyll a; CHLA</p>
http://lod.bco-dmo.org/id/dataset-parameter/15408.rdf
Name: carotene_b
Units: nanograms/liter
Description: <p>beta-carotene; B-CAR</p>
http://lod.bco-dmo.org/id/dataset-parameter/15409.rdf
Name: chlide_chl_a
Units: nanograms/liter
Description: <p>Chlorophyllide a plus chlorophyll a; TCHLA </p>
http://lod.bco-dmo.org/id/dataset-parameter/15410.rdf
Name: patch_loc
Units: dimensionless
Description: <p>sampling location relative to patch (see explanation in cruise event log)</p>
http://lod.bco-dmo.org/id/dataset-parameter/15411.rdf
Name: event_SFX
Units: YYYYdoYhhmm
Description: <p>unique SOFeX sampling event from multi-ship event log</p>
http://lod.bco-dmo.org/id/dataset-parameter/15412.rdf
Name: event_MV
Units: doYhhmm
Description: <p>unique sampling event composite of day of year and time (UTC) (same format as Melville events)</p>
http://lod.bco-dmo.org/id/dataset-parameter/15413.rdf
Name: ev_type
Units: dimensionless
Description: <p>event type descriptor string</p>
http://lod.bco-dmo.org/id/dataset-parameter/15414.rdf
Name: sta
Units: dimensionless
Description: <p>station location number</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
19877
https://datadocs.bco-dmo.org/file/qAnGPzjtkY8R93/pigments_COOK19MV.csv
pigments_COOK19MV.csv
version 30 January 2007
PI: Robert Bidigare and Michael Landry
SOFeX cruise: R/V Melville
HPLC pigment analysis
download
30346
https://datadocs.bco-dmo.org/file/OJDO137hNlnW78/pigments_DRFT08RR.csv
pigments_DRFT08RR.csv
version 13 February 2008
previous version 28 March 2007
PI: Robert Bidigare and Michael Landry
SOFeX cruise: R/V Revelle
HPLC pigment analysis
download
1950
https://datadocs.bco-dmo.org/file/k6LyJEYI5rvVjR/pigments_PS02_2002.csv
pigments_PS02_2002.csv
version 09 February 2007
PI: Robert Bidigare and Michael Landry
SOFeX cruise: US CGC POLAR STAR (WAGB-10) cruise: PS02
HPLC pigment analysis
download
https://osprey.bco-dmo.org/dataset/2818/data/download
download
onLine
dataset
<pre>
dates: 18 February 2002 to 20 February 2002 (20020218-20020220)
location: N: -65.85 S: -66.57 W: -172.93 E: -171.95
project/cruise: SOFeX/USCGC Polar Star (WAGB-10) cruise: PS02
Methodology: HPLC pigment analysis methods described in:
Bidigare, R. R., L. Van Heukelem and C. C. Trees. 2005. Analysis of algal
pigments by high-performance liquid chromatography. In: Algal Culturing
Techniques (R. A. Andersen, Ed.), Academic Press, New York, pp. 327-345.
</pre>
from Cruise: PS02_2002 <pre>
dates: 18 February 2002 to 20 February 2002 (20020218-20020220)
location: N: -65.85 S: -66.57 W: -172.93 E: -171.95
project/cruise: SOFeX/USCGC Polar Star (WAGB-10) cruise: PS02
Methodology: HPLC pigment analysis methods described in:
Bidigare, R. R., L. Van Heukelem and C. C. Trees. 2005. Analysis of algal
pigments by high-performance liquid chromatography. In: Algal Culturing
Techniques (R. A. Andersen, Ed.), Academic Press, New York, pp. 327-345.
</pre>
from Cruise: COOK19MV <pre>
dates: 29 January 2002 to 14 February 2002 (20020129-20020214)
location: N: -65.89 S: -66.61 W: -172.30 E: -171.00
project/cruise: SOFeX/MV
platform: R/V Melville
Methodology: HPLC pigment analysis methods described in:
Bidigare, R. R., L. Van Heukelem and C. C. Trees. 2005. Analysis of algal
pigments by high-performance liquid chromatography. In: Algal Culturing
Techniques (R. A. Andersen, Ed.), Academic Press, New York, pp. 327-345.
</pre>
from Cruise: DRFT08RR <pe>
dates: 10 January 2002 to 09 February 2002 (20020110-20020209)
location: N: -54.093 S: -66.602 W: -172.153 E: -169.304
project/cruise: SOFeX/RR
Methodology: HPLC pigment analysis methods described in:
Bidigare, R. R., L. Van Heukelem and C. C. Trees. 2005. Analysis of algal
pigments by high-performance liquid chromatography. In: Algal Culturing
Techniques (R. A. Andersen, Ed.), Academic Press, New York, pp. 327-345.
</pre>
Specified by the Principal Investigator(s)
<pre>
Change history: YYMMDD
061228: original data received from Susan Brown (UH Manoa);
070130: added to OCB database by Cyndy Chandler, OCB DMO, (cchandler@whoi.edu)
event, date, time and position data are from cruise event log
070328: modify data set after QC review by Susan Brown (UH Manoa)
see detailed list in DMO <a
href="http://ocb.whoi.edu/SOFeX/PI-NOTES/pigments_RR.html">processing notes file</a>
070503: data is now considered final following PI review
080213: added event_SFX from multi-ship event log
PI note:
all pigment concentrations reported in nanograms per liter
</pre>
from Cruise: PS02_2002 <pre>
Change history: YYMMDD
061228: original data received from Susan Brown (UH Manoa);
070130: added to OCB database by Cyndy Chandler, OCB DMO, (cchandler@whoi.edu)
070503: data is now considered final following PI review
OCB DMO Note: event, date, and time agree with event log data;
lat and lon position data are similar but not identical
PI note:
all pigment concentrations reported in nanograms per liter
</pre>
from Cruise: COOK19MV <pre>
Change history: YYMMDD
061228: original data received from Susan Brown (UH Manoa);
070130: added to OCB database by Cyndy Chandler, OCB DMO, (cchandler@whoi.edu)
070503: data is now considered final following PI review
OCB DMO Note: event, date, time, lon and lat agree with event log data
PI note:
all pigment concentrations reported in nanograms per liter
</pre>
from Cruise: DRFT08RR <pre>
Change history: YYMMDD
061228: original data received from Susan Brown (UH Manoa);
070130: added to OCB database by Cyndy Chandler, OCB DMO, (cchandler@whoi.edu)
event, date, time and position data are from cruise event log
070328: modify data set after QC review by Susan Brown (UH Manoa)
see detailed list in DMO <a
href="http://ocb.whoi.edu/SOFeX/PI-NOTES/pigments_RR.html">processing notes file</a>
070503: data is now considered final following PI review
080213: added event_SFX from multi-ship event log
PI note:
all pigment concentrations reported in nanograms per liter
</pre>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Niskin Bottle
Niskin Bottle
PI Supplied Instrument Name: Niskin Bottle Instrument Name: Niskin bottle Instrument Short Name:Niskin bottle Instrument Description: A Niskin bottle (a next generation water sampler based on the Nansen bottle) is a cylindrical, non-metallic water collection device with stoppers at both ends. The bottles can be attached individually on a hydrowire or deployed in 12, 24, or 36 bottle Rosette systems mounted on a frame and combined with a CTD. Niskin bottles are used to collect discrete water samples for a range of measurements including pigments, nutrients, plankton, etc. Community Standard Description: http://vocab.nerc.ac.uk/collection/L22/current/TOOL0412/
Cruise: PS02_2002
PS02_2002
Community Standard Description
NERC Vocabulary Server
USCGC Polar Star
vessel
PS02_2002
Kenneth O. Buesseler
Woods Hole Oceanographic Institution
http://ocb.whoi.edu/SOFeX/CRUISES/proj_description.pdf
Report describing PS02_2002
Cruise: COOK19MV
COOK19MV
R/V Melville
Community Standard Description
International Council for the Exploration of the Sea
R/V Melville
vessel
COOK19MV
Kenneth H. Coale
Moss Landing Marine Laboratories
http://ocb.whoi.edu/SOFeX/CRUISES/proj_description.pdf
Report describing COOK19MV
Cruise: DRFT08RR
DRFT08RR
R/V Roger Revelle
Community Standard Description
International Council for the Exploration of the Sea
R/V Roger Revelle
vessel
DRFT08RR
Kenneth S. Johnson
Monterey Bay Aquarium Research Institute
http://ocb.whoi.edu/SOFeX/CRUISES/proj_description.pdf
Report describing DRFT08RR
Community Standard Description
NERC Vocabulary Server
USCGC Polar Star
vessel
R/V Melville
Community Standard Description
International Council for the Exploration of the Sea
R/V Melville
vessel
R/V Roger Revelle
Community Standard Description
International Council for the Exploration of the Sea
R/V Roger Revelle
vessel