Underway data from multiple cruises in the Gulf of Maine, Cape Cod Bay, Bay of Fundy, Georges Bank, and Sargasso Sea from 2004-2010 (ALEX-GoME project)

Website: https://www.bco-dmo.org/dataset/3359
Version: 19 July 2011
Version Date: 2011-07-19

Project
» Investigations of Alexandrium fundyense dynamics in the Gulf of Maine (ALEX-GoME)
ContributorsAffiliationRole
McGillicuddy, Dennis J.Woods Hole Oceanographic Institution (WHOI)Principal Investigator, Contact
Kosnyrev, OlgaWoods Hole Oceanographic Institution (WHOI)Co-Principal Investigator, Contact, Data Manager
Gegg, Stephen R.Woods Hole Oceanographic Institution (WHOI BCO-DMO)BCO-DMO Data Manager


Dataset Description

BCO-DMO Note: Although the status of these data has been set to Final and Validated, they have not been QC'ed    27March2013

Multi year underway data 2003-2010
These data include version 2 data as submitted.

Version 2 NOTES: Version 2 means that Data set has been updated in part of the new data added: (1) 2010 cruises; (2) Previously unavailable Whole cell counts from the previous cruises; and (3) Previously unavailable data for Underway stations (mostly date, location).

Data files newly created or updated in this version are indicated with "_v2" in file names.
(BCO-DMO Note: for original files as contributed)

Date of creation: 5/12/2011.
Matlab code used for data merging: GM_read_alex_nuts_BTL_v2.m

Sometimes all the data in the Underway file is unavailable at the time but is known to be sampled.
In this case the file is still presented but empty (headers only).

No data reported for the following cruises:
 - 2003/OC391
 - 2005/OC412
 - 2005/TI096
 - 2005/TI105
 - 2005/TI112
 - 2006/TI171
 - 2006/TI177
 - 2006/TI180
 - 2006/TI184
 - 2006/TI185
 - 2008/TI326
 - 2010/EN476
 - 2010/OC460
 - 2010/OC467

Data not sampled or lost are indicated with NaN.
Data not yet available, but that might be contributed in the future are indicated with the "waiting" flag=-9.99.

Funding:
The cruises from 2003-2004 were supported by NOAA grant NA160P2785 (MERHAB).
The cruises from 2005-2010 were jointly funded:
NSF grant OCE-0430724 and NIEHS grant 1P50-ES01274201 (Woods Hole Center for Oceans and Human Health)
NOAA grant NA06NOS4780245 (GOMTOX)


Data Processing Description

 BCO-DMO Processing/Edits
- Generated from data in original file "GOM_GB_nuts_TS_Alex_v2.tar.gz" contributed by Olga Kosnyrev
- Awk routine "GoMEunderway2csv.awk" generated to convert bottle ".txt" files to BCO-DMO .csv files


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Data Files

File
Underway_Data.csv
(Comma Separated Values (.csv), 59.39 KB)
MD5:815b66492c03a7d1661678d8a0e362e9
Primary data file for dataset ID 3359

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Parameters

ParameterDescriptionUnits
stationUnderway station numbers are indicated with ".1" and ".3" which mean: ".1" - UW between CTD stations; ".3" - UW at the CTD location.   x.x
datedate (GMT) YYYYMMDD
timetime (GMT) HHMM
lonStation longitude (West is negative) decimal degrees
latStation latitude (South is negative) decimal degrees
depth_nominalnominal depth m
AlexNumber of Alexandrium fundyense cells cells/L
Alex_LiveNumber of live Alexandrium fundyense cells cells/L
FlagFlag "NOTE" values and meaning: 1 - regular data; 2 - Alex multiple samples averaged; 3 - Nuts multiple samples averaged; 4 - Alex and Nuts multiple samples averaged; 5 - Alex Live multiple samples averaged integer
cruise_idOfficial cruise id text

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Deployments

OC447

Website
Platform
R/V Oceanus
Start Date
2008-05-28
End Date
2008-06-04
Description
The research objective is synoptic mapping of Alexandrium fundyense, hydrography, and velocity in the coastal current from Cape Cod to Bay of Fundy. The planned activities include CTD casts, drifter deployments, and water pumping. Scientific personnel: Dr. Dennis McGillicuddy, Chief Scientist, Woods Hole Oceanographic Institution Dr. Valery Kosnyrev, Woods Hole Oceanographic Institution Ms. Olga Kosnyreva, Woods Hole Oceanographic Institution Mr. Keston Smith, Woods Hole Oceanographic Institution Mr. Bruce Keafer, Woods Hole Oceanographic Institution Mr. Kerry Norton, Woods Hole Oceanographic Institution Dr. Bibiana Gomez Crespo, IIM/CSIC, Spain Dr. Luciano Fernandes, Woods Hole Oceanographic Institution Ms. Stacey Lee, Woods Hole Oceanographic Institution Dr. David Townsend, University of Maine Ms. Maura Thomas, University of Maine Mr. Nathan Rebuck, University of Maine Ms. Rachel Gettings, University of Maine Mr. Morgan Brunbauer, University of Maine Dr. Jefferson Turner, University of Massachusetts Dartmouth Mr. Peter Milligan, University of Massachusetts Dartmouth Ms. Meribeth Ratzel , Cape Cod Community College Dr. Laurence Anderson, Woods Hole Oceanographic Institution Mr. Alexander Dorsk, Woods Hole Oceanographic Institution WHOI cruise planning synopsis Cruise information and original data are available from the NSF R2R data catalog.

Methods & Sampling
Note: 1 "-9.99" value in these data

Processing Description
Note: 1 "-9.99" value in these data

OC445

Website
Platform
R/V Oceanus
Start Date
2008-04-28
End Date
2008-05-05
Description
The research objective is synoptic mapping of Alexandrium fundyense, hydrography, and velocity in the coastal current from Cape Cod to Georges Bank. The planned activities include CTD casts, drifter deployments, and water pumping. Scientific personnel: Dr. Dennis McGillicuddy, Jr., Chief Scientist, Woods Hole Oceanographic Institution Dr. Valery Kosnyrev, Woods Hole Oceanographic Institution Mr. Keston Smith, Woods Hole Oceanographic Institution Mr. Bruce Keafer, Woods Hole Oceanographic Institution Mr. Kerry Norton, Woods Hole Oceanographic Institution Dr. Bibiana Gomez Crespo, IIM/CSIC, Spain Dr. Luciano Fernandes, Woods Hole Oceanographic Institution Ms. Stacey Lee, Woods Hole Oceanographic Institution Dr. David Townsend, University of Maine Ms. Maura Thomas, University of Maine Mr. Nathan Rebuck , University of Maine Dr. Jefferson Turner, University of Massachusetts Dartmouth Mr. Peter Milligan, University of Massachusetts Dartmouth Ms. Meribeth Ratzel , Cape Cod Community College Mr. Artur Palacz, University of Maine Dr. Laurence Anderson, Woods Hole Oceanographic Institution Ms. Katherine Libera, Woods Hole Oceanographic Institution Ms. Erin Dupuis, Woods Hole Oceanographic Institution Mr. Alexander Dorsk, Woods Hole Oceanographic Institution WHOI cruise planning synopsis Cruise information and original data are available from the NSF R2R data catalog.

EN448

Website
Platform
R/V Endeavor
Start Date
2008-06-27
End Date
2008-07-03
Description
Methods & Sampling
Note: Date/Time mostly -9.99, Lat/Lon -9.99 (set to “nd”)

Processing Description
Note: Date/Time mostly -9.99, Lat/Lon -9.99 (set to “nd”)

EN451

Website
Platform
R/V Endeavor
Start Date
2008-08-07
End Date
2008-08-13
Description
Methods & Sampling
Note: Date/Time in these data are all "-9.99"

Processing Description
Note: Date/Time in these data are all "-9.99"

EN456

Website
Platform
R/V Endeavor
Start Date
2008-10-14
End Date
2008-10-22
Description
Methods & Sampling
Note: One Time in these data is "-9.99"> %R/V ndeavor N456-cyst cruise    %Live counts recorded at each cyst station    %No live counts at suspended cyst stations    %Order of sampling    %designated cyst station # 1    Area II_26 2    Area II_23 3    AreaII_21 4    Area II_16B 5    Area II_14 6    Area II_13B 7    Area II_12 8    Area II_11 9    91 10    90 11    89 12    88 13    87 14    86 15    85 16    84C 17    83 18    82 19    81 20    80 21    79 22    78 23    77 24    76 25    75 26    74 27    73 28    72 29    71 30    70 31    69 32    68 33    67 34    66 35    65 36    64 37    63 38    62 39    61 40    60 41    59 42    58 43    57 44    56 45    56B 46    56C 47    56D 48    56E 49    55 50    54 51    53 52    52 53    51 54    48 55    47 56    44 57    43 58    42 59    41 60    40 61    39 62    38 63    38B 64    38C 65    37 66    36 67    35 68    34 69    33 70    32B 71    31B 72    29B 73    28 74    27 75    26 76    25B 77    24B 78    23 79    22 80    21B 81    17 82    15 83    18 84    18D 85    14 86    13 87    19M 88    12M 89    12B 90    11 91    10 92    9 93    8 94    7 95    6 96    5 97    4 98    3 99    2 100    1

Processing Description
Note: One Time in these data is "-9.99"

TI303

Website
Platform
R/V Tioga
Start Date
2008-05-15
End Date
2008-05-16

TI313

Website
Platform
R/V Tioga
Start Date
2008-06-16
End Date
2008-06-17

TI314

Website
Platform
R/V Tioga
Start Date
2008-06-18
End Date
2008-06-19

OC402

Website
Platform
R/V Oceanus
Start Date
2004-05-18
End Date
2004-05-28
Description
MERHAB - Synoptic mapping of Alexandrium fundyense, hydrography, and velocity in the coastal current offshore of Casco and Penobscot Bays WHOI cruise planning synopsis Cruise information and original data are available from the NSF R2R data catalog.

Methods & Sampling
Note: Date/Time in these data are all "-9.99"

Processing Description
Note: Date/Time in these data are all "-9.99"

TI098

Website
Platform
R/V Tioga
Start Date
2005-06-03
End Date
2005-06-03
Description
Methods & Sampling
Note: Time in these data are all "-9.99"

Processing Description
Note: Time in these data are all "-9.99"

TI100

Website
Platform
R/V Tioga
Start Date
2005-06-09
End Date
2005-06-10
Description
Methods & Sampling
Note: Time in these data are all "-9.99"

Processing Description
Note: Time in these data are all "-9.99"

TI102

Website
Platform
R/V Tioga
Start Date
2005-06-15
End Date
2005-06-15
Description
Methods & Sampling
Note: Time in these data are all "-9.99"

Processing Description
Note: Time in these data are all "-9.99"

TI103

Website
Platform
R/V Tioga
Start Date
2005-06-16
End Date
2005-06-17
Description
Methods & Sampling
Note: Time in these data are all "-9.99"

Processing Description
Note: Time in these data are all "-9.99"

TI109

Website
Platform
R/V Tioga
Start Date
2005-06-28
End Date
2005-06-29
Description
Methods & Sampling
Note: Time in these data are all "-9.99"

Processing Description
Note: Time in these data are all "-9.99"

TI181

Website
Platform
R/V Tioga
Start Date
2006-05-17
End Date
2006-05-18
Description
Methods & Sampling
Note: Time in these data are all "-9.99"

Processing Description
Note: Time in these data are all "-9.99"

TI191

Website
Platform
R/V Tioga
Start Date
2006-06-29
End Date
2006-06-30

OC425

Website
Platform
R/V Oceanus
Start Date
2006-06-06
End Date
2006-06-17
Description
Synoptic mapping of Alexandrium fundyense, hydrography, and velocity in the coastal current from Cape Cod to the Bay of Fundy WHOI cruise planning synopsis Cruise information and original data are available from the NSF R2R data catalog.

OC440

Website
Platform
R/V Oceanus
Start Date
2007-10-08
End Date
2007-10-18
Description
GOMTOX: Dynamics of Alexandrium fundyense distributions in the Gulf of Maine: an observational and modeling study of nearshore and offshore shellfish toxicity, vertical toxin flux, and bloom dynamics in a complex shelf sea. The main scientific research objective is to determine the interannual and interdecadal distribution of Alexandrium fundyense (red tide) cysts in the Gulf of Maine and Bay of Fundy and onto Georges Bank as time permits. This will be the 3rd annual cyst survey onboard the R/V Oceanus. At each station, a Craib Corer will be deployed to sample surficial bottom sediments (top 3cm). Cores will be sectioned and processed on the way to each station. Science activities planned include Craib coring and CTD casts. Scientific personnel: Mr. Bruce Keafer, Chief Scientist, Woods Hole Oceanographic Institution Mr. Kerry Norton, Woods Hole Oceanographic Institution Mr. Scott McCue, Woods Hole Oceanographic Institution Ms. Lauren Heinen, Woods Hole Oceanographic Institution Ms. Hannah Blossom, Woods Hole Oceanographic Institution Dr. Luciano Fernandes, Woods Hole Oceanographic Institution Mr. Valery Kosnyrev, Woods Hole Oceanographic Institution Mr. Patrick Curran, Sea Education Association Mr. Dane Percy, University of Massachusetts-Dartmouth Ms. Murielle LeGresley, Fisheries and Oceans Canada Ms. Heather McCrae, Woods Hole Oceanographic Institution Mr. Christopher Hunt, University of New Hampshire Mr. Shawn Shellito, University of New Hampshire Ms. Bryn Warren, Northeastern University guest student Ms. Theresa Hattenrath, State University of New York Mr. Alexander Dorsk, Woods Hole Oceanographic Institution WHOI cruise planning synopsis Cruise information and original data are available from the NSF R2R data catalog.

Methods & Sampling
Note: Time in these data are all "-9.99" %OC440 live counts    "%October 8-18, 2007"    %counts started 4 days into the cruise after detection of Alexandrium by Luciano    %Order of sampling    cyst station # 1    29B 2    28 3    27 4    26 5    25B 6    24B 7    23 8    22 9    21-B 10    17 11    18 12    18D 13    19M 14    12M 15    12B 16    11 17    10 18    9 19    8 20    7 21    6 22    5 23    3 24    2 25    1 26    14 27    15 28    T-1 29    T-2 30    T-3 31    T-4 32    T-5 33    T-6 34    T-7 35    T-8 36    T-9 37    T-10 38    T-11 39    T-12 40    LegII_UNH2 41    LegII_st 01 42    LegII_Taylor 3 43    LegII_Taylor 4 44    LegII_Taylor 2 45    LegII_Taylor 1 46    LegII_Taylor 5 47    LegII_Taylor 6 48    LegII_Taylor 7B 49    LegII_Taylor 8 50    LegII_st 09 51    LegII_st 10 52    LegII_st 11 53    LegII_st 12 54    LegII_st 12B 55    LegII_st 13 56    LegII_st 13B 57    LegII_st 14 58    LegII_st 15 59    LegII_st 16 60    LegII_st 17 61    LegII_st 18 62    LegII_st 19 63    LegII_st 20 64    LegII_st 21 65    LegII_T-13 66    LegII_T-14 67    LegII_st 22 68    LegII_st 23 69    LegII_st 24 70    LegII_st 25 71    LegII_st 26 72    LegII_st 27 73    LegII_st 28 74    LegII_st 28B 75    LegII_st 28C 76    LegII_UNH3 77    LegII_st 29 78    LegII_st 29B 79    LegII_st 30

Processing Description
Note: Time in these data are all "-9.99"

EN435

Website
Platform
R/V Endeavor
Start Date
2007-05-17
End Date
2007-06-01
Description
Methods & Sampling
Note: Some Dates/Times in these data are "-9.99"

Processing Description
Note: Some Dates/Times in these data are "-9.99"

TI383

Website
Platform
R/V Tioga
Start Date
2009-07-12
End Date
2009-07-12

TI386

Website
Platform
R/V Tioga
Start Date
2009-07-19
End Date
2009-07-23

OC467

Website
Platform
R/V Oceanus
Start Date
2010-07-29
End Date
2010-08-06
Description
Synoptic mapping of Alexandrium fundyense, hydrography, and velocity in the coastal current from Cape Cod to Georges Bank, Cape Cod to Bay of Fundy. OC467 is one of the GOMTOX project cruises to study the dynamics of Alexandrium fundyense distributions in the Gulf of Maine. GOMTOX is an observational and modeling study of nearshore and offshore shellfish toxicity, vertical toxin flux, and bloom dynamics in the Gulf of Maine, a complex shelf sea region. WHOI cruise planning synopsis Cruise information and original data are available from the NSF R2R data catalog

EN437

Website
Platform
R/V Endeavor
Start Date
2007-06-27
End Date
2007-07-06
Description
Methods & Sampling
Note: 1 data point with time of  "-9.99"

Processing Description
Note: 1 data point with time of  "-9.99"

OC415-01

Website
Platform
R/V Oceanus
Report
Start Date
2005-06-20
End Date
2005-07-15
Description
EDDIES project 2005 Survey 1 cruise Funded by: NSF OCE-0241310 Original cruise data are available from the NSF R2R data catalog


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Project Information

Investigations of Alexandrium fundyense dynamics in the Gulf of Maine (ALEX-GoME)

Coverage: Gulf of Maine


Investigations of Alexandrium fundyense dynamics in the Gulf of Maine

Project Summary
Harmful algal blooms, commonly called "red tides" or HABs, are a serious economic and public health problem throughout the world. In the U.S., the most serious HAB problem is paralytic shellfish poisoning (PSP) , a potentially fatal neurological disorder caused by human ingestion of shellfish that accumulate toxins as they feed on dinoflagellates of the genus Alexandrium. These organisms cause human illness and death due to PSP, repeated shellfish harvest quarantines, and the mortality of fish and marine mammals. This phenomenon, which affects thousands of miles of U.S. coastline and numerous fisheries resources, has expanded dramatically in the last two decades, especially in the Gulf of Maine. ECOHAB-GOM is a project that addresses several fundamental issues regarding Alexandrium blooms in the Gulf of Maine: 1) the source of the Alexandrium cells that appear in the fresh water plumes in the western Maine coastal current (WMCC); 2) Alexandrium cell distribution and dynamics in the eastern Maine coastal current (EMCC); and 3) linkages among blooms in the WMCC, the EMCC and on Georges Bank. Utilizing a combination of numerical modeling, hydrographic, chemical, and biological measurements, moored and drifting current measurements, and satellite imagery, we are working to characterize the structure, variability and autecology of the major Alexandrium habitats in the Gulf of Maine.

Summary of Data Sources by Year
2003 – MERHAB (McGillicuddy)
2004 – MERHAB
2005 – WHCOHH (Stegeman)
2006 – NOAA Rapid Response (Anderson) / WHCOHH
2007 – GOMTOX (Anderson) / WHCOHH
2008 – GOMTOX / WHCOHH
2009 – GOMTOX / WHCOHH
2010 – GOMTOX / WHCOHH

Summary of Funding Sources by Years
The cruises from 2003-2004 were supported by NOAA grant NA160P2785 (MERHAB).

The cruises from 2005-2010 were jointly funded:
NSF grant OCE-0430724 and NIEHS grant 1P50-ES01274201 (Woods Hole Center for Oceans and Human Health)
NOAA grant NA06NOS4780245 (GOMTOX)



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Funding

Funding SourceAward
National Oceanic and Atmospheric Administration (NOAA)
National Institute of Environmental Health Sciences (NIEHS)
NSF Division of Ocean Sciences (NSF OCE)
National Oceanic and Atmospheric Administration (NOAA)

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