http://lod.bco-dmo.org/id/dataset/3603
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2012-01-19
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Alvin dive log from off Costa Rica from R/V Atlantis AT15-59, AT15-44 in the Pacific Ocean off Costa Rica, Pacific, off Costa Rica from 2009-2010 (Seep Carbonate Ecology CROCKS II project)
2012-01-19
publication
2012-01-19
revision
BCO-DMO Linked Data URI
2012-01-19
creation
http://lod.bco-dmo.org/id/dataset/3603
Lisa A. Levin
University of California-San Diego Scripps
principalInvestigator
Victoria J. Orphan
California Institute of Technology
principalInvestigator
Anthony E Rathburn
Indiana State University
principalInvestigator
Gregory Rouse
University of California-San Diego Scripps
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Levin, L. A., Orphan, V. J., Rouse, G., Rathburn, A. E., Levin, L. A., Orphan, V. J., Rathburn, A. E., Rouse, G. (2012) Alvin dive log from off Costa Rica from R/V Atlantis AT15-59, AT15-44 in the Pacific Ocean off Costa Rica, Pacific, off Costa Rica from 2009-2010 (Seep Carbonate Ecology CROCKS II project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). Version Date 2012-01-19 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/3603 [access date]
Alvin dive log from off Costa Rica January 2010 Dataset Description: <p>Atlantis/Alvin cruise off Costa Rica</p>
<p>The primary goal of the cruise was to recover biological experiments deployed at active and inactive seep areas during Feb./March 2009. We successfully recovered 23/24 experimental units deployed on Mound 12, Costa Rica. One was simply missing on the sea floor. By using a gear elevator each day to maximize sample collection (and reserve ALVIN basket space for experiments) we were able to recover our experiments rapidly. This left us time for exploration of unusual biological communities at Jaco Scar.</p> Methods and Sampling: <p>Equipment used: standard Alvin tubecores; Ocean Instruments multicorer; Seabird CTD with O2 sensor.<br />
<br />
Where indicated, sediment samples from tube cores were sectioned vertically and preserved in buffered formaldehyde (standard procedures) or frozen at -80&ordm;C.<br />
<br />
Colonization substrates had macrofauna (&gt;0.3 mm) and meiofauna (&gt;0.42 microns) removed and preserved.&nbsp; Representative individuals were frozen for subsequent stable isotope analyses.</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-0825791 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=0825791
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-0826254 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=0826254
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-0939559 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=0939559
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-0825436 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=0825436
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-0939232 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=0939232
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-0939557 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=0939557
onGoing
Lisa A. Levin
University of California-San Diego Scripps
858-534-3579
9500 Gilman Drive Mail Code: 0218
La Jolla
CA
92093-0218
USA
llevin@ucsd.edu
pointOfContact
Victoria J. Orphan
California Institute of Technology
626-395-1786
109A North Mudd MC 100-23
Pasadena
CA
91125
USA
vorphan@caltech.edu
pointOfContact
Anthony E Rathburn
Indiana State University
812 237 2269
Earth and Environmental Sciences, Geology Program Science Bldg 159
Terre Haute
IN
47809
USA
trathburn@gmail.com
pointOfContact
Gregory Rouse
University of California-San Diego Scripps
858-534-7973
9500 Gilman Drive Mail Code: 0202
La Jolla
CA
92093
USA
grouse@ucsd.edu
pointOfContact
asNeeded
Unknown
dive
station
lat
lon
depth_w
location
habitat
seep_activity
sample_type
replicate
sample_id
photos
comments
fate
yrday_gmt
year
month
day
Alvin tube core
CTD Sea-Bird
Multi Corer
theme
None, User defined
No BCO-DMO term
site
latitude
longitude
depth_w
sample type
replicate
sample identification
comments
day of year and decimal time (time zone GMT)
year
month_gmt
day_gmt
featureType
BCO-DMO Standard Parameters
Alvin tube core
CTD Sea-Bird
Multi Corer
instrument
BCO-DMO Standard Instruments
AT15-59
AT15-44
service
Deployment Activity
Pacific Ocean off Costa Rica
Pacific, off Costa Rica
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Short-term colonization processes at Costa Rica methane seeps
https://osprey.bco-dmo.org/project/2185
Short-term colonization processes at Costa Rica methane seeps
<p>This RAPID project will conduct 5 submersible or ROV dives to collect a series of colonization experiments deployed in March 2009 on Mound 12 off Costa Rica (997 m). These experiments were deployed opportunistically, and to optimize the information that could be obtained, the PIs needed to recover them within a 12 month time frame. Early colonization of rock, wood, shell and tube substrates will be studied. The microbes, foraminiferans and metazoans present after 6-12 mo will be compared to those colonizing similar experiments to be deployed at Hydrate Ridge, where seeps occur within an oxygen minimum zone. The overall project goal is to integrate physical, geological, chemical and biological data to develop a holistic view of the influence of seep-generated carbonate hard-ground ecosystems on margins.</p>
<p>The objectives of the research are to (a) Compare colonizers at seeps off Costa Rica and Hydrate Ridge to assess the importance of different oxygen regimes in the development of anaerobic methane oxidation, sulfide oxiders and other microbial metabolisms on hard substrates, and to evaluate their roles in driving protozoan and metazoan succession at methane seeps. (b) Deploy a suite of biotic and abiotic substrates to distinguish the specific roles of carbonate substrate from those of other hard substrates (wood, clam and mussel shells, worm tubes) available. (c) Explore the similarity of vent and seep colonization processes by comparing colonization at the Costa Rica seeps, where vent species are common, to the Hydrate Ridge seeps, where they are not. (d) Determine whether there are diagnosable biogeographic isotope or other biomarker signatures from newly recruited Costa Rica microbial, foraminiferal and animal populations at active vs. inactive seeps, and whether these differ from those at Hydrate Ridge.</p>
<p>This research will involve international participation from Costa Rican scientists at the Univ. of Costa Rica. </p>
Seep Carbonate Ecology CROCKS II
largerWorkCitation
project
eng; USA
oceans
Pacific Ocean off Costa Rica; Pacific, off Costa Rica
2012-01-19
Costa Rica seafloor methane seeps 8 deg 55 N 84 deg 18 W depth 990m
0
BCO-DMO catalogue of parameters from Alvin dive log from off Costa Rica from R/V Atlantis AT15-59, AT15-44 in the Pacific Ocean off Costa Rica, Pacific, off Costa Rica from 2009-2010 (Seep Carbonate Ecology CROCKS II project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/26746.rdf
Name: dive
Units: integer
Description: <p>Alvin dive number</p>
http://lod.bco-dmo.org/id/dataset-parameter/26747.rdf
Name: station
Units: text
Description: <p>location of sample</p>
http://lod.bco-dmo.org/id/dataset-parameter/26748.rdf
Name: lat
Units: decimal degrees
Description: <p>latitude; North is positive</p>
http://lod.bco-dmo.org/id/dataset-parameter/26749.rdf
Name: lon
Units: decimal degrees
Description: <p>longitude; East is positive</p>
http://lod.bco-dmo.org/id/dataset-parameter/26750.rdf
Name: depth_w
Units: meters
Description: <p>water depth</p>
http://lod.bco-dmo.org/id/dataset-parameter/26751.rdf
Name: location
Units: text
Description: <p>location at site</p>
http://lod.bco-dmo.org/id/dataset-parameter/26752.rdf
Name: habitat
Units: text
Description: <p>bottom habitat</p>
http://lod.bco-dmo.org/id/dataset-parameter/26753.rdf
Name: seep_activity
Units: text
Description: <p>degree of seep activity</p>
http://lod.bco-dmo.org/id/dataset-parameter/26754.rdf
Name: sample_type
Units: text
Description: <p>type of sample</p>
http://lod.bco-dmo.org/id/dataset-parameter/26755.rdf
Name: replicate
Units: text
Description: <p>replicate information</p>
http://lod.bco-dmo.org/id/dataset-parameter/26756.rdf
Name: sample_id
Units: text
Description: <p>sample number or info</p>
http://lod.bco-dmo.org/id/dataset-parameter/26757.rdf
Name: photos
Units: text
Description: <p>whether photographs were taken or not</p>
http://lod.bco-dmo.org/id/dataset-parameter/26758.rdf
Name: comments
Units: text
Description: <p>comments</p>
http://lod.bco-dmo.org/id/dataset-parameter/26759.rdf
Name: fate
Units: text
Description: <p>processing of sample</p>
http://lod.bco-dmo.org/id/dataset-parameter/26879.rdf
Name: yrday_gmt
Units: 1 to 365
Description: <p>GMT day and decimal time, as 326.5 for the 326th day of the year, or November 22 at 1200 hours (noon). In the case of drifter data, year day may be continuous over a multi year period. No time in this dataset so no decimal is added to the yearday.</p>
http://lod.bco-dmo.org/id/dataset-parameter/26880.rdf
Name: year
Units: yyyy
Description: <p>year of sampling.</p>
http://lod.bco-dmo.org/id/dataset-parameter/26881.rdf
Name: month
Units: 1 to 12
Description: <p>month, GMT time.</p>
http://lod.bco-dmo.org/id/dataset-parameter/26882.rdf
Name: day
Units: 1 to 31
Description: <p>day of sampling, GMT</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
28765
https://datadocs.bco-dmo.org/file/oAAmBq1hPGAlr6/dive_log.csv
dive_log.csv
Primary data file for dataset ID 3603
download
https://osprey.bco-dmo.org/dataset/3603/data/download
download
onLine
dataset
<p>Equipment used: standard Alvin tubecores; Ocean Instruments multicorer; Seabird CTD with O2 sensor.<br />
<br />
Where indicated, sediment samples from tube cores were sectioned vertically and preserved in buffered formaldehyde (standard procedures) or frozen at -80&ordm;C.<br />
<br />
Colonization substrates had macrofauna (&gt;0.3 mm) and meiofauna (&gt;0.42 microns) removed and preserved.&nbsp; Representative individuals were frozen for subsequent stable isotope analyses.</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Alvin tube core
Alvin tube core
PI Supplied Instrument Name: Alvin tube core Instrument Name: Alvin tube core Instrument Short Name:Tube Core Instrument Description: A plastic tube, about 40 cm (16 inches) long, is pushed into the sediment by Alvin's manipulator arm to collect a sediment core.
CTD Sea-Bird
CTD Sea-Bird
PI Supplied Instrument Name: CTD Sea-Bird PI Supplied Instrument Description:Seabird CTD with oxygen sensor. Instrument Name: CTD Sea-Bird Instrument Short Name:CTD Sea-Bird Instrument Description: A Conductivity, Temperature, Depth (CTD) sensor package from SeaBird Electronics. This instrument designation is used when specific make and model are not known or when a more specific term is not available in the BCO-DMO vocabulary. Refer to the dataset-specific metadata for more information about the specific CTD used. More information from: http://www.seabird.com/ Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/130/
Multi Corer
Multi Corer
PI Supplied Instrument Name: Multi Corer PI Supplied Instrument Description:Ocean Instruments multicorer Instrument Name: Multi Corer Instrument Short Name:Multi Corer Instrument Description: The Multi Corer is a benthic coring device used to collect multiple, simultaneous, undisturbed sediment/water samples from the seafloor. Multiple coring tubes with varying sampling capacity depending on tube dimensions are mounted in a frame designed to sample the deep ocean seafloor. For more information, see Barnett et al. (1984) in Oceanologica Acta, 7, pp. 399-408. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/51/
Cruise: AT15-59
AT15-59
R/V Atlantis
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantis
vessel
AT15-59
Lisa A. Levin
University of California-San Diego Scripps
Cruise: AT15-44
AT15-44
R/V Atlantis
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantis
vessel
AT15-44
Lisa A. Levin
University of California-San Diego Scripps
R/V Atlantis
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantis
vessel