http://lod.bco-dmo.org/id/dataset/3377
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2010-10-25
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
B12-vehicle dive sample log: dive samples (rock, fluid, biology) from R/V Thomas G. Thompson TN253 in the NE Pacific Ocean, Juan de Fuca Ridge, Axial Seamount from August to September 2010 (AXIAL project)
2010-10-25
publication
2010-10-25
revision
BCO-DMO Linked Data URI
2010-10-25
creation
http://lod.bco-dmo.org/id/dataset/3377
David A. Butterfield
University of Washington
principalInvestigator
Julie Huber
Marine Biological Laboratory
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Butterfield, D. A., Huber, J. (2010) B12-vehicle dive sample log: dive samples (rock, fluid, biology) from R/V Thomas G. Thompson TN253 in the NE Pacific Ocean, Juan de Fuca Ridge, Axial Seamount from August to September 2010 (AXIAL project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 25 October 2010) Version Date 2010-10-25 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/3377 [access date]
B12: Log: DIVE SAMPLES (Rock, Fluid, Biology) Dataset Description: <p>B12: Log: DIVE SAMPLES (Rock, Fluid, Biology) collected by the JASON ROV system<br />
Including samples from Recovered Long-Term Sampling Devices</p> Methods and Sampling: <p>Original form completed by: James Holden<br />
Original form completion date: 2010-09-06</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-0926199 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=0926199
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-0929167 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=0929167
completed
David A. Butterfield
University of Washington
206-526-6722
1045 PMEL, Bldg 3 7600 Sand Point Way NE
Seattle
WA
98115
USA
david.a.butterfield@noaa.gov
pointOfContact
Julie Huber
Marine Biological Laboratory
(508) 289-2556
Woods Hole Oceanographic Institution Marine Chemistry & Geochemistry, Watson Building, MS51
Woods Hole
MA
02543
USA
jhuber@whoi.edu
pointOfContact
asNeeded
Dataset Version: 25 October 2010
Unknown
Sample_ID
Physical_Sample_Type
Physical_Sample_Description
Sampling_Device_Type
Instrument_Device_Id_No
Cruise_Id
Start_Sample_Collection_DiveNo
Start_Sample_Collection_Date
Start_Sample_Collection_Time
End_Sample_Collection_DiveNo
End_Sample_Collection_Date
End_Sample_Collection_Time
Sampling_Device_Recovered
lat
Lat_Degrees
Lat_Minutes
lon
Lon_Degrees
Lon_Minutes
Local_XY_Origin
Local_X
Local_Y
Depth
Positioning_Method
Position_Src
Site_Description
Vehicle_Heading
Vehicle_Altitude
Vent_Environment_Temp
Vent_Environment_Salinity
Vent_Environment_Chlorinity
Contact_Person
Comments
theme
None, User defined
sample identification
sample type
sample description
instrument
inst_serial_numb
Cruise identfier
dive_id
date begin
time begin
date end
time_end
flag
latitude
longitude
x/y coordinate origin
xpos
ypos
depth
navigation type
navigation source
site description
heading of vehicle
altitude of vehicle
water temperature at measurement depth
salinity
No BCO-DMO term
person name
comments
featureType
BCO-DMO Standard Parameters
TN253
service
Deployment Activity
NE Pacific Ocean , Juan de Fuca Ridge, Axial Seamount
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Function, activity, and adaptation of microbial communities in geochemically diverse subseafloor habitats
http://www.pmel.noaa.gov/vents/index.html
Function, activity, and adaptation of microbial communities in geochemically diverse subseafloor habitats
<p><strong>Collaborative Research: Function, activity, and adaptation of microbial communities in geochemically diverse subseafloor habitats</strong></p>
<p>
The integration of both laboratory and field-based chemical and microbiological measurements into a quantitative predictive framework is crucial to understanding the microbial ecology of marine systems. This project work will provide a quantitative assessment of the functional diversity, activity, and physiological adaptation of microbial communities in geochemically diverse subseafloor habitats. Results will guide development of models for linking biogeochemical processes with particular microbial communities at deep-sea hydrothermal vents, with implications for other marine habitats as well. The focus of the effort is at Axial Seamount, a well-studied, active, deep-sea hydrothermal seamount in the NE Pacific Ocean. Samples already collected from Axial, along with a field program in Year 2, will serve as the foundation for the three objectives, which are to:</p>
<p>1. Determine and quantify the functional diversity and activity (expression) of key subseafloor microbial lineages at Axial Seamount.</p>
<p>2. Determine physiological adaptations to the subseafloor habitat by quantifying the growth response of Axial Seamount isolates to in-situ geochemical parameters.</p>
<p>3. Develop a quantitative predictive framework for linking particular types of geochemical vent conditions with specific microbial functional groups and activities at Axial Seamount.</p>
<p>Specific outcomes of this project include the creation of a comprehensive quantitative microbiological and chemical dataset on diffuse and adjacent high-temperature vents within Axial Seamount. This database will include chemical measurements (gases, nutrients, metals, isotopes, and calculated Gibbs free energies) relevant to microbial metabolic processes that can be compared to microbiological data (abundance and activity of microbial lineages and functional genes, growth rates of subseafloor isolates at relevant environmental conditions) using statistical analysis to identify how specific microbial activity is linked to the geochemical environment. This project builds on previous studies of microbial population structure and geochemical measurements at Axial Seamount and addresses critical gaps in current knowledge and understanding that are impeding progress of modeling hydrothermal systems. Results will increase understanding of deep-sea hydrothermal ecosystems as well as provide new insights into controls on the distribution and activity of marine microbial communities throughout the world's oceans.</p>
<p>
<a href="http://data.bco-dmo.org/AXIAL/nemo10-cruise-report.pdf" target="_blank">NeMO10 TN253 Cruise Report</a></p>
AXIAL
largerWorkCitation
project
eng; USA
oceans
NE Pacific Ocean , Juan de Fuca Ridge, Axial Seamount
2010-10-25
NE Pacific Ocean, Juan de Fuca Ridge, Axial Seamount
0
BCO-DMO catalogue of parameters from B12-vehicle dive sample log: dive samples (rock, fluid, biology) from R/V Thomas G. Thompson TN253 in the NE Pacific Ocean, Juan de Fuca Ridge, Axial Seamount from August to September 2010 (AXIAL project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/22531.rdf
Name: Sample_ID
Units: text
Description: <p>Unique Sample Id</p>
http://lod.bco-dmo.org/id/dataset-parameter/22532.rdf
Name: Physical_Sample_Type
Units: text
Description: <p>Physical Sample Type</p>
http://lod.bco-dmo.org/id/dataset-parameter/22533.rdf
Name: Physical_Sample_Description
Units: text
Description: <p>Physical Sample Description</p>
http://lod.bco-dmo.org/id/dataset-parameter/22534.rdf
Name: Sampling_Device_Type
Units: text
Description: <p>Sampling Device Type</p>
http://lod.bco-dmo.org/id/dataset-parameter/22535.rdf
Name: Instrument_Device_Id_No
Units: text
Description: <p>Instrument Device Id Number</p>
http://lod.bco-dmo.org/id/dataset-parameter/22536.rdf
Name: Cruise_Id
Units: text
Description: <p>Cruise Id</p>
http://lod.bco-dmo.org/id/dataset-parameter/22537.rdf
Name: Start_Sample_Collection_DiveNo
Units: text
Description: <p>Start Sample Collection JASON ROV Dive Number</p>
http://lod.bco-dmo.org/id/dataset-parameter/22538.rdf
Name: Start_Sample_Collection_Date
Units: YYYYMMDD
Description: <p>Start Sample Collection Date (GMT)</p>
http://lod.bco-dmo.org/id/dataset-parameter/22539.rdf
Name: Start_Sample_Collection_Time
Units: HHMM
Description: <p>Start Sample Collection Time (GMT)</p>
http://lod.bco-dmo.org/id/dataset-parameter/22540.rdf
Name: End_Sample_Collection_DiveNo
Units: text
Description: <p>End Sample Collection JASON ROV Dive Number</p>
http://lod.bco-dmo.org/id/dataset-parameter/22541.rdf
Name: End_Sample_Collection_Date
Units: YYYYMMDD
Description: <p>End Sample Collection Date (GMT)</p>
http://lod.bco-dmo.org/id/dataset-parameter/22542.rdf
Name: End_Sample_Collection_Time
Units: HHMM
Description: <p>End Sample Collection Time (GMT)</p>
http://lod.bco-dmo.org/id/dataset-parameter/22543.rdf
Name: Sampling_Device_Recovered
Units: text
Description: <p>Was Sampling Device Recovered (yes/no)</p>
http://lod.bco-dmo.org/id/dataset-parameter/22544.rdf
Name: lat
Units: decimal degrees
Description: <p>Sample latitude (South is negative)</p>
http://lod.bco-dmo.org/id/dataset-parameter/22545.rdf
Name: Lat_Degrees
Units: degrees
Description: <p>Sample latitude whole degrees (South is negative)</p>
http://lod.bco-dmo.org/id/dataset-parameter/22546.rdf
Name: Lat_Minutes
Units: decimal minutes
Description: <p>Sample latitude minutes (South is negative)</p>
http://lod.bco-dmo.org/id/dataset-parameter/22547.rdf
Name: lon
Units: decimal degrees
Description: <p>Sample longitude degrees (West is negative)</p>
http://lod.bco-dmo.org/id/dataset-parameter/22548.rdf
Name: Lon_Degrees
Units: degrees
Description: <p>Sample longitude whole degrees (West is negative)</p>
http://lod.bco-dmo.org/id/dataset-parameter/22549.rdf
Name: Lon_Minutes
Units: decimal minutes
Description: <p>Sample longitude minutes (West is negative)</p>
http://lod.bco-dmo.org/id/dataset-parameter/22550.rdf
Name: Local_XY_Origin
Units: decimal degrees
Description: <p>lat/lon of origin of local coordinate system</p>
http://lod.bco-dmo.org/id/dataset-parameter/22551.rdf
Name: Local_X
Units: meters
Description: <p>Sample Local X position</p>
http://lod.bco-dmo.org/id/dataset-parameter/22552.rdf
Name: Local_Y
Units: meters
Description: <p>Sample Local Y position</p>
http://lod.bco-dmo.org/id/dataset-parameter/22553.rdf
Name: Depth
Units: meters
Description: <p>Sample Depth</p>
http://lod.bco-dmo.org/id/dataset-parameter/22554.rdf
Name: Positioning_Method
Units: text
Description: <p>Sample positioning method (USBL; ALBL; DVL; etc)</p>
http://lod.bco-dmo.org/id/dataset-parameter/22555.rdf
Name: Position_Src
Units: text
Description: <p>Source of sample position (ReNav; Real Time; etc)</p>
http://lod.bco-dmo.org/id/dataset-parameter/22556.rdf
Name: Site_Description
Units: text
Description: <p>Site Description</p>
http://lod.bco-dmo.org/id/dataset-parameter/22557.rdf
Name: Vehicle_Heading
Units: degrees
Description: <p>Vehicle Heading</p>
http://lod.bco-dmo.org/id/dataset-parameter/22558.rdf
Name: Vehicle_Altitude
Units: meters
Description: <p>Vehicle Altitude</p>
http://lod.bco-dmo.org/id/dataset-parameter/22559.rdf
Name: Vent_Environment_Temp
Units: degrees Celsius
Description: <p>Vent Environment Temp</p>
http://lod.bco-dmo.org/id/dataset-parameter/22560.rdf
Name: Vent_Environment_Salinity
Units: ppm
Description: <p>Vent Environment Salinity</p>
http://lod.bco-dmo.org/id/dataset-parameter/22561.rdf
Name: Vent_Environment_Chlorinity
Units: mmol/kg
Description: <p>Vent Environment Chlorinity</p>
http://lod.bco-dmo.org/id/dataset-parameter/22562.rdf
Name: Contact_Person
Units: text
Description: <p>Contact Person</p>
http://lod.bco-dmo.org/id/dataset-parameter/22563.rdf
Name: Comments
Units: text
Description: <p>Comments</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
34099
https://datadocs.bco-dmo.org/file/yppz43ziJEoxQK/Dive_Sample_Log.csv
Dive_Sample_Log.csv
Primary data file for dataset ID 3377
download
https://osprey.bco-dmo.org/dataset/3377/data/download
download
onLine
dataset
<p>Original form completed by: James Holden<br />
Original form completion date: 2010-09-06</p>
Specified by the Principal Investigator(s)
<p><strong>BCO-DMO Processing Notes</strong><br />
Generated from original spreadsheet "TN253 B12-vehicle dive sample log.xls" contributed by David Butterfield<br />
<br />
<strong>BCO-DMO Edits</strong><br />
- Parameter names edited to conform to BCO-DMO naming convention found at <a href="http://usjgofs.whoi.edu/naming-guidelines.html" target="_blank">Choosing Parameter Name</a><br />
- dates reformatted to YYYYMMDD<br />
- times reformatted to HHMM<br />
- Positive Longitude minutes signed negative for West<br />
- Latitude degs,mins/Longitude degs,mins converted from degs, decimal minutes to decimal degrees<br />
- Latitude degs,minutes and Longitude degs, minutes retained<br />
- "nd" (BCO_DMO flag for no data) added to blank cells<br />
- Commas in fields converted to semi-colons<br />
- Sample error descriptions in Sample_ID field moved to Comments field</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Cruise: TN253
TN253
R/V Thomas G. Thompson
Community Standard Description
International Council for the Exploration of the Sea
R/V Thomas G. Thompson
vessel
TN253
William Chadwick
Oregon State University
http://data.bco-dmo.org/AXIAL/nemo10-cruise-report.pdf
Report describing TN253
R/V Thomas G. Thompson
Community Standard Description
International Council for the Exploration of the Sea
R/V Thomas G. Thompson
vessel