http://lod.bco-dmo.org/id/dataset/3040
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2009-03-22
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Pigments, chlorophyll-a and phaeophytin sampled from Niskin bottles from R/V Oceanus OC404-01, OC404-04 in the Sargasso Sea in 2004 (EDDIES project)
2007-06-20
publication
2007-06-20
revision
National Oceanographic Data Center (NODC)
2011-10-06
publication
http://accession.nodc.noaa.gov/0078142
Nicholas R. Bates
Bermuda Biological Station for Research
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Bates, N. R. (2007) Pigments, chlorophyll-a and phaeophytin sampled from Niskin bottles from R/V Oceanus OC404-01, OC404-04 in the Sargasso Sea in 2004 (EDDIES project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 20 June 2007) Version Date 2007-06-20 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/3040 [access date]
pigments chlorophyll-a and phaeophytin sampled from Niskin bottles Dataset Description: <pre>
<b>PI:</b> Nick Bates
<b>of:</b> Bermuda Biological Station for Research (BBSR)
<b>dataset:</b> pigments chlorophyll-a and phaeophytin sampled from Niskin bottles
<b>platform:</b> R/V Oceanus
Methodology: see Chapter 14: Determination of Chlorophyll &amp; Phaeopigments in
U.S. JGOFS BATS Method Manual Version 4 (1997). Bermuda Atlantic Time-Series
Study April 1997. Anthony H. Knap, Anthony F. Michaels et al., 136 pp.
(link to <a href="http://ocb.whoi.edu/EDDIES/PI-NOTES/BATS_methods_TOC.html">BATS Method Manual version 4</a> local copy)
Technician: Rod Johnson (rod@sargasso.bbsr.edu)
</pre> Methods and Sampling:
completed
Nicholas R. Bates
Bermuda Biological Station for Research
1-441-297-1880
17 Biological Lane GE 01
St. Georges
Bermuda
nick.bates@bios.edu
pointOfContact
asNeeded
Dataset Version: 20 June 2007
Unknown
sta
event
date
time
lon
lat
depth_n
SID_chla
chl_a_fluor_ugL
phaeo
F0
Fa
Fo_blank
Fa_blank
Niskin bottle
theme
None, User defined
station number
event
date
time of day
longitude
latitude
depth nominal
sample identification
chlorophyll-a; fluorometric method
total phaeopigment
No BCO-DMO term
featureType
BCO-DMO Standard Parameters
Niskin bottle
instrument
BCO-DMO Standard Instruments
OC404-01
OC404-04
service
Deployment Activity
Sargasso Sea
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Ocean Carbon and Biogeochemistry
http://us-ocb.org/
Ocean Carbon and Biogeochemistry
The Ocean Carbon and Biogeochemistry (OCB) program focuses on the ocean's role as a component of the global Earth system, bringing together research in geochemistry, ocean physics, and ecology that inform on and advance our understanding of ocean biogeochemistry. The overall program goals are to promote, plan, and coordinate collaborative, multidisciplinary research opportunities within the U.S. research community and with international partners. Important OCB-related activities currently include: the Ocean Carbon and Climate Change (OCCC) and the North American Carbon Program (NACP); U.S. contributions to IMBER, SOLAS, CARBOOCEAN; and numerous U.S. single-investigator and medium-size research projects funded by U.S. federal agencies including NASA, NOAA, and NSF.
The scientific mission of OCB is to study the evolving role of the ocean in the global carbon cycle, in the face of environmental variability and change through studies of marine biogeochemical cycles and associated ecosystems.
The overarching OCB science themes include improved understanding and prediction of: 1) oceanic uptake and release of atmospheric CO2 and other greenhouse gases and 2) environmental sensitivities of biogeochemical cycles, marine ecosystems, and interactions between the two.
The OCB Research Priorities (updated January 2012) include: ocean acidification; terrestrial/coastal carbon fluxes and exchanges; climate sensitivities of and change in ecosystem structure and associated impacts on biogeochemical cycles; mesopelagic ecological and biogeochemical interactions; benthic-pelagic feedbacks on biogeochemical cycles; ocean carbon uptake and storage; and expanding low-oxygen conditions in the coastal and open oceans.
OCB
largerWorkCitation
program
Eddies Dynamics, Mixing, Export, and Species composition
http://science.whoi.edu/users/olga/eddies/EDDIES_Project.html
Eddies Dynamics, Mixing, Export, and Species composition
<p>The original title of this project from the NSF award is: Collaborative Research: Impacts of Eddies and Mixing on Plankton Community Structure and Biogeochemical Cycling in the Sargasso Sea".</p>
<p>Prior results have documented eddy-driven transport of nutrients into the euphotic zone and the associated accumulation of chlorophyll. However, several key aspects of mesoscale upwelling events remain unresolved by the extant database, including: (1) phytoplankton physiological response, (2) changes in community structure, (3) impact on export out of the euphotic zone, (4) rates of mixing between the surface mixed layer and the base of the euphotic zone, and (5) implications for biogeochemistry and differential cycling of carbon and associated bioactive elements. This leads to the following hypotheses concerning the complex, non-linear biological regulation of elemental cycling in the ocean:</p>
<p>H1: Eddy-induced upwelling, in combination with diapycnal mixing in the upper ocean, introduces new nutrients into the euphotic zone.</p>
<p>H2: The increase in inorganic nutrients stimulates a physiological response within the phytoplankton community.</p>
<p>H3: Differing physiological responses of the various species bring about a shift in community structure.</p>
<p>H4: Changes in community structure lead to increases in export from, and changes in biogeochemical cycling within, the upper ocean.</p>
<h4>Publications</h4>
<p>Andrews, J.E., Hartin, C., and Buesseler, K.O.. "7Be Analyses in Seawater by Low Background Gamma-Spectroscopy.," Journal of Radioanalytical and Nuclear Chemistry, v.277, 2008, p. 253.</p>
<p>Andrews, J.E., Hartin, C., Buesseler, K.O.. "7Be Analyses in Seawater by Low Background Gamma-Spectroscopy," Journal of Radioanalytical and Nuclear Chemistry, v.277, 2008, p. 253.</p>
<p>Benitez-Nelson, C.R. and McGillicuddy, D.J.. "Mesoscale Physical-Biological-Biogeochemical Linkages in the Open Ocean: An Introduction to the Results of the E-Flux and EDDIES Programs.," Deep Sea Research II, v.55, 2008, p. 1133.</p>
<p>Benitez-Nelson, C.R. and McGillicuddy, D.J.. "Mesoscale Physical-Biological-Biogeochemical Linkages in the Open Ocean: An Introduction to the Results of the E-Flux and EDDIES Programs," Deep-Sea Research II, v.55, 2008, p. 1133.</p>
<p>Bibby, T.S., Gorbunov, M.Y., Wyman, K.W., Falkowski, P.G.. "Photosynthetic community responses to upwelling in mesoscale eddies in the subtropical North Atlantic and Pacific Oceans," Deep-Sea Research Part II: Topical Studies in Oceanography, v.55, 2008, p. 1310.</p>
<p>Buesseler, K.O., Lamborg, C., Cai, P., Escoube, R., Johnson, R., Pike, S., Masque, P., McGillicuddy, D.J., Verdeny, E.. "Particle Fluxes Associated with Mesoscale Eddies in the Sargasso Sea," Deep Sea Research II, v.55, 2008, p. 1426.</p>
<p>Carlson, C.A., del Giorgio, P., Herdl, G.. "Microbes and the dissipation of energy and respiration: From cells to ecosystems," Oceanography, v.20, 2007, p. 89.</p>
<p>Davis, C.S., and McGillicuddy, D.J.. "Transatlantic Abundance of the N2-Fixing Colonial Cyanobacterium Trichodesmium," Science, v.312, 2006, p. 1517.</p>
<p>Ewart, C.S., Meyers, M.K., Wallner, E., McGillicuddy, D.J., Carlson, C.A.. "Microbial Dynamics in Cyclonic and Anticyclonic Mode-Water Eddies in the Northwestern Sargasso Sea," Deep Sea Research II, v.55, 2008, p. 1334.</p>
<p>Ewart, C.S., Meyers, M.K., Wallner, E., McGillicuddy, D.J., Carlson, C.A.. "Microbial Dynamics in Cyclonic and Anticyclonic Mode-Water Eddies in the Northwestern Sargasso Sea," Deep-Sea Research II, v.55, 2008, p. 1334.</p>
<p>Goldthwait, S.A. and Steinberg, D.K.. "Elevated biomass of mesozooplankton and enhanced fecal pellet flux in cyclonic and mode-water eddies in the Sargasso Sea," Deep-Sea Research Part II: Topical Studies in Oceanography, v.55, 2008, p. 1360.</p>
<p>Greenan, B.J.W.. "Shear and Richardson number in a mode-water eddy," Deep-Sea Research Part II: Topical Studies in Oceanography, v.55, 2008, p. 1161.</p>
<p>Jenkins, W.J., McGillicuddy, D.J., and Lott III, D.E.. "The Distributions of, and Relationship Between 3 He and Nitrate in Eddies," Deep Sea Research II, v.55, 2008, p. 1389.</p>
<p>Jenkins, W.J., McGillicuddy, D.J., Lott III, D.E.. "The Distributions of, and Relationship Between 3 He and Nitrate in Eddies," Deep-Sea Research II, v.55, 2008, p. 1389.</p>
<p>Ledwell, J.R., McGillicuddy, D.J., and Anderson, L.A.. "Nutrient Flux into an Intense Deep Chlorophyll Layer in a Mode-water Eddy.," Deep Sea Research II, v.55, 2008, p. 1139.</p>
<p>Ledwell, J.R., McGillicuddy, D.J., Anderson, L.A.. "Nutrient Flux into an Intense Deep Chlorophyll Layer in a Mode-water Eddy," Deep-Sea Research II, v.55, 2008, p. 1139.</p>
<p>Li, Q.P. and Hansell, D.A.. "Intercomparison and coupling of MAGIC and LWCC techniques for trace analysis of phosphate in seawater," Analytical Chemica Acta, v.611, 2008, p. 68.</p>
<p>Li, Q.P., Hansell, D.A., McGillicuddy, D.J., Bates, N.R., Johnson, R.J.. "Tracer-based assessment of the origin and biogeochemical transformation of a cyclonic eddy in the Sargasso Sea," Journal of Geophysical Research, v.113, 2008, p. 10006.</p>
<p>Li, Q.P., Hansell, D.A., Zhang, J.-Z.. "Underway monitoring of nanomolar nitrate plus nitrite and phosphate in oligotrophic seawater," Limnology and Oceanography: Methods, v.6, 2008, p. 319.</p>
<p>Li, Q.P., Zhang, J.-Z., Millero, F.J., Hansell, D.A.. "Continuous colorimetric determination of trace ammonium in seawater with a long-path liquid waveguide capillary cell," Marine Chemistry, v.96, 2005, p. 73.</p>
<p>McGillicuddy, D.J., et. al.. "Eddy/Wind Interactions Stimulate Extraordinary Mid-Ocean Plankton Blooms," Science, v.316, 2007, p. 1021.</p>
<p>McGillicuddy, D.J., Ledwell, J.R., and Anderson, L.A.. "Response to Comment on "Eddy/Wind Interactions Stimulate Extraordinary Mid-Ocean Plankton Bloom".," Science, v.320, 2008.</p>
<p>McGillicuddy, D.J., Ledwell, J.R., Anderson, L.A.. "Response to Comment on "Eddy/Wind Interactions Stimulate Extraordinary Mid-Ocean Plankton Bloom"," Science, v.320, 2008.</p>
<p>McGillicuddy, et. al.. "Eddy/Wind Interactions Stimulate Extraordinary Mid-Ocean Plankton Blooms.," Science, v.316, 2007, p. 1021.</p>
<p>Mourino B., and McGillicuddy, D.J.. "Mesoscale Variability in the Metabolic Balance of the Sargasso Sea," Limnology & Oceanography, v.51, 2006, p. 2675.</p>
EDDIES
largerWorkCitation
project
eng; USA
oceans
Sargasso Sea
2007-06-20
Sargasso Sea
0
BCO-DMO catalogue of parameters from Pigments, chlorophyll-a and phaeophytin sampled from Niskin bottles from R/V Oceanus OC404-01, OC404-04 in the Sargasso Sea in 2004 (EDDIES project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/16345.rdf
Name: sta
Units: dimensionless
Description: <p>station number</p>
http://lod.bco-dmo.org/id/dataset-parameter/16346.rdf
Name: event
Units: YYYYMMDDhhmm
Description: <p>unique sampling event number composite of GMT date and time</p>
http://lod.bco-dmo.org/id/dataset-parameter/16347.rdf
Name: date
Units: YYMMDD
Description: <p>sampling date (GMT)</p>
http://lod.bco-dmo.org/id/dataset-parameter/16348.rdf
Name: time
Units: HHMM
Description: <p>sampling time (GMT)</p>
http://lod.bco-dmo.org/id/dataset-parameter/16349.rdf
Name: lon
Units: decimal degrees
Description: <p>longitude, negative denotes West</p>
http://lod.bco-dmo.org/id/dataset-parameter/16350.rdf
Name: lat
Units: decimal degrees
Description: <p>latitude, negative denotes South</p>
http://lod.bco-dmo.org/id/dataset-parameter/16351.rdf
Name: depth_n
Units: meters
Description: <p>sample depth, nominal</p>
http://lod.bco-dmo.org/id/dataset-parameter/16352.rdf
Name: SID_chla
Units: dimensionless
Description: <p>sample ID, chlorophyll-a</p>
http://lod.bco-dmo.org/id/dataset-parameter/16353.rdf
Name: chl_a_fluor_ugL
Units: micrograms/liter
Description: <p>chlorophyll-a</p>
http://lod.bco-dmo.org/id/dataset-parameter/16354.rdf
Name: phaeo
Units: micrograms/liter
Description: <p>phaeophytin</p>
http://lod.bco-dmo.org/id/dataset-parameter/16355.rdf
Name: F0
Units: relative
Description: <p>initial fluorescence</p>
http://lod.bco-dmo.org/id/dataset-parameter/16356.rdf
Name: Fa
Units: relative
Description: <p>fluorescence after acidification</p>
http://lod.bco-dmo.org/id/dataset-parameter/16357.rdf
Name: Fo_blank
Units: relative
Description: <p>initial fluorescence minus fluorescence of a blank</p>
http://lod.bco-dmo.org/id/dataset-parameter/16358.rdf
Name: Fa_blank
Units: relative
Description: <p>fluorescence after acidification minus fluorescence of a blank </p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
58254
https://datadocs.bco-dmo.org/file/g7ErBm6TGQ7JZ7/chlorophyll_OC404-01.csv
chlorophyll_OC404-01.csv
version 20 June 2007
PI: Nick Bates (BBSR)
pigments chlorophyll-a and phaeophytin sampled from Niskin bottles
OC404-1 EDDIES 2004 Survey 1 cruise
download
54871
https://datadocs.bco-dmo.org/file/ZZn3l7pTPENQkD/chlorophyll_OC404-04.csv
chlorophyll_OC404-04.csv
version 24 May 2007
(previous version 13 March 2007)
PI: Nick Bates (BBSR)
pigments chlorophyll-a and phaeophytin sampled from Niskin bottles
OC404-4 EDDIES 2004 Survey 2 cruise
download
https://osprey.bco-dmo.org/dataset/3040/data/download
download
onLine
dataset
from Cruise: OC404-01 <pre>
<b>PI:</b> Nick Bates
<b>of:</b> Bermuda Biological Station for Research (BBSR)
<b>dataset:</b> pigments chlorophyll-a and phaeophytin sampled from Niskin bottles
<b>dates:</b> 12 June 2004 to 02 July 2004 (20040612-20040702)
<b>location:</b> N: 37.934 S: 29.777 W: -68.703 E: -58.754
<b>project/cruise:</b> EDDIES/OC404-1 2004 Survey 1
<b>platform:</b> R/V Oceanus
Methodology: see Chapter 14: Determination of Chlorophyll & Phaeopigments in
U.S. JGOFS BATS Method Manual Version 4 (1997). Bermuda Atlantic Time-Series
Study April 1997. Anthony H. Knap, Anthony F. Michaels et al., 136 pp.
(link to <a href="http://ocb.whoi.edu/EDDIES/PI-NOTES/BATS_methods_TOC.html">BATS Method Manual version 4</a> local copy)
Technician: Rod Johnson (rod@sargasso.bbsr.edu)
Change history: YYMMDD
050610: original data contributed by Rod Johnson (rod@sargasso.bbsr.edu);
added to OCB database by Cyndy Chandler, OCB DMO
070313: change parameter names to be consistent within EDDIES
070620: add event, date, time, lon and lat from cruise event log (Copley, OCB)
</pre>
from Cruise: OC404-04 <pre>
<b>PI:</b> Nick Bates
<b>of:</b> Bermuda Biological Station for Research (BBSR)
<b>dataset:</b> chlorophyll-a and phaeophytin pigments sampled from Niskin bottles
<b>dates:</b> 26 July 2004 to 11 August 2004 (20040726-20040811)
<b>location:</b> N: 31.942 S: 29.958 W: -66.603 E: -59.450
<b>project/cruise:</b> EDDIES/OC404-4 2004 survey 2
<b>platform:</b> R/V Oceanus
Methodology: see Chapter 14: Determination of Chlorophyll & Phaeopigments in
U.S. JGOFS BATS Method Manual Version 4 (1997). Bermuda Atlantic Time-Series
Study April 1997. Anthony H. Knap, Anthony F. Michaels et al., 136 pp.
(link to <a href="http://ocb.whoi.edu/EDDIES/PI-NOTES/BATS_methods_TOC.html">BATS Method Manual version 4</a> local copy)
Technician: Rod Johnson (rod@sargasso.bbsr.edu)
Change history: YYMMDD
061213: downloaded original data from EDDIES data web site;
070112: added to OCB database by Nancy Copley and Cyndy Chandler, OCB DMO
070313: change parameter names to be consistent within EDDIES
070524: added data for stations 49-68; event, date and position are from log
DMO note: The local SID_chla data match data reported in the bottle_SID object
</pre>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Niskin bottle
Niskin bottle
PI Supplied Instrument Name: Niskin bottle Instrument Name: Niskin bottle Instrument Short Name:Niskin bottle Instrument Description: A Niskin bottle (a next generation water sampler based on the Nansen bottle) is a cylindrical, non-metallic water collection device with stoppers at both ends. The bottles can be attached individually on a hydrowire or deployed in 12, 24, or 36 bottle Rosette systems mounted on a frame and combined with a CTD. Niskin bottles are used to collect discrete water samples for a range of measurements including pigments, nutrients, plankton, etc. Community Standard Description: http://vocab.nerc.ac.uk/collection/L22/current/TOOL0412/
Cruise: OC404-01
OC404-01
R/V Oceanus
Community Standard Description
International Council for the Exploration of the Sea
R/V Oceanus
vessel
OC404-01
Dennis J. McGillicuddy
Woods Hole Oceanographic Institution
http://ocb.whoi.edu/EDDIES/CRUISES/2004/OC404-1_Draft_Cruise_Report.pdf
Report describing OC404-01
Cruise: OC404-04
OC404-04
R/V Oceanus
Community Standard Description
International Council for the Exploration of the Sea
R/V Oceanus
vessel
OC404-04
Dennis J. McGillicuddy
Woods Hole Oceanographic Institution
http://ocb.whoi.edu/EDDIES/CRUISES/2004/OC404-4_Draft_Cruise_Report.pdf
Report describing OC404-04
R/V Oceanus
Community Standard Description
International Council for the Exploration of the Sea
R/V Oceanus
vessel