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            <gco:CharacterString>Cite this dataset as: Pol, M. (2011) POTYEAR: Determining the Seasonality of Cod Pots: fish catch,size from fishing vessels NEC-MP2007-2 in Massachusetts Bay from 2008-2009 (NEC-CoopRes project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version final) Version Date 2011-11-08 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/3570 [access date]</gco:CharacterString>
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        <gco:CharacterString>POTYEAR: Determining the Seasonality of Cod Pots: fish catch,size Dataset Description: &amp;lt;p&amp;gt;Newfoundland-style, large, large-mesh static pots were compared to Norwegian-style, smaller, small-mesh, off-bottom, dynamic pots in a controlled study from a commercial fishing vessel from November 2008-November 2009. Results from analysis indicate that cod were most vulnerable to pots during a limited season, and that the smaller mesh pot caught more small cod. Otherwise, the pots performed similarly. We conclude that either pot style may be effective for further development, that seasonality plays an important role and should be exploited for further testing, and observation of near-field behavior in cod near pots is still vital and problematic.&amp;lt;/p&amp;gt;

&amp;lt;p&amp;gt;Objectives for continued development of cod pots:&amp;lt;/p&amp;gt;

&amp;lt;p&amp;gt;1. To compare catch rates and sizes of Atlantic cod captured in Norwegian and Newfoundland cod pots;&amp;lt;br /&amp;gt;
2. To compare catch rates and sizes of Atlantic cod over eight months;&amp;lt;br /&amp;gt;
3. To observe Atlantic cod behavior in reaction to bait and to cod pots.&amp;lt;/p&amp;gt; Methods and Sampling: &amp;lt;p&amp;gt;Tests were conducted onboard three similar vessels, primarily used for lobster pot fishing, each approx. 13 m, 260kW, equipped with a pot hauler and a boom.&amp;lt;/p&amp;gt;

&amp;lt;p&amp;gt;Ten pots each of the Newfoundland (NF) and Norwegian (NO) design were set singly in pairs approx. 0.25 nm apart for periods within each of eight months&amp;lt;/p&amp;gt;

&amp;lt;p&amp;gt;There were 383 pot-hauls on 24 trips; 377 pot-hauls were considered valid for analyses. Pairs where no cod were caught in either pot were removed for cod catch analyses, resulting in 114 pairs where at least one cod was present. Overall, pots were set in an area of approx. 16 sq. km, inside of Massachusetts state waters.&amp;lt;/p&amp;gt;

&amp;lt;p&amp;gt;Additionally, we attempted to conduct at least one filming session each month to observe fish behavior in the vicinity of a pot. An underwater camera was attached to an NF pot using an aluminum outrigger and video was live-fed to the vessel and recorded. A series of observations were planned to assess the effect of different aspects of the pot design on fish behavior. We planned to begin by filming a baited NF pot with side panels removed and top netting opened and rolled down, progressing stepwise to a fully enclosed, normal configuration.&amp;lt;/p&amp;gt;</gco:CharacterString>
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	Description: &lt;p&gt;year of sampling&lt;/p&gt; 
http://lod.bco-dmo.org/id/dataset-parameter/26229.rdf
	Name: cruise_id
	Units: dimensionless
	Description: &lt;p&gt;cruise identifier&lt;/p&gt; 
http://lod.bco-dmo.org/id/dataset-parameter/26230.rdf
	Name: month_local
	Units: unknown
	Description: &lt;p&gt;month; local time&lt;/p&gt; 
http://lod.bco-dmo.org/id/dataset-parameter/26231.rdf
	Name: day_local
	Units: unknown
	Description: &lt;p&gt;day; local time&lt;/p&gt; 
http://lod.bco-dmo.org/id/dataset-parameter/26232.rdf
	Name: haul_id_trip
	Units: unknown
	Description: &lt;p&gt;haul identification number&lt;/p&gt; 
http://lod.bco-dmo.org/id/dataset-parameter/26233.rdf
	Name: gear_desc
	Units: unknown
	Description: &lt;p&gt;gear description: Norwegian; collapsible; wiremesh; rigid; fishing rods (see Instruments section)&lt;/p&gt; 
http://lod.bco-dmo.org/id/dataset-parameter/26234.rdf
	Name: gear_nation
	Units: unknown
	Description: &lt;p&gt;origin for the gear: Norwegian or Newfoundland&lt;/p&gt; 
http://lod.bco-dmo.org/id/dataset-parameter/26235.rdf
	Name: time_set
	Units: HHmm
	Description: &lt;p&gt;local time when setting the pot was begun&lt;/p&gt; 
http://lod.bco-dmo.org/id/dataset-parameter/26236.rdf
	Name: lat_set
	Units: decimal degrees
	Description: &lt;p&gt;latitude where the pot was set; North is positive&lt;/p&gt; 
http://lod.bco-dmo.org/id/dataset-parameter/26237.rdf
	Name: lon_set
	Units: decimal degrees
	Description: &lt;p&gt;longitude where the pot was set; West is negative&lt;/p&gt; 
http://lod.bco-dmo.org/id/dataset-parameter/26238.rdf
	Name: time_haul
	Units: HHmm
	Description: &lt;p&gt;local time when hauling the pot was begun&lt;/p&gt; 
http://lod.bco-dmo.org/id/dataset-parameter/26239.rdf
	Name: lat_haul
	Units: decimal degrees
	Description: &lt;p&gt;latitude where the pot was hauled; North is positive&lt;/p&gt; 
http://lod.bco-dmo.org/id/dataset-parameter/26240.rdf
	Name: lon_haul
	Units: decimal degrees
	Description: &lt;p&gt;longitude where the pot was hauled; West is negative&lt;/p&gt; 
http://lod.bco-dmo.org/id/dataset-parameter/26241.rdf
	Name: duration
	Units: hours
	Description: &lt;p&gt;duration of pot deployment&lt;/p&gt; 
http://lod.bco-dmo.org/id/dataset-parameter/26242.rdf
	Name: temp_ss_F
	Units: degrees Fahrenheit
	Description: &lt;p&gt;sea surface temperature&lt;/p&gt; 
http://lod.bco-dmo.org/id/dataset-parameter/26243.rdf
	Name: depth_haul_begin
	Units: meters
	Description: &lt;p&gt;water depth at start of haul, from echosounder&lt;/p&gt; 
http://lod.bco-dmo.org/id/dataset-parameter/26244.rdf
	Name: comments_haul
	Units: unknown
	Description: &lt;p&gt;comments pertaining to the pots&lt;/p&gt; 
http://lod.bco-dmo.org/id/dataset-parameter/26245.rdf
	Name: species
	Units: unknown
	Description: &lt;p&gt;binomial that consists of a genus name followed by the species name of an organism&lt;/p&gt; 
http://lod.bco-dmo.org/id/dataset-parameter/26246.rdf
	Name: common_name
	Units: unknown
	Description: &lt;p&gt;commonly used name for a species&lt;/p&gt; 
http://lod.bco-dmo.org/id/dataset-parameter/26247.rdf
	Name: weight_catch_lb
	Units: pounds
	Description: &lt;p&gt;total weight of a pot catch&lt;/p&gt; 
http://lod.bco-dmo.org/id/dataset-parameter/26248.rdf
	Name: count
	Units: unknown
	Description: &lt;p&gt;number of fish in a pot&lt;/p&gt; 
http://lod.bco-dmo.org/id/dataset-parameter/26249.rdf
	Name: weight_lb
	Units: pounds
	Description: &lt;p&gt;wieght of individual fish&lt;/p&gt; 
http://lod.bco-dmo.org/id/dataset-parameter/26250.rdf
	Name: length_cm
	Units: centimeters
	Description: &lt;p&gt;length along midline of fish&lt;/p&gt; 
http://lod.bco-dmo.org/id/dataset-parameter/26251.rdf
	Name: comments_fish
	Units: unknown
	Description: &lt;p&gt;comments pertaining to the fish&lt;/p&gt; 
http://lod.bco-dmo.org/id/dataset-parameter/26252.rdf
	Name: yrday_local
	Units: unknown
	Description: &lt;p&gt;local day and decimal time, as 326.5 for the 326th day of the year, or November 22 at 1200 hours (noon)&lt;/p&gt; 
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                <gco:CharacterString>&amp;lt;p&amp;gt;Tests were conducted onboard three similar vessels, primarily used for lobster pot fishing, each approx. 13 m, 260kW, equipped with a pot hauler and a boom.&amp;lt;/p&amp;gt;

&amp;lt;p&amp;gt;Ten pots each of the Newfoundland (NF) and Norwegian (NO) design were set singly in pairs approx. 0.25 nm apart for periods within each of eight months&amp;lt;/p&amp;gt;

&amp;lt;p&amp;gt;There were 383 pot-hauls on 24 trips; 377 pot-hauls were considered valid for analyses. Pairs where no cod were caught in either pot were removed for cod catch analyses, resulting in 114 pairs where at least one cod was present. Overall, pots were set in an area of approx. 16 sq. km, inside of Massachusetts state waters.&amp;lt;/p&amp;gt;

&amp;lt;p&amp;gt;Additionally, we attempted to conduct at least one filming session each month to observe fish behavior in the vicinity of a pot. An underwater camera was attached to an NF pot using an aluminum outrigger and video was live-fed to the vessel and recorded. A series of observations were planned to assess the effect of different aspects of the pot design on fish behavior. We planned to begin by filming a baited NF pot with side panels removed and top netting opened and rolled down, progressing stepwise to a fully enclosed, normal configuration.&amp;lt;/p&amp;gt;</gco:CharacterString>
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                <gco:CharacterString>&amp;lt;p&amp;gt;Catch was identified, weighed, and measured. Operational and biological data were collected by DMF biologists, including: catch composition and weights for all species, midline lengths for Atlantic cod (and other species as practical) to the nearest cm, set and haul times, locations, weather conditions, depth, and bottom seawater temperature. Data were entered into a customized Access database and analyzed using the open-source statistical program R (R Development Core Team, 2009; Sarkar 2009).&amp;lt;/p&amp;gt;

&amp;lt;p&amp;gt;Holst and Revill (2009) described an implementation of Generalised Linear Mixed Models (GLMM) to paired catch experiments. This implementation allows fitting of curves of limited complexity to expected proportions-at-length (in our case, count of cod in NO pots/total count in both pots for each pair). GLMMs in the Holst and Revill (2009) method incorporate between-pair variance (Fryer, 1991). Four fixed-effect models (constant, linear, 2nd order, and 3rd order polynomial relationships of length) were tested, each using pair as a random effect. We used the penalised quasi likelihood function (glmm-PQL function in MASS package of the R statistical software (R Development Core Team, 2009)), where insignificant terms are removed based on the Wald’s test (Holst and Revill, 2009).&amp;lt;/p&amp;gt;

&amp;lt;p&amp;gt;Collected video was reviewed at least twice, by two separate reviewers. Observations of fish were noted, and identified to likely species where possible. Actions of fish relative to entry to the camera frame, direction, level of activity, and activity were noted. Pot motion, direction of current, and visibility of the pot were also recorded.&amp;lt;/p&amp;gt;</gco:CharacterString>
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The Norwegian design pots are collapsible two-chamber rectangular pots made of netting, with a single bridle with anchor along the short end of the pot, allowing it to float and to turn with the current, adapted from Furevik et al. (2008). They have one entrance at the opposite end as the bridle, and are made of 50 mm black poly mesh for the trap body and 50 mm white poly for the entrances (into the pot and between chambers). Three frames per pot were constructed of 2 cm diam. PVC electrical conduit, with 13 cm radius corners, glued with cement. The frame sizes were approx. 1.5 m x 1 m (4.79 ft x 3.28 ft), hung 0.7 m (2.3 ft) apart forming two chambers with a widemouth entrance in between. The bridles were anchored with &gt;5 kg links of chain. After several months, observations of cracking in the PVC and catches of lobsters suggested that pots were not floating as expected. A pot was set in a large-scale, laboratory sea water tank, and did not float off bottom. The PVC pipes were then perforated and 11 deep-water gillnet floats were added along the upper frame to achieve proper orientation. All NO pots were subsequently modified in this manner. During the tank investigation, the top of the NO pot was measured to be 3 m off bottom; the bottom of the pot was 1.5 m off-bottom.
Locally caught clams, shelled and frozen, were used for bait during the field research. Pots were set and hauled on three or four consecutive days in each month. Instrument Name: Cod Pot Instrument Short Name:Cod Pot   Instrument Description: Crab pots modified to catch cod.  Variously designed: floating v. static; large v. small; two or more large entrances v. one small entrance, rigid v. collapsible. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/63/</gco:CharacterString>
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