http://lod.bco-dmo.org/id/dataset/3366
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2010-09-08
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Underway data including temperature, salinity, fluorometry, pigments from RVIB Nathaniel B. Palmer NBP0601 cruise in the Ross Sea Southern Ocean (CORSACS project)
2010-09-09
publication
2010-09-09
revision
BCO-DMO Linked Data URI
2010-09-09
creation
http://lod.bco-dmo.org/id/dataset/3366
Giacomo DiTullio
College of Charleston - Hollings Marine Lab
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: DiTullio, G. (2010) Underway data including temperature, salinity, fluorometry, pigments from RVIB Nathaniel B. Palmer NBP0601 cruise in the Ross Sea Southern Ocean (CORSACS project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 09 September 2010) Version Date 2010-09-09 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/3366 [access date]
Underway data including T, S, fluor, pigments Dataset Description: <p>Underway measurements from shipboard data acquisition system. Reported data include salinity, temperature, fluorescence and pigment measurements.</p> Methods and Sampling: <p>Underway water samples were drawn from the shipboard seawater pumping system, so these are near surface samples. Seawater was pumped in from the surface, through the underway flow through sysem while the ship was moving.</p>
<p>Algal HPLC pigment samples were collected by gentle filtration under low vacuum through GF/F filters and frozen in LN for on-shore analyses. Samples were extracted in 90% acetone and analyzed using a HP 1050 HPLC system equipped with autosampler, photodiode array and fluorescence detectors. The gradient elution program utilized was a slight modification of the Zapata et al. method (2000). Complete details of the HPLC method are described elsewhere (DiTullio and Geesey 2002). Replicate injections of standard pigments (purified from algal cultures in lab) produced a coefficient of variation of 3% with a limit of detection of approximately 1 ng.</p>
<p><strong>References:</strong> <br />
DiTullio, G.R., Geesey, M.E., 2002. Photosynthetic pigments in marine algae and bacteria. In: Bitton, G. (Ed.), The Encyclopedia of Environmental Microbiology. John Wiley &amp; Sons, Inc., New York, NY, pp. 2453-2470.</p>
<p>Zapata, M., Rodriguez, F., Garrido, J.L., 2000. Separation of chlorophylls and carotenoids from marine phytoplankton: a new HPLC method using a reversed phase C8 column and pyridine-containing mobile phases. Marine Ecology Progress Series 195 (29-45).</p>
Funding provided by NSF Office of Polar Programs (formerly NSF PLR) (NSF OPP) Award Number: OPP-0338097 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=0338097
completed
Giacomo DiTullio
College of Charleston - Hollings Marine Lab
843-953-9196
Hollings Marine Lab 205 Fort Johnson Rd.
Charleston
SC
29412
USA
ditullioj@cofc.edu
pointOfContact
asNeeded
Dataset Version: 09 September 2010
Unknown
date
time
lat
lon
temp
sal
fluor
sample
mg_dvp_a5
chl_c2
chl_c1
peridinin
fucox_but
fucox
neox
prasinox
violax
fucox_hex
diadinox
cis_fucox
allox
diatox
monad
zeax
lutein
crocox
chl_a2
chl_a_tot
carotene_a
carotene_b
chl_c3
chl_b
chl_c_MVP
chlide
p_phorbide
p_phytin
High Performance Liquid Chromatograph
theme
None, User defined
date
time of day
latitude
longitude
water temperature at measurement depth
salinity
fluorescence
sample identification
mg_dvp_a5
chlorophyll c2
chlorophyll c1
peridinin
19-prime-butanoyloxyfucoxanthin
fucoxanthin
neoxanthin
prasinoxanthin
violaxanthin
19-prime-hexanoyloxyfucoxanthin
diadinoxanthin
cis-fucoxanthin
alloxanthin
diatoxanthin
monad
zeaxanthin
lutein
crocoxanthin pigment
divinyl chlorophyll a
chlorophyll a
carotene-alpha
carotene-beta
chlorophyll c3
chlorophyll b
No BCO-DMO term
chlorophyllide
pheophorbide a
pheophytin a
featureType
BCO-DMO Standard Parameters
High-Performance Liquid Chromatograph
instrument
BCO-DMO Standard Instruments
NBP0601
service
Deployment Activity
Ross Sea Southern Ocean
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Ocean Carbon and Biogeochemistry
http://us-ocb.org/
Ocean Carbon and Biogeochemistry
The Ocean Carbon and Biogeochemistry (OCB) program focuses on the ocean's role as a component of the global Earth system, bringing together research in geochemistry, ocean physics, and ecology that inform on and advance our understanding of ocean biogeochemistry. The overall program goals are to promote, plan, and coordinate collaborative, multidisciplinary research opportunities within the U.S. research community and with international partners. Important OCB-related activities currently include: the Ocean Carbon and Climate Change (OCCC) and the North American Carbon Program (NACP); U.S. contributions to IMBER, SOLAS, CARBOOCEAN; and numerous U.S. single-investigator and medium-size research projects funded by U.S. federal agencies including NASA, NOAA, and NSF.
The scientific mission of OCB is to study the evolving role of the ocean in the global carbon cycle, in the face of environmental variability and change through studies of marine biogeochemical cycles and associated ecosystems.
The overarching OCB science themes include improved understanding and prediction of: 1) oceanic uptake and release of atmospheric CO2 and other greenhouse gases and 2) environmental sensitivities of biogeochemical cycles, marine ecosystems, and interactions between the two.
The OCB Research Priorities (updated January 2012) include: ocean acidification; terrestrial/coastal carbon fluxes and exchanges; climate sensitivities of and change in ecosystem structure and associated impacts on biogeochemical cycles; mesopelagic ecological and biogeochemical interactions; benthic-pelagic feedbacks on biogeochemical cycles; ocean carbon uptake and storage; and expanding low-oxygen conditions in the coastal and open oceans.
OCB
largerWorkCitation
program
Controls of Ross Sea Algal Community Structure
http://www.whoi.edu/sites/corsacs
Controls of Ross Sea Algal Community Structure
<h3>Project summary</h3>
<p>The Controls of Ross Sea Algal Community Structure (CORSACS) project was funded by the NSF Office of Polar Programs as "Collaborative Research: Interactive Effects of Iron, Light and Carbon Dioxide on Phytoplankton Community Dynamics in the Ross Sea". Two cruises were completed in 2006 to investigate the interactions between the primary productivity of the Ross Sea and pCO2, iron and other trace elements. Data sets of carbon, nutrient, metal, and biological measurements will be reported.</p>
<p>The main objective in the proposed research was to investigate the relative importance and potential interactive effects of iron, light and CO2 levels in structuring algal assemblages and growth rates in the Ross Sea. The investigators hypothesized that the interaction of these three variables largely determines the bottom-up control on these two dominant Southern Ocean phytoplankton taxa. While grazing and other loss processes are important variables in determining the relative dominance of these two taxa, the CORSACS research project was designed to focus on the bottom-up control mechanisms. It is important to understand such environmentally-driven taxonomic shifts in primary production, since they are expected to impact the fixation and export of carbon and nutrients, and the production of DMS, thus potentially providing both positive and negative feedbacks on climate.</p>
<p>The CORSACS investigators considered a range of ambient iron, light and pCO2 levels that span those typically observed in the Ross Sea during the growing season. That is, dissolved iron ranging from ~0.1 nM (low iron) to greater than 1 nM (high iron) (Fitzwater et al. 2000; Sedwick et al. 2000); mean irradiance (resulting from vertical mixing/self shading) ranging from less than 10% Io (low light) to greater than 40% (high light) (Arrigo et al., 1998, 1999), possibly adjusted based on field observations during the CORSACS cruises; and pCO2 ranging (Sweeney et al. 2001) from ~150 ppm (low CO2) to the probable higher levels of pCO2 - 750 ppm as a conservative estimate - that are likely to be attained later this century due to anthropogenic perturbation of the global carbon cycle (IPCC, 2001).</p>
<p>From the information previously available from both field observations and experiments, the investigators formulated the following specific hypotheses regarding the interactive role of iron, light and CO2 in regulating algal composition in the Ross Sea: diatoms bloom in the southern Ross Sea only under optimum conditions of high iron, light and pCO2; colonial Phaeocystis dominate under conditions of high iron with either (or both) low light or low pCO2; and solitary Phaeocystis are predominant under conditions of low iron with either (or both) low light or low pCO2.</p>
<h4>References:</h4>
<p>Fitzwater, S.E., K.S. Johnson, R.M. Gordon, K.H. Coale, and W.O. Smith, Jr. (2000). Trace metal concentrations in the Ross Sea and their relationship with nutrients and growth. Deep-Sea Research II, 47: 3159-3179.</p>
<p>Martin JH, Gordon RM, Fitzwater SE. Iron in Antarctic waters. Nature 1990 ;345(6271):156-158. Martin JH. 1990. Glacial-interglacial CO2 change: The iron hypothesis. Paleoceanography 5(1):1-13</p>
<p>P. N. Sedwick, G. R. DiTullio, and D. J. Mackey, Iron and manganese in the Ross Sea, Antarctica: Seasonal iron limitation in Antarctic shelf waters, Journal of Geophysical Research, 105 (C5), 11,321-11,336, 2000.</p>
<p>Sweeney, C. K. Arrigo, and G. van Gijken (2001). Prediction of seasonal changes in surface pCO2 in the Ross Sea, Antarctica using ocean color satellite data. 2001 Annual AGU meeting, San Fransisco, CA Dec. 10-15.</p>
<p>IPCC, 2001: Climate Change 2001: Synthesis Report. A Contribution of Working Groups I, II, and III to the Third Assessment Report of theIntegovernmental Panel on Climate Change [Watson, R.T. and the Core Writing Team (eds.)]. Cambridge University Press, Cambridge,United Kingdom, and New York, NY, USA, 398 pp.</p>
<p><strong>Publications</strong></p>
<p>Saito, M. A., Goepfert, T. J., Noble, A. E., Bertrand, E. M., Sedwick, P. N., and DiTullio, G. R.: A seasonal study of dissolved cobalt in the Ross Sea, Antarctica: micronutrient behavior, absence of scavenging, and relationships with Zn, Cd, and P, Biogeosciences, 7, 4059-4082, doi:10.5194/bg-7-4059-2010, 2010 (<a href="http://www.biogeosciences.net/7/4059/2010/bg-7-4059-2010.html">http://www.biogeosciences.net/7/4059/2010/bg-7-4059-2010.html</a>)</p>
<p>Bertrand EM, Saito MA, Lee PA, Dunbar RB, Sedwick PN and DiTullio GR (2011) Iron limitation of a springtime bacterial and phytoplankton community in the Ross Sea: implications for vitamin B12 nutrition. Front. Microbio. 2:160. doi: 10.3389/fmicb.2011.00160 (<a href="http://www.frontiersin.org/Aquatic_Microbiology/10.3389/fmicb.2011.00160/abstract">http://www.frontiersin.org/Aquatic_Microbiology/10.3389/fmicb.2011.00160/abstract</a>)</p>
CORSACS
largerWorkCitation
project
eng; USA
oceans
Ross Sea Southern Ocean
2010-09-09
Ross Sea Southern Ocean
0
BCO-DMO catalogue of parameters from Underway data including temperature, salinity, fluorometry, pigments from RVIB Nathaniel B. Palmer NBP0601 cruise in the Ross Sea Southern Ocean (CORSACS project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/22274.rdf
Name: date
Units: YYMMDD
Description: <p>GMT date of sampling</p>
http://lod.bco-dmo.org/id/dataset-parameter/22275.rdf
Name: time
Units: HHMM
Description: <p>GMT time of sampling</p>
http://lod.bco-dmo.org/id/dataset-parameter/22276.rdf
Name: lat
Units: decimal degrees
Description: <p>latitude (negative denotes South)</p>
http://lod.bco-dmo.org/id/dataset-parameter/22277.rdf
Name: lon
Units: decimal degrees
Description: <p>longitude (negative denotes West)</p>
http://lod.bco-dmo.org/id/dataset-parameter/22278.rdf
Name: temp
Units: degrees Celsius
Description: <p>temperature (ITS 90)</p>
http://lod.bco-dmo.org/id/dataset-parameter/22279.rdf
Name: sal
Units: dimensionless
Description: <p>salinity (PSU)</p>
http://lod.bco-dmo.org/id/dataset-parameter/22280.rdf
Name: fluor
Units: relative units
Description: <p>fluorescence</p>
http://lod.bco-dmo.org/id/dataset-parameter/22281.rdf
Name: sample
Units: dimensionless
Description: <p>sample number for pigment analysis</p>
http://lod.bco-dmo.org/id/dataset-parameter/22282.rdf
Name: mg_dvp_a5
Units: nanograms/liter
Description: <p>magnesium-2 4-divinyl phaeoporphyrin a5 monomethyl ester</p>
http://lod.bco-dmo.org/id/dataset-parameter/22283.rdf
Name: chl_c2
Units: nanograms/liter
Description: <p>chlorophyll c2</p>
http://lod.bco-dmo.org/id/dataset-parameter/22284.rdf
Name: chl_c1
Units: nanograms/liter
Description: <p>chlorophyll c1</p>
http://lod.bco-dmo.org/id/dataset-parameter/22285.rdf
Name: peridinin
Units: nanograms/liter
Description: <p>peridinin</p>
http://lod.bco-dmo.org/id/dataset-parameter/22286.rdf
Name: fucox_but
Units: nanograms/liter
Description: <p>19-prime-butanoyloxyfucoxanthin</p>
http://lod.bco-dmo.org/id/dataset-parameter/22287.rdf
Name: fucox
Units: nanograms/liter
Description: <p>fucoxanthin</p>
http://lod.bco-dmo.org/id/dataset-parameter/22288.rdf
Name: neox
Units: nanograms/liter
Description: <p>neoxanthin</p>
http://lod.bco-dmo.org/id/dataset-parameter/22289.rdf
Name: prasinox
Units: nanograms/liter
Description: <p>prasinoxanthin</p>
http://lod.bco-dmo.org/id/dataset-parameter/22290.rdf
Name: violax
Units: nanograms/liter
Description: <p>violaxanthin</p>
http://lod.bco-dmo.org/id/dataset-parameter/22291.rdf
Name: fucox_hex
Units: nanograms/liter
Description: <p>19-prime-hexanoyloxyfucoxanthin</p>
http://lod.bco-dmo.org/id/dataset-parameter/22292.rdf
Name: diadinox
Units: nanograms/liter
Description: <p>diadinoxanthin</p>
http://lod.bco-dmo.org/id/dataset-parameter/22293.rdf
Name: cis_fucox
Units: nanograms/liter
Description: <p>cis_fucoxanthin</p>
http://lod.bco-dmo.org/id/dataset-parameter/22294.rdf
Name: allox
Units: nanograms/liter
Description: <p>alloxanthin</p>
http://lod.bco-dmo.org/id/dataset-parameter/22295.rdf
Name: diatox
Units: nanograms/liter
Description: <p>diatoxanthin</p>
http://lod.bco-dmo.org/id/dataset-parameter/22296.rdf
Name: monad
Units: nanograms/liter
Description: <p>monadoxanthin</p>
http://lod.bco-dmo.org/id/dataset-parameter/22297.rdf
Name: zeax
Units: nanograms/liter
Description: <p>zeaxanthin</p>
http://lod.bco-dmo.org/id/dataset-parameter/22298.rdf
Name: lutein
Units: nanograms/liter
Description: <p>lutein</p>
http://lod.bco-dmo.org/id/dataset-parameter/22299.rdf
Name: crocox
Units: nanograms/liter
Description: <p>crocoxanthin</p>
http://lod.bco-dmo.org/id/dataset-parameter/22300.rdf
Name: chl_a2
Units: nanograms/liter
Description: <p>divinyl chlorophyll a (also called DV Chl a)</p>
http://lod.bco-dmo.org/id/dataset-parameter/22301.rdf
Name: chl_a_tot
Units: nanograms/liter
Description: <p>sum of chlorophyll a like compounds</p>
http://lod.bco-dmo.org/id/dataset-parameter/22302.rdf
Name: carotene_a
Units: nanograms/liter
Description: <p>carotene-alpha</p>
http://lod.bco-dmo.org/id/dataset-parameter/22303.rdf
Name: carotene_b
Units: nanograms/liter
Description: <p>carotene-beta</p>
http://lod.bco-dmo.org/id/dataset-parameter/22304.rdf
Name: chl_c3
Units: nanograms/liter
Description: <p>chlorophyll c3</p>
http://lod.bco-dmo.org/id/dataset-parameter/22305.rdf
Name: chl_b
Units: nanograms/liter
Description: <p>chlorophyll b</p>
http://lod.bco-dmo.org/id/dataset-parameter/22306.rdf
Name: chl_c_MVP
Units: nanograms/liter
Description: <p>Chlorophyll C monovinyl protochlorophyllide</p>
http://lod.bco-dmo.org/id/dataset-parameter/22307.rdf
Name: chlide
Units: nanograms/liter
Description: <p>chlorophyllide</p>
http://lod.bco-dmo.org/id/dataset-parameter/22308.rdf
Name: p_phorbide
Units: nanograms/liter
Description: <p>phaeophorobide a (from chlorophyll a)</p>
http://lod.bco-dmo.org/id/dataset-parameter/22309.rdf
Name: p_phytin
Units: nanograms/liter
Description: <p>phaeophytin a (from chlorophyll a)</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
100740
https://datadocs.bco-dmo.org/file/nGGlA37Tx6LNyo/underway.csv
underway.csv
Primary data file for dataset ID 3366
download
https://osprey.bco-dmo.org/dataset/3366/data/download
download
onLine
dataset
<p>Underway water samples were drawn from the shipboard seawater pumping system, so these are near surface samples. Seawater was pumped in from the surface, through the underway flow through sysem while the ship was moving.</p>
<p>Algal HPLC pigment samples were collected by gentle filtration under low vacuum through GF/F filters and frozen in LN for on-shore analyses. Samples were extracted in 90% acetone and analyzed using a HP 1050 HPLC system equipped with autosampler, photodiode array and fluorescence detectors. The gradient elution program utilized was a slight modification of the Zapata et al. method (2000). Complete details of the HPLC method are described elsewhere (DiTullio and Geesey 2002). Replicate injections of standard pigments (purified from algal cultures in lab) produced a coefficient of variation of 3% with a limit of detection of approximately 1 ng.</p>
<p><strong>References:</strong> <br />
DiTullio, G.R., Geesey, M.E., 2002. Photosynthetic pigments in marine algae and bacteria. In: Bitton, G. (Ed.), The Encyclopedia of Environmental Microbiology. John Wiley &amp; Sons, Inc., New York, NY, pp. 2453-2470.</p>
<p>Zapata, M., Rodriguez, F., Garrido, J.L., 2000. Separation of chlorophylls and carotenoids from marine phytoplankton: a new HPLC method using a reversed phase C8 column and pyridine-containing mobile phases. Marine Ecology Progress Series 195 (29-45).</p>
Specified by the Principal Investigator(s)
<p>Pigment concentrations were determined using standard peak integration procedures.</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
High Performance Liquid Chromatograph
High Performance Liquid Chromatograph
PI Supplied Instrument Name: High Performance Liquid Chromatograph PI Supplied Instrument Description:HP 1050 HPLC system equipped with autosampler, photodiode array and fluorescence detectors Instrument Name: High-Performance Liquid Chromatograph Instrument Short Name:HPLC Instrument Description: A High-performance liquid chromatograph (HPLC) is a type of liquid chromatography used to separate compounds that are dissolved in solution. HPLC instruments consist of a reservoir of the mobile phase, a pump, an injector, a separation column, and a detector. Compounds are separated by high pressure pumping of the sample mixture onto a column packed with microspheres coated with the stationary phase. The different components in the mixture pass through the column at different rates due to differences in their partitioning behavior between the mobile liquid phase and the stationary phase. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/LAB11/
Cruise: NBP0601
NBP0601
Community Standard Description
International Council for the Exploration of the Sea
RVIB Nathaniel B. Palmer
vessel
NBP0601
Giacomo DiTullio
College of Charleston - Hollings Marine Lab
http://data.bco-dmo.org/CORSACS/cruises/Dunbar_Hydrography_report_NBP0601.pdf
Report describing NBP0601
Community Standard Description
International Council for the Exploration of the Sea
RVIB Nathaniel B. Palmer
vessel