http://lod.bco-dmo.org/id/dataset/3549
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2011-09-29
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
SCANFISH data from R/V Pelican cruises PE03-NGOMEX, PE04-NGOMEX, PE06-NGOMEX, PE07-NGOMEX, PE09-05, PE11-06 in the Northern Gulf of Mexico, 28-30N 89-94W; 2003-2010 (GoMX NGOMEX project)
2011-09-27
publication
2011-09-27
revision
BCO-DMO Linked Data URI
2011-09-27
creation
http://lod.bco-dmo.org/id/dataset/3549
Michael R. Roman
University of Maryland Center for Environmental Science
principalInvestigator
William C. Boicourt
University of Maryland Center for Environmental Science
principalInvestigator
James J. Pierson
University of Maryland Center for Environmental Science
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Roman, M. R., Boicourt, W. C., Pierson, J. J. (2011) SCANFISH data from R/V Pelican cruises PE03-NGOMEX, PE04-NGOMEX, PE06-NGOMEX, PE07-NGOMEX, PE09-05, PE11-06 in the Northern Gulf of Mexico, 28-30N 89-94W; 2003-2010 (GoMX NGOMEX project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 27 September 2011) Version Date 2011-09-27 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/3549 [access date]
SCANFISH Dataset Description: <p>Mulit year SCANFISH data</p> Methods and Sampling: <p><a href="http://bcodata.whoi.edu//NGOMEX/ScanFish_produktblad_UK_web.pdf" target="_blank">SCANFISH System Description (.pdf)</a></p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1043261 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1043261
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1043248 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1043248
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1043249 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1043249
completed
Michael R. Roman
University of Maryland Center for Environmental Science
410-221-8425
Horn Point Laboratory 2020 Horns Point Road
Cambridge
MD
21613
USA
roman@umces.edu
pointOfContact
William C. Boicourt
University of Maryland Center for Environmental Science
410-221-8426
Horn Point Laboratory 2020 Horns Point Road
Cambridge
MD
21613
USA
boicourt@umces.edu
pointOfContact
James J. Pierson
University of Maryland Center for Environmental Science
410-221-8218
Horn Point Laboratory 2020 Horns Point Road
Cambridge
MD
21613
USA
jpierson@umces.edu
pointOfContact
asNeeded
Dataset Version: 27 September 2011
Unknown
Id
date
time
lon
lat
Pressure
Depth
Temperature
Salinity
Density
Oxygen
Oxygen_Corrected
CDOM
Fluor_CDOM
Fluor_WetStar
Backscatter
Chlorophyll_Conc
Year
Scanfish
theme
None, User defined
dataset_id
date
time of day
longitude
latitude
water pressure
depth
water temperature at measurement depth
salinity
density
dissolved Oxygen
O2 calibrated
CDOM_ppb
fluorescence
light backscattered
No BCO-DMO term
year
featureType
BCO-DMO Standard Parameters
Scanfish
instrument
BCO-DMO Standard Instruments
PE03-NGOMEX
PE04-NGOMEX
PE06-NGOMEX
PE07-NGOMEX
PE09-05
PE11-06
service
Deployment Activity
Northern Gulf of Mexico, 28-30N 89-94W
Northern Gulf of Mexico, 28-30N 89-94W
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Gulf of Mexico - Deepwater Horizon Oil Spill
https://osprey.bco-dmo.org/program/2028
Gulf of Mexico - Deepwater Horizon Oil Spill
Grants for Rapid Response Research (RAPID)
The RAPID funding mechanism is used for proposals having a severe urgency with regard to availability of, or access to data, facilities or specialized equipment, including quick-response research on natural or anthropogenic disasters and similar unanticipated events.
GOM - Broader Impacts
The need to understand the impact of this largest oil spill to date on ecosystems and biochemical cycling is self evident. The consequences of the disaster and accompanying clean up measures (e.g. the distribution of dispersants) need to be evaluated to guide further mediating measures and to develop and improve responses to similar disasters in the future. Would it be advantageous if such oil aggregates sink, or should it rather remain suspended? Possibly measures can be developed to enhance sinking or suspension (e.g. addition of ballast minerals) once we understand their current formation and fate. Understanding the particle dynamics following the input of large amounts of oil and dispersants into the water is a prerequisite to develop response strategies for now and in the future.
GoMX - DHOS
largerWorkCitation
program
NGOMEX - Living Marine Resources of the Northern Gulf of Mexico
https://osprey.bco-dmo.org/project/2123
NGOMEX - Living Marine Resources of the Northern Gulf of Mexico
<p><strong>NGOMEX - Living Organisms of the Northern Gulf of Mexico</strong><br />
A synthesis of data collected in the Northern Gulf of Mexico from 2003-2004, 2006-2008 and 2010<br />
Data include:<br />
- CTD Profiles<br />
- Rosette Samples<br />
- MIDAS underway metereological<br />
- Towed SCANFISH<br />
- Net Trawls<br />
- Zooplankton counts</p>
<p><em><strong>High-resolution mapping of the major ecosystem components of the NGOMEX by year</strong></em></p>
<p><img alt="" src="https://datadocs.bco-dmo.org/d2/NGOMEX/NGOMEX_Overall_Approach_By_Year.jpg" /></p>
<p><strong>References:</strong><br />
Kimmel, D. G., W. C. Boicourt, J. J. Pierson, M. R. Roman, X. Zhang. 2010. The vertical distribution and diel variability of mesozooplankton biomass, abundance and size in response to hypoxia in the northern Gulf of Mexico USA. Journal of Plankton Research 32(8): 1185-1202. doi:10.1093/plankt/fbp136</p>
<p>Pierson, J. J., M. R. Roman, D. G. Kimmel, W. C. Boicourt, & X. Zhang. 2009. Quantifying changes in the vertical distribution of mesozooplankton in response to hypoxic bottom waters. Journal of Experimental Marine Biology and Ecology 381: S74-S79. doi.org/10.1016/j.jembe.2009.07.013</p>
<p>Kimmel, D. G., W. C. Boicourt, J. J. Pierson, M. R. Roman, & X. Zhang. 2009. A comparison of the mesozooplankton response to hypoxia in Chesapeake Bay and the northern Gulf of Mexico using the biomass size spectrum. Journal of Experimental Marine Biology and Ecology 381: S65-S73. doi.org/10.1016/j.jembe.2009.07.012</p>
<p>Zhang, H., S. A. Ludsin, D. M. Mason, A. T. Adamack, S. B. Brandt, X. Zhang, D. G. Kimmel, M. R. Roman, & W. C. Boicourt. 2009. Hypoxia-driven changes in the behavior and spatial distribution of pelagic fish and mesozooplankton in the northern Gulf of Mexico. Journal of Experimental Marine Biology and Ecology. 381: S80-91. <a href="http://dx.doi.org/10.1016/j.jembe.2009.07.014">http://dx.doi.org/10.1016/j.jembe.2009.07.014</a></p>
GoMX - NGOMEX
largerWorkCitation
project
eng; USA
oceans
Northern Gulf of Mexico, 28-30N 89-94W; Northern Gulf of Mexico, 28-30N 89-94W
2011-09-27
Northern Gulf of Mexico, 28-30N 89-94W
0
BCO-DMO catalogue of parameters from SCANFISH data from R/V Pelican cruises PE03-NGOMEX, PE04-NGOMEX, PE06-NGOMEX, PE07-NGOMEX, PE09-05, PE11-06 in the Northern Gulf of Mexico, 28-30N 89-94W; 2003-2010 (GoMX NGOMEX project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/25955.rdf
Name: Id
Units: text
Description: <p>Scanfish Transect Id</p>
http://lod.bco-dmo.org/id/dataset-parameter/25956.rdf
Name: date
Units: YYYYMMDD
Description: <p>date (GMT)</p>
http://lod.bco-dmo.org/id/dataset-parameter/25957.rdf
Name: time
Units: HHMMSS.00
Description: <p>time(GMT)</p>
http://lod.bco-dmo.org/id/dataset-parameter/25958.rdf
Name: lon
Units: decimal degrees
Description: <p>longitude (West is negative)</p>
http://lod.bco-dmo.org/id/dataset-parameter/25959.rdf
Name: lat
Units: decimal degrees
Description: <p>latitude (South is negative)</p>
http://lod.bco-dmo.org/id/dataset-parameter/25960.rdf
Name: Pressure
Units: decibars
Description: <p>Pressure</p>
http://lod.bco-dmo.org/id/dataset-parameter/25961.rdf
Name: Depth
Units: meters
Description: <p>Depth</p>
http://lod.bco-dmo.org/id/dataset-parameter/25962.rdf
Name: Temperature
Units: degrees celcius
Description: <p>Temperature</p>
http://lod.bco-dmo.org/id/dataset-parameter/25963.rdf
Name: Salinity
Units: PSU
Description: <p>Salinity</p>
http://lod.bco-dmo.org/id/dataset-parameter/25964.rdf
Name: Density
Units: kg/m^3
Description: <p>Density</p>
http://lod.bco-dmo.org/id/dataset-parameter/25965.rdf
Name: Oxygen
Units: mg/l
Description: <p>Oxygen</p>
http://lod.bco-dmo.org/id/dataset-parameter/25966.rdf
Name: Oxygen_Corrected
Units: mg/l
Description: <p>Oxygen Corrected</p>
http://lod.bco-dmo.org/id/dataset-parameter/25967.rdf
Name: CDOM
Units: mg/m^3
Description: <p>Colored dissolved organic matter (CDOM)</p>
http://lod.bco-dmo.org/id/dataset-parameter/25968.rdf
Name: Fluor_CDOM
Units: mg/m^3
Description: <p>Fluor CDOM</p>
http://lod.bco-dmo.org/id/dataset-parameter/25969.rdf
Name: Fluor_WetStar
Units: mg/m^3
Description: <p>Fluor WetStar</p>
http://lod.bco-dmo.org/id/dataset-parameter/25970.rdf
Name: Backscatter
Units: volts
Description: <p>Backscatter</p>
http://lod.bco-dmo.org/id/dataset-parameter/25971.rdf
Name: Chlorophyll_Conc
Units: ug/l
Description: <p>Wet Star Chlorophyll Conc</p>
http://lod.bco-dmo.org/id/dataset-parameter/26024.rdf
Name: Year
Units: yyyy
Description: <p>Year of data collection</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
426236934
https://datadocs.bco-dmo.org/file/QAAXxwXSNmxPgY/SCANFISH.csv
SCANFISH.csv
Primary data file for dataset ID 3549
download
https://osprey.bco-dmo.org/dataset/3549/data/download
download
onLine
dataset
<p><a href="http://bcodata.whoi.edu//NGOMEX/ScanFish_produktblad_UK_web.pdf" target="_blank">SCANFISH System Description (.pdf)</a></p>
Specified by the Principal Investigator(s)
<p>Generated from SCANFISH .xlsx files contributed by Jamie Pierson</p>
<p>Scanfish CTD data were processed using the Sea-Bird Data Processing routines to filter, align, and bin-average data. In 2003 and 2004 dissolved oxygen was calibrated using a two step process. First, the shipboard CTD data was calibrated to niskin bottle samples using a Winkler titration performed in the lab of Nancy Rabalais. Then the Scanfish CTD were cross-calibrated to the shipboard CTD. In subsequent years, the shipboard CTD was pre-calibrated before our cruises, and we cross-calibrated the shipboard and Scanfish CTDs. The calibration between the Scanfish and shipboard CTDs was done in excel using a regression analysis to compare data from the same depths between the two instruments.</p>
from Cruise: PE03-NGOMEX <p><b>BCO-DMO Processing Notes</b><br>
<i>BCO-DMO Pass 1 Processing Description:</i><br />
- SCANFISH for years 2003, 2004, 2006, 2007, 2008, 2010 processed<br />
- Original data for individual years were reformatted to a BCO-DMO format as reported using either excel or an awk<br />
- Parameters/Data for the individual years were compared and a common set of parameters for all years was generated<br />
- Pass 1 data were then formatted to the Pass 2 or common data format using awk: NGOMEX_20[xx]_Fix_BCODMO_Scanfish.awk<br />
<br />
<i>BCO-DMO Pass 2 Processing Description:</i><br />
- Because of the nature of the original data reporting, an awk was generated for each individual year<br />
- A common header record was output for each year's worth of data<br />
- All parameters re-formatted to a set of parameters common to all NGOMEX SACFISH data<br />
- All parameters o/p in the same order<br />
- All decimal places reported to the same number<br />
- Data for parameters for which no data were reported for a particular year o/p as "nd"</p>
from Cruise: PE04-NGOMEX <p><b>BCO-DMO Processing Notes</b><br />
<i>BCO-DMO Pass 1 Processing Description:</i><br />
- SCANFISH for years 2003, 2004, 2006, 2007, 2008, 2010 processed<br />
- Original data for individual years were reformatted to a BCO-DMO format as reported using either excel or an awk<br />
- Parameters/Data for the individual years were compared and a common set of parameters for all years was generated<br />
- Pass 1 data were then formatted to the Pass 2 or common data format using awk: NGOMEX_20[xx]_Fix_BCODMO_Scanfish.awk<br />
<br />
<i>BCO-DMO Pass 2 Processing Description:</i><br />
- Because of the nature of the original data reporting, an awk was generated for each individual year<br />
- A common header record was output for each year's worth of data<br />
- All parameters re-formatted to a set of parameters common to all NGOMEX SACFISH data<br />
- All parameters o/p in the same order<br />
- All decimal places reported to the same number<br />
- Data for parameters for which no data were reported for a particular year o/p as "nd"</p>
from Cruise: PE06-NGOMEX <p><b>BCO-DMO Processing Notes</b><br />
<i>BCO-DMO Pass 1 Processing Description:</i><br />
- SCANFISH for years 2003, 2004, 2006, 2007, 2008, 2010 processed<br />
- Original data for individual years were reformatted to a BCO-DMO format as reported using either excel or an awk<br />
- Parameters/Data for the individual years were compared and a common set of parameters for all years was generated<br />
- Pass 1 data were then formatted to the Pass 2 or common data format using awk: NGOMEX_20[xx]_Fix_BCODMO_Scanfish.awk<br />
<br />
<i>BCO-DMO Pass 2 Processing Description:</i><br />
- Because of the nature of the original data reporting, an awk was generated for each individual year<br />
- A common header record was output for each year's worth of data<br />
- All parameters re-formatted to a set of parameters common to all NGOMEX SACFISH data<br />
- All parameters o/p in the same order<br />
- All decimal places reported to the same number<br />
- Data for parameters for which no data were reported for a particular year o/p as "nd"</p>
from Cruise: PE07-NGOMEX <p><b>BCO-DMO Processing Notes</b><br />
<i>BCO-DMO Pass 1 Processing Description:</i><br />
- SCANFISH for years 2003, 2004, 2006, 2007, 2008, 2010 processed<br />
- Original data for individual years were reformatted to a BCO-DMO format as reported using either excel or an awk<br />
- Parameters/Data for the individual years were compared and a common set of parameters for all years was generated<br />
- Pass 1 data were then formatted to the Pass 2 or common data format using awk: NGOMEX_20[xx]_Fix_BCODMO_Scanfish.awk<br />
<br />
<i>BCO-DMO Pass 2 Processing Description:</i><br />
- Because of the nature of the original data reporting, an awk was generated for each individual year<br />
- A common header record was output for each year's worth of data<br />
- All parameters re-formatted to a set of parameters common to all NGOMEX SACFISH data<br />
- All parameters o/p in the same order<br />
- All decimal places reported to the same number<br />
- Data for parameters for which no data were reported for a particular year o/p as "nd"</p>
from Cruise: PE09-05 <p><b>BCO-DMO Processing Notes</b><br />
<i>BCO-DMO Pass 1 Processing Description:</i><br />
- SCANFISH for years 2003, 2004, 2006, 2007, 2008, 2010 processed<br />
- Original data for individual years were reformatted to a BCO-DMO format as reported using either excel or an awk<br />
- Parameters/Data for the individual years were compared and a common set of parameters for all years was generated<br />
- Pass 1 data were then formatted to the Pass 2 or common data format using awk: NGOMEX_20[xx]_Fix_BCODMO_Scanfish.awk<br />
<br />
<i>BCO-DMO Pass 2 Processing Description:</i><br />
- Because of the nature of the original data reporting, an awk was generated for each individual year<br />
- A common header record was output for each year's worth of data<br />
- All parameters re-formatted to a set of parameters common to all NGOMEX SACFISH data<br />
- All parameters o/p in the same order<br />
- All decimal places reported to the same number<br />
- Data for parameters for which no data were reported for a particular year o/p as "nd"</p>
from Cruise: PE11-06 <p><b>BCO-DMO Processing Notes</b><br />
<i>BCO-DMO Pass 1 Processing Description:</i><br />
- SCANFISH for years 2003, 2004, 2006, 2007, 2008, 2010 processed<br />
- Original data for individual years were reformatted to a BCO-DMO format as reported using either excel or an awk<br />
- Parameters/Data for the individual years were compared and a common set of parameters for all years was generated<br />
- Pass 1 data were then formatted to the Pass 2 or common data format using awk: NGOMEX_20[xx]_Fix_BCODMO_Scanfish.awk<br />
<br />
<i>BCO-DMO Pass 2 Processing Description:</i><br />
- Because of the nature of the original data reporting, an awk was generated for each individual year<br />
- A common header record was output for each year's worth of data<br />
- All parameters re-formatted to a set of parameters common to all NGOMEX SACFISH data<br />
- All parameters o/p in the same order<br />
- All decimal places reported to the same number<br />
- Data for parameters for which no data were reported for a particular year o/p as "nd"</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Scanfish
Scanfish
PI Supplied Instrument Name: Scanfish Instrument Name: Scanfish Instrument Short Name:Scanfish Instrument Description: The Scanfish is a remotely operated, towed, undulating vehicle system designed for collecting 3D profile data of the water column. It includes a Conductivity, Temperature, Depth (CTD) profiler as part of the instrument package. The Scanfish housing has fins to allow it to dive and rise, an altimeter to determine the depth of the unit, a pump that moves water through the system and a data cable that reports data back to the ship as the fish is being towed through the water behind the vessel. The Scanfish can be configured with additional sensors, e.g. fluorometer. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/131/
Cruise: PE03-NGOMEX
PE03-NGOMEX
R/V Pelican
Community Standard Description
International Council for the Exploration of the Sea
R/V Pelican
vessel
PE03-NGOMEX
William C. Boicourt
University of Maryland Center for Environmental Science
Cruise: PE04-NGOMEX
PE04-NGOMEX
R/V Pelican
Community Standard Description
International Council for the Exploration of the Sea
R/V Pelican
vessel
PE04-NGOMEX
William C. Boicourt
University of Maryland Center for Environmental Science
Cruise: PE06-NGOMEX
PE06-NGOMEX
R/V Pelican
Community Standard Description
International Council for the Exploration of the Sea
R/V Pelican
vessel
PE06-NGOMEX
Michael R. Roman
University of Maryland Center for Environmental Science
Cruise: PE07-NGOMEX
PE07-NGOMEX
R/V Pelican
Community Standard Description
International Council for the Exploration of the Sea
R/V Pelican
vessel
PE07-NGOMEX
Michael R. Roman
University of Maryland Center for Environmental Science
Cruise: PE09-05
PE09-05
R/V Pelican
Community Standard Description
International Council for the Exploration of the Sea
R/V Pelican
vessel
PE09-05
Stephen E. Brandt
National Oceanic and Atmospheric Administration
Cruise: PE11-06
PE11-06
R/V Pelican
Community Standard Description
International Council for the Exploration of the Sea
R/V Pelican
vessel
PE11-06
Michael R. Roman
University of Maryland Center for Environmental Science
R/V Pelican
Community Standard Description
International Council for the Exploration of the Sea
R/V Pelican
vessel