http://lod.bco-dmo.org/id/dataset/3684
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2012-07-31
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Scientific sampling event logs from two cruises/trips at the Richard B Gump Research Station at Moorea LTER in 2010 and 2011 (MCR LTER and Coral DOM projects)
2014-01-02
publication
2014-01-02
revision
Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)
2019-08-29
publication
https://doi.org/10.1575/1912/bco-dmo.3684.2
Craig A. Carlson
University of California-Santa Barbara
principalInvestigator
Craig E. Nelson
University of Hawaiʻi at Mānoa
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Carlson, C., Nelson, C. (2014) Scientific sampling event logs from two cruises/trips at the Richard B Gump Research Station at Moorea LTER in 2010 and 2011 (MCR LTER and Coral DOM projects). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 2) Version Date 2014-01-02 [if applicable, indicate subset used]. doi:10.1575/1912/bco-dmo.3684.2 [access date]
Event log from MCR10-1 and MCR11-1 cruises/trips Dataset Description: <p>Log of events recorded during the MCR10-1 cruise/trip (the Coral DOM 2010 Research Campaign) and the MCR11-1 cruise/trip (the Coral DOM 2011 Research Campaign) at the Moorea Coral Reef LTER site.</p> Methods and Sampling: <p>In 2010, various boats, including the following, were used to sample from the research station: Gump Safe boat, boats 609, 509, and 389.</p>
<p><strong>2011 Experiments</strong> (codes in parenthesese correspond to 'project_code' column):<br />
Benthic Tent Incubations (TentI - TentV) - 48h Duration; Continuous: Oxygen, pH, Temp, Salinity; Daily: DOC, FCM, DNA, start-end POM.<br />
Niskin in situ incubations (NBE) - 24h Duration; Start-End DOC, FCM, DNA, DO...<br />
Release-Remineralization (RR) - 24h Exudation, 48h Remineralization (with and without Sand, Light and Dark): DOC, DO, FCM, DNA.<br />
Coral Damage (Sprout Soup) - 24h Exudation, 7 day incubation (daily water change + exudate spike).<br />
Big Pillow Experiments (BPE) - 24h Exudation, 48h incubation (metagenomic filtration at 48h, maintain for later DOC timepoints and FCM.<br />
Flow and Flux Surveys (FF)<br />
Porewater Sampling (PW)<br />
SandBag (SB) - Sand, Autoclaved Sand, incubated in offshore water in ~5L bags (unfiltered).</p>
<p><strong>2011 Methodology:</strong><br />
FCM - 1.5ml sample, 90 uL PFA (8% or 32% stocks).<br />
DOC - collected through 47mm combusted GF/F into acid-leached 60ml HDPE or combusted EPA.<br />
nutrients - collected through 47mm combusted GF/F into triple-rinsed HDPE scint vials.<br />
DNA - 500+ mL whole water collected onto Sterivex.<br />
Oxygen (NBE T0) - After sampling DOC, FCM, additional offsh. water to fill, optode measure, close with spill.<br />
Oxygen (NBE TF) - Before other samples, open niskin to laminar flow into BOD bottle, overfill 2X, DO meas.<br />
POC (NBE) - 500-1000 mL collected through 25mm combusted GF/F.<br />
POC (FF) - 4L collected through 25mm combusted GF/F.<br />
Chlorohpyll (FF) - 1L collected through 25mm combusted GF/F.<br />
Fluorescein - 60ml initial line flush, then 10ml syringe sampled emptied 15ml falcon frozen -20.</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-0927411 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=0927411
onGoing
Craig A. Carlson
University of California-Santa Barbara
(805) 893-2541
University of California Department of Ecology, Evolution and Marine Biology
Santa Barbara
CA
93106-6150
USA
craig_carlson@ucsb.edu
pointOfContact
Craig E. Nelson
University of Hawaiʻi at Mānoa
805-705-3497
Center for Microbial Oceanography: Research & Education Dept of Oceanography & UH Sea Grant
Honolulu
HI
96822
USA
cen@hawaii.edu
pointOfContact
asNeeded
Dataset Version: 2
Unknown
cruiseid
year
lat_lab
lon_lab
event
project_code
site_ID
activity
sample_desig
date_local
time_start_local
time_end_local
ISO_DateTime_start_UTC
si
comment
theme
None, User defined
cruise id
year
latitude
longitude
event
No BCO-DMO term
Site_ID
activity and comments
sample description
date_local
time_start_local
time_local
ISO_DateTime_UTC
recorder
comments
featureType
BCO-DMO Standard Parameters
MCR10-1
MCR11-1
service
Deployment Activity
North Shore Moorea, French Polynesia
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Long Term Ecological Research network
http://www.lternet.edu/
Long Term Ecological Research network
adapted from http://www.lternet.edu/
The National Science Foundation established the LTER program in 1980 to support research on long-term ecological phenomena in the United States. The Long Term Ecological Research (LTER) Network is a collaborative effort involving more than 1800 scientists and students investigating ecological processes over long temporal and broad spatial scales. The LTER Network promotes synthesis and comparative research across sites and ecosystems and among other related national and international research programs. The LTER research sites represent diverse ecosystems with emphasis on different research themes, and cross-site communication, network publications, and research-planning activities are coordinated through the LTER Network Office.
2017 LTER research site map obtained from https://lternet.edu/site/lter-network/
LTER
largerWorkCitation
program
Emerging Topics in Biogeochemical Cycles
http://www.nsf.gov/pubs/2007/nsf07049/nsf07049.jsp
Emerging Topics in Biogeochemical Cycles
The original call for proposals for Emerging Topics in Biogeochemical Cycles (ETBC) was issued in September 2007 by the US NSF Directorate for Geosciences (NSF 07-049).
The Geosciences Directorate (GEO) is substantially augmenting our past funding sources to explicitly support emerging areas of interdisciplinary research. We seek to foster transformational advances in our quantitative or mechanistic understanding of biogeochemical cycles that integrate physical-chemical-biological processes over the range of temporal and/or spatial scales in Earth’s environments. We encourage submission of proposals that address emerging topics in biogeochemical cycles, the water cycle or their coupling, across the interfaces of atmosphere, land, and oceans. Proposals must cross the disciplinary boundaries of two or more divisions in Geosciences (e.g. ATM, EAR, OCE) or of at least one division in Geosciences and a division in another NSF directorate.
Although funding programmatic disciplines continues to provide a robust and adaptable framework to build our understanding of the geosciences and the earth as a system, there are classes of emerging and challenging problems that require integration of concepts and observations across diverse fields. Our goal is to enhance such integration. Successful proposals need to develop intellectual excitement in the participating disciplinary communities. Also encouraged are proposals that have broader educational, diversity, societal, or infrastructure impacts that capitalize on this interdisciplinary opportunity.
ETBC
largerWorkCitation
program
Moorea Coral Reef Long-Term Ecological Research site
http://mcr.lternet.edu/
Moorea Coral Reef Long-Term Ecological Research site
<p><strong>NSF Award Abstract: </strong></p>
<p>Coral reefs provide important benefits to society, from food to exceptional biodiversity to shoreline protection and recreation, but they are threatened by natural perturbations and human activities, including those causing global-scale changes. These pressures increasingly are causing coral reefs to undergo large, often abrupt, ecological changes where corals are being replaced by seaweeds or other undesirable organisms. Historically, the major agent of disturbance to coral reefs has been powerful storms, but in recent decades, episodes of mass coral bleaching from marine heat waves have become more frequent and severe as the temperature of ocean surface waters continues to rise. Coral reefs are further stressed by local human activities that cause nutrient pollution and deplete herbivorous fishes that control growth of seaweeds. Studying how coral reefs respond to these two types of disturbance under different levels of nutrient pollution and fishing provides essential information on what affects the ability of coral reefs to buffer environmental change and disturbances without collapsing to a persistent, degraded condition. The fundamental goals of the Moorea Coral Reef Long Term Ecological Research program (MCR LTER) are to understand how and why coral reefs change over time, to assess the consequences of these changes, and to contribute scientific knowledge needed to sustain coral reef ecosystems and the important societal services they provide. This research improves understanding and management of coral reefs, which benefits all groups concerned with the welfare of this ecologically, economically and culturally important ecosystem. In addition to academic communities, scientific findings are communicated to interested individuals, non-governmental organizations, island communities and governmental entities. These findings also are integrated into K-12, undergraduate, graduate and public education activities through a multi-pronged program that includes inquiry-based curricula, interactive and media-based public education programs, and internet-based resources. MCR?s research, training, education and outreach efforts all emphasize broadening participation in STEM fields and strengthening STEM literacy.</p>
<p>New research activities build on MCR LTER?s powerful foundation of long-term observations and broad ecological understanding of oceanic coral reefs to address the following core issues: How is the changing disturbance regime (recurrent heat waves in addition to cyclonic storms) altering the resilience of coral reefs, and what are the ecological consequences of altered resilience? Research activities are organized around a unifying framework that explicitly addresses how reef communities are affected by the nature and history of coral-killing disturbances, and how those responses to disturbance are influenced by the pattern of local human stressors. New studies answer three focal questions: (1) How do different disturbance types, which either remove (storms) or retain (heat waves) dead coral skeletons, affect community dynamics, abrupt changes in ecological state, and resilience? (2) How do local stressors interact with new disturbance regimes to create spatial heterogeneity in community dynamics, ecosystem processes, and spatial resilience? And (3) What attributes of coral and coral reef communities influence their capacity to remain resilient under current and future environmental conditions? These questions provide an unparalleled opportunity to test hypotheses and advance theory regarding ecological resilience and the causes and consequences of abrupt ecological change, which is broadly relevant across aquatic and terrestrial ecosystems.</p>
<p>This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.</p>
<p><strong>From <a href="http://www.lternet.edu/sites/mcr/">http://www.lternet.edu/sites/mcr/</a> and <a href="http://mcr.lternet.edu/">http://mcr.lternet.edu/</a></strong>:<br />
The Moorea Coral Reef LTER site encompasses the coral reef complex that surrounds the island of Moorea, French Polynesia (17°30'S, 149°50'W). Moorea is a small, triangular volcanic island 20 km west of Tahiti in the Society Islands of French Polynesia. An offshore barrier reef forms a system of shallow (mean depth ~ 5-7 m), narrow (~0.8-1.5 km wide) lagoons around the 60 km perimeter of Moorea. All major coral reef types (e.g., fringing reef, lagoon patch reefs, back reef, barrier reef and fore reef) are present and accessible by small boat.</p>
<p>The MCR LTER was established in 2004 by the US National Science Foundation (NSF) and is a partnership between the University of California Santa Barbara and California State University, Northridge. MCR researchers include marine scientists from the UC Santa Barbara, CSU Northridge, UC Davis, UC Santa Cruz, UC San Diego, CSU San Marcos, Duke University and the University of Hawaii. Field operations are conducted from the UC Berkeley Richard B. Gump South Pacific Research Station on the island of Moorea, French Polynesia.</p>
<p><strong>MCR LTER Data:</strong> The Moorea Coral Reef (MCR) LTER data are managed by and available directly from the MCR project data site URL shown above. The datasets listed below were collected at or near the MCR LTER sampling locations, and funded by NSF OCE as ancillary projects related to the MCR LTER core research themes.</p>
<p><strong>This project is supported by continuing grants with slight name variations:</strong></p>
<ul>
<li>LTER: Long-Term Dynamics of a Coral Reef Ecosystem</li>
<li>LTER: MCR II - Long-Term Dynamics of a Coral Reef Ecosystem</li>
<li>LTER: MCR IIB: Long-Term Dynamics of a Coral Reef Ecosystem</li>
<li>LTER: MCR III: Long-Term Dynamics of a Coral Reef Ecosystem</li>
<li>LTER: MCR IV: Long-Term Dynamics of a Coral Reef Ecosystem</li>
</ul>
MCR LTER
largerWorkCitation
project
The coupling between DOM, algae, and microbes on coral reef platforms
https://osprey.bco-dmo.org/project/2223
The coupling between DOM, algae, and microbes on coral reef platforms
<p>This project is part of the ETBC (Emerging Topics in Biogeochemical Cycles) program.</p>
<p><strong>From NSF award proposal:</strong><br />
The proposed research will investigate the coupling between primary producers and the utilization of dissolved organic matter (DOM) by marine heterotrophic microbes on coral reefs. Previous metagenomic studies of the microbial communities associated with near-pristine and degraded coral reefs demonstrated a shift from a microbial food web similar to the open ocean (<em>Prochlorococcus</em> spp. and SAR11-like bacteria) to a community dominated by "super-heterotrophs", most closely related to known pathogens like<em> E. coli</em>, <em>Staphylococcus</em> spp., <em>Streptococcus</em> spp., <em>Enterobacter</em> spp. and <em>Vibrio</em> spp. This shift is associated with a decline in coral cover and an increase in coral disease prevalence. Our previous research has also shown that dissolved organic carbon (DOC) concentrations are lower on coral reef platforms compared to measurements of offshore waters (60-80 µM). On degraded reefs, we have observed DOC measurements as low as 30 - 40 µM, a value similar to concentrations observed in the deep Pacific Ocean. The observation of low DOC measurements on degraded reefs is decoupled from the high abundance of macroalgae, which one might expect would raise levels of DOC through the release of photosynthate into the water column.</p>
<p>The data generated from the proposed research are key to understanding the microbial, chemical, and ecological dynamics on today’s coral reefs. The proposed research plan will consist of five inter-related objectives that will use a combination of field surveys, molecular characterization (microbes and DOM) and experimental approaches to assess the overall hypothesis. We propose to use a combination of archived samples from previous reef expeditions as well as conduct two field visits to reefs in French Polynesia (Moorea) and the Line Islands (Kiritimati) for focused sampling and experimentation. The biogeochemistry, local physical oceanography, and detailed reef ecology has been well characterized and continues to be monitored as part of the MCR-LTER program at Moorea. This environmental context will be useful in interpreting our experimental and field results at Moorea. We will also compare two field sites, Moorea and Kiritimati to ensure that our results are not specific to one region.</p>
Coral DOM
largerWorkCitation
project
eng; USA
oceans
North Shore Moorea, French Polynesia
-149.826
-149.826
-17.4907
-17.4907
2010-09-06
2011-09-20
From projects that focused on the following 2 locations: 1. Island of Moorea, French Polynesia 2. Moorea, French Polynesia
0
BCO-DMO catalogue of parameters from Scientific sampling event logs from two cruises/trips at the Richard B Gump Research Station at Moorea LTER in 2010 and 2011 (MCR LTER and Coral DOM projects)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/473842.rdf
Name: cruiseid
Units: dimensionless
Description: <p>Name of the research campaign/cruise/deployment.</p>
http://lod.bco-dmo.org/id/dataset-parameter/473843.rdf
Name: year
Units: unitless
Description: <p>4-digit year in YYYY format.</p>
http://lod.bco-dmo.org/id/dataset-parameter/473844.rdf
Name: lat_lab
Units: decimal degrees
Description: <p>Latitude of the research station; negative indicates south.</p>
http://lod.bco-dmo.org/id/dataset-parameter/473845.rdf
Name: lon_lab
Units: decimal degrees
Description: <p>Longitude of the research station; negative indicates west.</p>
http://lod.bco-dmo.org/id/dataset-parameter/473846.rdf
Name: event
Units: dimensionless
Description: <p>Unique event ID number.</p>
http://lod.bco-dmo.org/id/dataset-parameter/473847.rdf
Name: project_code
Units: dimensionless
Description: <p>Code that identifies the project/experiment. (2011 data only). Codes:<br />
TentI - TentVI = Benthic Tube Incubations;<br />
RR = Release-Remineralization;<br />
SS = Coral Damage (Sprout Soup);<br />
NBE = Niskin in situ Incubations;<br />
FF = Flow and Flux Surveys;<br />
PW = Porewater Sampling;<br />
SB = SandBag;<br />
BPE = Big Pillow Experiments.</p>
http://lod.bco-dmo.org/id/dataset-parameter/473848.rdf
Name: site_ID
Units: dimensionless
Description: <p>Area of operation.</p>
http://lod.bco-dmo.org/id/dataset-parameter/473849.rdf
Name: activity
Units: dimensionless
Description: <p>Type of sampling activity or experiment.</p>
http://lod.bco-dmo.org/id/dataset-parameter/473850.rdf
Name: sample_desig
Units: dimensionless
Description: <p>Sample number designator. (2010 data only.)</p>
http://lod.bco-dmo.org/id/dataset-parameter/473854.rdf
Name: date_local
Units: mm/dd/yy
Description: <p>Date in local time.</p>
http://lod.bco-dmo.org/id/dataset-parameter/473855.rdf
Name: time_start_local
Units: HHMM
Description: <p>Time at start of event; local to French Polynesia (Papeete Tahiti; UTC/GMT -10 hours; Time Zone Code TAHT).</p>
http://lod.bco-dmo.org/id/dataset-parameter/473856.rdf
Name: time_end_local
Units: HHMM
Description: <p>Time at end of event; local to French Polynesia (Papeete Tahiti; UTC/GMT -10 hours; Time Zone Code TAHT). (2011 data only.)</p>
http://lod.bco-dmo.org/id/dataset-parameter/473857.rdf
Name: ISO_DateTime_start_UTC
Units: YYYY-mm-ddTHH:MM:SS.ss
Description: <p>Date and time (UTC) formatted to ISO8601 standard. T indicates start of time string; Z indicates UTC.</p>
http://lod.bco-dmo.org/id/dataset-parameter/473858.rdf
Name: si
Units: dimensionless
Description: <p>Initials of scientific investigator.</p>
http://lod.bco-dmo.org/id/dataset-parameter/473859.rdf
Name: comment
Units: dimensionless
Description: <p>Description of samples collected and other free-text comments about the event.</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
32841
https://darchive.mblwhoilibrary.org/bitstream/1912/24481/1/dataset-3684_event-logs-mcr10-1-and-mcr11-1__v2.tsv
download
https://doi.org/10.1575/1912/bco-dmo.3684.2
download
onLine
dataset
<p>In 2010, various boats, including the following, were used to sample from the research station: Gump Safe boat, boats 609, 509, and 389.</p>
<p><strong>2011 Experiments</strong> (codes in parenthesese correspond to 'project_code' column):<br />
Benthic Tent Incubations (TentI - TentV) - 48h Duration; Continuous: Oxygen, pH, Temp, Salinity; Daily: DOC, FCM, DNA, start-end POM.<br />
Niskin in situ incubations (NBE) - 24h Duration; Start-End DOC, FCM, DNA, DO...<br />
Release-Remineralization (RR) - 24h Exudation, 48h Remineralization (with and without Sand, Light and Dark): DOC, DO, FCM, DNA.<br />
Coral Damage (Sprout Soup) - 24h Exudation, 7 day incubation (daily water change + exudate spike).<br />
Big Pillow Experiments (BPE) - 24h Exudation, 48h incubation (metagenomic filtration at 48h, maintain for later DOC timepoints and FCM.<br />
Flow and Flux Surveys (FF)<br />
Porewater Sampling (PW)<br />
SandBag (SB) - Sand, Autoclaved Sand, incubated in offshore water in ~5L bags (unfiltered).</p>
<p><strong>2011 Methodology:</strong><br />
FCM - 1.5ml sample, 90 uL PFA (8% or 32% stocks).<br />
DOC - collected through 47mm combusted GF/F into acid-leached 60ml HDPE or combusted EPA.<br />
nutrients - collected through 47mm combusted GF/F into triple-rinsed HDPE scint vials.<br />
DNA - 500+ mL whole water collected onto Sterivex.<br />
Oxygen (NBE T0) - After sampling DOC, FCM, additional offsh. water to fill, optode measure, close with spill.<br />
Oxygen (NBE TF) - Before other samples, open niskin to laminar flow into BOD bottle, overfill 2X, DO meas.<br />
POC (NBE) - 500-1000 mL collected through 25mm combusted GF/F.<br />
POC (FF) - 4L collected through 25mm combusted GF/F.<br />
Chlorohpyll (FF) - 1L collected through 25mm combusted GF/F.<br />
Fluorescein - 60ml initial line flush, then 10ml syringe sampled emptied 15ml falcon frozen -20.</p>
Specified by the Principal Investigator(s)
<p>BCO-DMO made the following modifications:<br />
- changed parameter names to conform to BCO-DMO conventions;<br />
- replaced blanks and 'NA' with 'nd' to indicate no data;<br />
- calculated date/time in GMT format from the local dates and times provided (local to French Polynesia (Papeete, Tahiti; UTC/GMT -10 hours; Time Zone Code TAHT));<br />
- columns originally named 'Samples Collected' and 'Comments' were merged into a single comment field;<br />
- 'et al.' used in si column when 3 or more people were listed.</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Deployment: MCR10-1
MCR10-1
Richard B Gump Research Station - Moorea LTER
Richard B Gump Research Station - Moorea LTER
island
MCR10-1
Craig A. Carlson
University of California-Santa Barbara
Deployment: MCR11-1
MCR11-1
Richard B Gump Research Station - Moorea LTER
Richard B Gump Research Station - Moorea LTER
island
MCR11-1
Craig A. Carlson
University of California-Santa Barbara
Richard B Gump Research Station - Moorea LTER
Richard B Gump Research Station - Moorea LTER
island