http://lod.bco-dmo.org/id/dataset/2912
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2010-06-16
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Mesozooplankton from R/V Kaiyo-Maru cruise KY0103-02 in the Northwestern Sub-Arctic Pacific in 2001 (SEEDS I project)
2008-08-28
publication
2008-08-28
revision
BCO-DMO Linked Data URI
2008-08-28
creation
http://lod.bco-dmo.org/id/dataset/2912
Atsushi Tsuda
University of Tokyo
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Tsuda, A. (2008) Mesozooplankton from R/V Kaiyo-Maru cruise KY0103-02 in the Northwestern Sub-Arctic Pacific in 2001 (SEEDS I project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 28August2008 ) Version Date 2008-08-28 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/2912 [access date]
Mesozooplankton Dataset Description: <p><b>SEEDS 2001 Mesozooplankton</b><br />
Abundance of zooplankters for most stations IN and OUT (all except day 13).<br />
Results are given as individuals per m2 by species and copepodite stage.</p> Methods and Sampling: <p>Samples were collected with VMPS (Vertical Multi-layer Plankton Sampler)<br />
with a 50x50cm mouth opening and 100um mesh<br />
Samples were collected between 0-20, 20-50, 50-100 and 100-200m.<br />
<br />
Samples were immediately fixed with 10% buffered formalin. <br />
Listed zooplankters were identified counted and sorted out from the sample.<br />
Species and copepodite stage are given</p>
completed
Atsushi Tsuda
University of Tokyo
+81-3-5351-6342
Plankton Laboratory, Ocean Research Institute, University of Tokyo: 1-15-1 Minamidai, Nakano-ku
Tokyo
164-8693
Japan
tsuda@ori.u-tokyo.ac.jp
pointOfContact
asNeeded
Dataset Version: 28August2008
Unknown
date
lat
lon
station
time_start
time_end
depth_top
depth_bottom
wet_weight_copepod
wet_weight_noncopepod
Neocalanus_cristatus_5
Neocalanus_cristatus_4
Neocalanus_cristatus_3
Neocalanus_cristatus_2
Neocalanus_cristatus_1
N_plumchrus_5
N_plumchrus_4
N_plumchrus_3
N_plumchrus_2
N_plumchrus_1
N_flemingeri_6f
N_flemingeri_6m
N_flemingeri_5
N_flemingeri_4
Eucalanus_bungii_6f
Eucalanus_bungii_6m
Eucalanus_bungii_5
Eucalanus_bungii_4
Eucalanus_bungii_3
Eucalanus_bungii_2
Eucalanus_bungii_1
Metridia_pacifica_6f
Pleuromamma_6f
Pleuromamma_6f
Euchaeta
Chaetgnaths
Themisto
Amphipods
Euphausia
Ostracoda
Ctenophora
Aglantha
Vertical Multi-layer Plankton Sampler
theme
None, User defined
date
latitude
longitude
station
time_start
time_end
No BCO-DMO term
weight
featureType
BCO-DMO Standard Parameters
Vertical Multi-layer Plankton Sampler
instrument
BCO-DMO Standard Instruments
KY0103-02
service
Deployment Activity
Northwestern Sub-Arctic Pacific
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Iron Synthesis
https://osprey.bco-dmo.org/program/2017
Iron Synthesis
The two main objectives of the Iron Synthesis program (SCOR Working Group proposal, 2005), are:
1. Data compilation: assembling a common open-access database of the in situ iron experiments, beginning with the first period (1993-2002; Ironex-1, Ironex-2, SOIREE, EisenEx, SEEDS-1; SOFeX, SERIES) where primary articles have already been published, to be followed by the 2004 experiments where primary articles are now in progress (EIFEX, SEEDS-2; SAGE, FeeP); similarly for the natural fertilizations S.O.JGOFS (1992), CROZEX (2004/2005) and KEOPS (2005).
2. Modeling and data synthesis of specific aspects of two or more such experiments for various topics such as physical mixing, phytoplankton productivity, overall ecosystem functioning, iron chemistry, CO2 budgeting, nutrient uptake ratios, DMS(P) processes, and combinations of these variables and processes.
SCOR Working Group proposal, 2005. "The Legacy of in situ Iron Enrichments: Data Compilation and Modeling".
http://www.scor-int.org/Working_Groups/wg131.htm
See also: SCOR Proceedings Vol. 42 Concepcion, Chile October 2006, pgs: 13-16 2.3.3 Working Group on The Legacy of in situ Iron Enrichments: Data Compilation and Modeling.
The first objective of the Iron Synthesis program involves a data recovery effort aimed at assembling a common, open-access database of data and metadata from a series of in-situ ocean iron fertilization experiments conducted between 1993 and 2005. Initially, funding for this effort is being provided by the Scientific Committee on Oceanic Research (SCOR) and the U.S. National Science Foundation (NSF).
Through the combined efforts of the principal investigators of the individual projects and the staff of Biological and Chemical Oceanography Data Management Office (BCO-DMO), data currently available primarily through individuals, disparate reports and data agencies, and in multiple formats, are being collected and prepared for addition to the BCO-DMO database from which they will be freely available to the community.
As data are contributed to the BCO-DMO office, they are organized into four overlapping categories:
1. Level 1, basic metadata
(e.g., description of project/study, general location, PI(s), participants);
2. Level 2, detailed metadata and basic shipboard data and routine ship's operations
(e.g., CTDs, underway measurements, sampling event logs);
3. Level 3, detailed metadata and data from specialized observations
(e.g., discrete observations, experimental results, rate measurements) and
4. Level 4, remaining datasets
(e.g., highest level of detailed data available from each study).
Collaboration with BCO-DMO staff began in March of 2008 and initial efforts have been directed toward basic project descriptions, levels 1 and 2 metadata and basic data, with detailed and more detailed data files being incorporated as they become available and are processed.
Related file
Program Documentation
The Iron Synthesis Program is funded jointly by the Scientific Committee on Oceanic Research (SCOR) and the U.S. National Science Foundation (NSF).
FeSynth
largerWorkCitation
program
Subarctic-Pacific Iron Experiment for Ecosystem Dynamics Study I
http://www.seeds-exp.jp/en/index.html
Subarctic-Pacific Iron Experiment for Ecosystem Dynamics Study I
<p>An in situ test of the iron limitation hypothesis in the subarctic North Pacific Oceanwas performed. First experiment of two (see SEEDS 2004)</p>
<p>A single enrichment of dissolved iron caused a large increase in phytoplanktonstanding stock and decreases in macronutrients and dissolved carbon dioxide. The dominant phytoplankton species shifted after the iron addition from pennate diatoms to a centric diatom, <i>Chaetoceros debilis</i>, that showed a very high growth rate, 2.6 doublings per day. Conclusion was that the bioavailability of iron regulates the magnitude of the phytoplankton biomass and the key phytoplankton species that determine the biogeochemical sensitivity to iron supply of high-nitrate, low-chlorophyll waters.</p>
<p>Data was collected at a total of 13 stations and from 3 moored sediment traps.<br />
- Stations were occupied IN patch for days 0, 2, 4, 7, 9, 11 and 13.<br />
- Stations were occupied OUT patch for days 2, 4, 7, 9, 11, 13.</p>
<p>It is not explicitly stated but it appears that at all stations two CTDsampling rosette casts were made: clean and rms. The clean rosette appears to have typically sampled the mixed layer (<50 m) e.g. 5, 10, 20, 30, 50 m. The rms rosette appears to have typically sampled the euphotic zone (<200m) e.g. 10, 20, 30, 40, 50, 80, 100, 150, 200 m.</p>
<p>Sediment traps were deployed at:<br />
- CENTRE: 20 m<br />
- IN: 40, 60, 100, 200 m<br />
- OUT: 20, 40, 60 and 100 m</p>
<p>Traps were recovered several times. Deployment times (days):<br />
- CENTRE: 3.95, 2.83, 2.02, 1.98, 1.93, 2.05<br />
- IN: 3.99, 2.84, 2.03, 2.00, 1.95, 2.01<br />
- OUT: 5.17, 3.97, 3.42</p>
<p><b>BCO-DMO/Doug Mackie Note:</b><br />
Throughout these data, stations are identified as D2-I, D2-O, etc.<br />
D2-I indicates "Day 2, in patch station".<br />
while D2-O indicates "Day 2, out patch station".<br />
This applies to all station identifiers.</p>
<h3>Related file</h3>
<p><a href="http://data.bco-dmo.org/Fe_Synthesis/SEEDS_2001/Project_SEEDS-ONE_Master.pdf">SEEDS 2001 Project Documentation</a></p>
<p> </p>
<p> </p>
SEEDS I
largerWorkCitation
project
eng; USA
oceans
Northwestern Sub-Arctic Pacific
2008-08-28
Western subarctic gyre in the North Pacific at 48.5°N, 165°E
0
BCO-DMO catalogue of parameters from Mesozooplankton from R/V Kaiyo-Maru cruise KY0103-02 in the Northwestern Sub-Arctic Pacific in 2001 (SEEDS I project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/17855.rdf
Name: date
Units: YYYYMMDD
Description: <p>Date UTC</p>
http://lod.bco-dmo.org/id/dataset-parameter/17856.rdf
Name: lat
Units: decimal degrees
Description: <p>latitude, negative denotes South</p>
http://lod.bco-dmo.org/id/dataset-parameter/17857.rdf
Name: lon
Units: decimal degrees
Description: <p>longitude, negative denotes West</p>
http://lod.bco-dmo.org/id/dataset-parameter/17858.rdf
Name: station
Units: text
Description: <p>Station Id</p>
http://lod.bco-dmo.org/id/dataset-parameter/17859.rdf
Name: time_start
Units: HHMM
Description: <p>Start time of station</p>
http://lod.bco-dmo.org/id/dataset-parameter/17860.rdf
Name: time_end
Units: HHMM
Description: <p>End time of station</p>
http://lod.bco-dmo.org/id/dataset-parameter/17861.rdf
Name: depth_top
Units: meters
Description: <p>Top sampling depth</p>
http://lod.bco-dmo.org/id/dataset-parameter/17862.rdf
Name: depth_bottom
Units: meters
Description: <p>Bottom depth of sample</p>
http://lod.bco-dmo.org/id/dataset-parameter/17863.rdf
Name: wet_weight_copepod
Units: g/m2
Description: <p>Wet weight copepod</p>
http://lod.bco-dmo.org/id/dataset-parameter/17864.rdf
Name: wet_weight_noncopepod
Units: g/m2
Description: <p>Wet weight noncopepod</p>
http://lod.bco-dmo.org/id/dataset-parameter/17865.rdf
Name: Neocalanus_cristatus_5
Units: count
Description: <p>Count of Neocalanus_cristatus_5</p>
http://lod.bco-dmo.org/id/dataset-parameter/17866.rdf
Name: Neocalanus_cristatus_4
Units: count
Description: <p>Count of Neocalanus_cristatus_4</p>
http://lod.bco-dmo.org/id/dataset-parameter/17867.rdf
Name: Neocalanus_cristatus_3
Units: count
Description: <p>Count of Neocalanus_cristatus_3</p>
http://lod.bco-dmo.org/id/dataset-parameter/17868.rdf
Name: Neocalanus_cristatus_2
Units: count
Description: <p>Count of Neocalanus_cristatus_2</p>
http://lod.bco-dmo.org/id/dataset-parameter/17869.rdf
Name: Neocalanus_cristatus_1
Units: count
Description: <p>Count of Neocalanus_cristatus_1</p>
http://lod.bco-dmo.org/id/dataset-parameter/17870.rdf
Name: N_plumchrus_5
Units: count
Description: <p>Count of N_plumchrus_5</p>
http://lod.bco-dmo.org/id/dataset-parameter/17871.rdf
Name: N_plumchrus_4
Units: count
Description: <p>Count of N_plumchrus_4</p>
http://lod.bco-dmo.org/id/dataset-parameter/17872.rdf
Name: N_plumchrus_3
Units: count
Description: <p>Count of N_plumchrus_3</p>
http://lod.bco-dmo.org/id/dataset-parameter/17873.rdf
Name: N_plumchrus_2
Units: count
Description: <p>Count of N_plumchrus_2</p>
http://lod.bco-dmo.org/id/dataset-parameter/17874.rdf
Name: N_plumchrus_1
Units: count
Description: <p>Count of N_plumchrus_1</p>
http://lod.bco-dmo.org/id/dataset-parameter/17875.rdf
Name: N_flemingeri_6f
Units: count
Description: <p>Count of N_flemingeri_6f</p>
http://lod.bco-dmo.org/id/dataset-parameter/17876.rdf
Name: N_flemingeri_6m
Units: count
Description: <p>Count of N_flemingeri_6m</p>
http://lod.bco-dmo.org/id/dataset-parameter/17877.rdf
Name: N_flemingeri_5
Units: count
Description: <p>Count of N_flemingeri_5</p>
http://lod.bco-dmo.org/id/dataset-parameter/17878.rdf
Name: N_flemingeri_4
Units: count
Description: <p>Count of N_flemingeri_4</p>
http://lod.bco-dmo.org/id/dataset-parameter/17879.rdf
Name: Eucalanus_bungii_6f
Units: count
Description: <p>Count of Eucalanus_bungii_6f</p>
http://lod.bco-dmo.org/id/dataset-parameter/17880.rdf
Name: Eucalanus_bungii_6m
Units: count
Description: <p>Count of Eucalanus_bungii_6m</p>
http://lod.bco-dmo.org/id/dataset-parameter/17881.rdf
Name: Eucalanus_bungii_5
Units: count
Description: <p>Count of Eucalanus_bungii_5</p>
http://lod.bco-dmo.org/id/dataset-parameter/17882.rdf
Name: Eucalanus_bungii_4
Units: count
Description: <p>Count of Eucalanus_bungii_4</p>
http://lod.bco-dmo.org/id/dataset-parameter/17883.rdf
Name: Eucalanus_bungii_3
Units: count
Description: <p>Count of Eucalanus_bungii_3</p>
http://lod.bco-dmo.org/id/dataset-parameter/17884.rdf
Name: Eucalanus_bungii_2
Units: count
Description: <p>Count of Eucalanus_bungii_2</p>
http://lod.bco-dmo.org/id/dataset-parameter/17885.rdf
Name: Eucalanus_bungii_1
Units: count
Description: <p>Count of Eucalanus_bungii_1</p>
http://lod.bco-dmo.org/id/dataset-parameter/17886.rdf
Name: Metridia_pacifica_6f
Units: count
Description: <p>Count of Metridia_pacifica_6f</p>
http://lod.bco-dmo.org/id/dataset-parameter/17887.rdf
Name: Pleuromamma_6f
Units: count
Description: <p>Count of Pleuromamma_6f</p>
http://lod.bco-dmo.org/id/dataset-parameter/17888.rdf
Name: Pleuromamma_6f
Units: count
Description: <p>Count of Pleuromamma_6f</p>
http://lod.bco-dmo.org/id/dataset-parameter/17889.rdf
Name: Euchaeta
Units: count
Description: <p>Count of Euchaeta</p>
http://lod.bco-dmo.org/id/dataset-parameter/17890.rdf
Name: Chaetgnaths
Units: count
Description: <p>Count of Chaetgnaths</p>
http://lod.bco-dmo.org/id/dataset-parameter/17891.rdf
Name: Themisto
Units: count
Description: <p>Count of Themisto</p>
http://lod.bco-dmo.org/id/dataset-parameter/17892.rdf
Name: Amphipods
Units: count
Description: <p>Count of Amphipods</p>
http://lod.bco-dmo.org/id/dataset-parameter/17893.rdf
Name: Euphausia
Units: count
Description: <p>Count of Euphausia</p>
http://lod.bco-dmo.org/id/dataset-parameter/17894.rdf
Name: Ostracoda
Units: count
Description: <p>Count of Ostracoda</p>
http://lod.bco-dmo.org/id/dataset-parameter/17895.rdf
Name: Ctenophora
Units: count
Description: <p>Count of Ctenophora</p>
http://lod.bco-dmo.org/id/dataset-parameter/17896.rdf
Name: Aglantha
Units: count
Description: <p>Count of Aglantha</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
13947
https://datadocs.bco-dmo.org/file/3YY3q8Os7W2oYo/mesozoo.csv
mesozoo.csv
Primary data file for dataset ID 2912
download
https://osprey.bco-dmo.org/dataset/2912/data/download
download
onLine
dataset
<p>Samples were collected with VMPS (Vertical Multi-layer Plankton Sampler)<br />
with a 50x50cm mouth opening and 100um mesh<br />
Samples were collected between 0-20, 20-50, 50-100 and 100-200m.<br />
<br />
Samples were immediately fixed with 10% buffered formalin. <br />
Listed zooplankters were identified counted and sorted out from the sample.<br />
Species and copepodite stage are given</p>
Specified by the Principal Investigator(s)
<p><b>BCO-DMO Processing Notes</b><br />
CSV file generated by Doug Mackie from original spreadsheet Mesozooplankton.xls<br />
<br />
<i><b>Notes from CSV file generated by Doug Mackie:</b><br />
Species and copepodite stage are given <br />
Wet weight of the sorted samples were measured for copepods and non-copepod organisms <br />
<br />
Detailed descriptions of the method are presented by Tsuda et al. (2005) in the special volume of Progress in Oceanography <br />
Tsuda A. Saito H. Nishioka J. &amp; Ono T. (2005): Mesozooplankton responses to iron-fertilization in the western subarctic Pacific (SEEDS2001). Progress In Oceanography 64(2-4) 237-251 <br />
<br />
Data of D13 were considered to be not quantitative because of rough weather. <br />
0 value is as reported in original file <br />
nd value means no sample or dash reported in original file <br />
<br />
</i> <b>BCO-DMO Edits</b><br />
- Parameter names modified to conform to BCO-DMO convention</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Vertical Multi-layer Plankton Sampler
Vertical Multi-layer Plankton Sampler
PI Supplied Instrument Name: Vertical Multi-layer Plankton Sampler Instrument Name: Vertical Multi-layer Plankton Sampler Instrument Short Name:VMPS Instrument Description: The Vertical Multiple Plankton Sampler (VMPS), a variation of the multiple plankton sampler (MPS), is a specially designed opening-closing, multi-layer net system used for collecting zooplankton (Terazaki and Tomatsu, 1997). The mesh size and mouth opening can vary depending on research focus. The VMPS is towed through depth ranges with nets closed at known intervals to yield estimations of standing stock, vertical distribution and diel vertical migration.
The VMPS as described by Wiebe and Benfield (2003) is named the Ocean Research Institute Vertical Multiple Plankton Sampler (ORI-VMPS) with specifications: 100 cm x 100 cm rectangular mouth opening multiple net system that can be equipped with 4 to 10 nets, 510 cm long with 0.33 mm nylon mesh. Nets are opened/closed by surface commands down
transmitted via conduction cable to an underwater
unit (see Plate 31 C (Wiebe and Benfield, 2003)).
References:
Terazaki, M. and Tomatsu, C. (1997). A vertical multiple opening and closing plankton sampler. Journal of Advanced Marine Science Technological Society, 3, 127-132.
Wiebe, Peter H. and Mark C. Benfield, 2003. From the Hensen net toward four-dimensional biological
oceanography. Progress in Oceanography, 56, pp. 118. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/22/
Cruise: KY0103-02
KY0103-02
Community Standard Description
International Council for the Exploration of the Sea
R/V Kaiyo-Maru
vessel
KY0103-02
Atsushi Tsuda
Ocean Research Institute - University of Tokyo
Community Standard Description
International Council for the Exploration of the Sea
R/V Kaiyo-Maru
vessel