Video Plankton Recorder data (formatted with taxa displayed in single column); from R/V Columbus Iselin and R/V Endeavor cruises CI9407, EN259, EN262 in the Gulf of Maine and Georges Bank from 1994-1995

Website: https://www.bco-dmo.org/dataset/3685
Version: 2012-07-31

Project
» U.S. GLOBEC Georges Bank (GB)

Program
» U.S. GLOBal ocean ECosystems dynamics (U.S. GLOBEC)
ContributorsAffiliationRole
Ashjian, Carin J.Woods Hole Oceanographic Institution (WHOI)Principal Investigator
Allison, DickyWoods Hole Oceanographic Institution (WHOI BCO-DMO)BCO-DMO Data Manager
Rauch, ShannonWoods Hole Oceanographic Institution (WHOI BCO-DMO)BCO-DMO Data Manager


Dataset Description

This dataset includes ALL the abundance values, zero and non-zero.  Taxonomic groups are diplayed in the 'taxon' column, rather than in separate columns, with abundances in the 'abund_L' column. For the original presentation of the data, see VPR_ashjian_orig. For a version of the data with only non-zero data, see VPR_ashjian_nonzero. In the 'nonzero' dataset, values of 0 in the abund_L column (taxon abundance) have been removed.

Methodology
The following information was extracted from C.J. Ashjian et al., Deep- Sea Research II 48(2001) 245-282 . An in-depth discussion of the data and sampling methods can be found there.

The Video Plankton Recorder was towed at 2 m/s, collecting data from the surface to the bottom (towyo). The VPR was equipped with 2-4 cameras, temperature and conductivity probes, fluorometer and transmissometer. Environmental data was collected at 0.25 Hz (CI9407) or 0.5 Hz (EN259, EN262). Video images were recorded at 60 fields per second (fps).

Video tapes were analyzed for plankton abundances using a semi-automated method discussed in Davis, C.S. et al., Deep-Sea Research II 43 (1996) 1946-1970. In-focus images were extracted from the video tapes and identified by hand to particle type, taxon, or species. Plankton and particle observations were merged with environmental and navigational data by binning the observations for each category into the time intervals at which the environmental data were collected (again see above Davis citation). Concentrations were calculated utilizing the total volume (liters) imaged during that period. For less-abundant categories, usually only a single organism was observed during each time interval so that the resulting concentrations are close to presence or absence data rather than covering a range of values.


Methods & Sampling

The Video Plankton Recorder was towed at 2 m/s, collecting data from the surface to the bottom (towyo). The VPR was equipped with 2-4 cameras, temperature and conductivity probes, fluorometer and transmissometer. Environmental data was collected at 0.25 Hz (CI9407) or 0.5 Hz (EN259, EN262). Video images were recorded at 60 fields per second (fps).


Data Processing Description

Video tapes were analyzed for plankton abundances using a semi-automated method discussed in Davis, C.S. et al., Deep-Sea Research II 43 (1996) 1946-1970. In-focus images were extracted from the video tapes and identified by hand to particle type, taxon, or species. Plankton and particle observations were merged with environmental and navigational data by binning the observations for each category into the time intervals at which the environmental data were collected (again see above Davis citation). Concentrations were calculated utilizing the total volume (liters) imaged during that period. For less-abundant categories, usually only a single organism was observed during each time interval so that the resulting concentrations are close to presence or absence data rather than covering a range of values.

BCO-DMO re-formatted the data by converting taxonomic columns to rows. The original data display can be seen in the VPR_ashjian_orig dataset.


[ table of contents | back to top ]

Data Files

File
vpr_cashjian_read.csv
(Comma Separated Values (.csv), 370.26 MB)
MD5:e84f43da333c04bd20c60cead70a9f7e
Primary data file for dataset ID 3685

[ table of contents | back to top ]

Parameters

ParameterDescriptionUnits
cruiseid Cruise identification
year year GMT
yrday0_gmtyear day, Jan 1 = 0, GMT YYY.Y
month_gmt month, GMT
day_gmt day of tow, GMT
time_gmt hour and decimal minute of binned video image, GMT HHmm.m
lat latitude, negative = south decimal degrees
lon longitude, negative = west decimal degrees
press pressure, depth of data interval decibars
temp temperature degrees centigrade
sal salinity, derived using Neil Brown software PSU
sigma_t sigma_t, density kilograms/meter3
flvolt fluorescence volts
fluor fluorescence relative units
trans_v light transmission volts
dist_along_track distance along ship's track kilometers
taxonName of the taxonomic group. Hydroids = asexual hydroid phase of Cnidarians Other = other zooplankton not categorized Calanus = Calanus sp. but likely finmarchicus Phaeoproto = Phaeocystis spp. protocolonies Marinesnow = Particles of plankton Pseudocalanus = Pseudocalanus spp. Cope_uid = unidentified copepods Pseudow egg = Pseudocalanus with eggs Medusa_uid = unidentified medusa Algalmat = Collections of diatom chains Dino_Ceratium = Ceratium spp. Diat_Csocialis = Chaetoceros socialis Diat_Chaetoceros = Chaetoceros spp. Cyclopoid_uid = unidentified cyclopoid Unidentified = unidentified objects Centropages = Centropages spp. Oithona = Oithona spp. dimensionless
abund_LTaxon abundance (number per Liter). Note: 1 cubic meter = 1,000 L. number/Liter
brief_descBrief description of the type of cruise. dimensionless


[ table of contents | back to top ]

Instruments

Dataset-specific Instrument Name
Video Plankton Recorder
Generic Instrument Name
Video Plankton Recorder
Dataset-specific Description
Video Plankton Recorder, a towed vehicle. The Video Plankton Recorder was towed at 2 m/s, collecting data from the surface to the bottom (towyo). The VPR was equipped with 2-4 cameras, temperature and conductivity probes, fluorometer and transmissometer. Environmental data was collected at 0.25 Hz (CI9407) or 0.5 Hz (EN259, EN262). Video images were recorded at 60 fields per second (fps).
Generic Instrument Description
The Video Plankton Recorder (VPR) is a video-microscope system used for imaging plankton and other particulate matter in the size range from a few micrometers to several centimeters. The VPR is essentially an underwater microscope. It consists of four video cameras (with magnifying optics) synchronized at 60 fields per second (fps) to a red-filtered 80 W xenon strobe (pulse duration = 1 microsecond). The current lens on each camera can be adjusted to provide a field of view between 5 mm and 10 cm. Use of higher magnification lenses is currently being explored for viewing protozoans (less than 1 micrometer resolution). The four cameras are set for concentric viewing fields so that a range of up to four magnifications can be viewed simultaneously, allowing a wide size range of plankton to be sampled. Depth of field is adjusted by the lens aperture setting, and the volume sampled in each video field ranges from about 1 ml to 1 liter, depending on lens settings. The cameras have been configured for stereoscopic viewing as well.A strobe on the other arm illuminates the imaged volume and flashes 60 times per second, producing 60 images per second of the particles and plankton in the water. The images are then saved internally on a computer hard disk and later plotted. Deployment: Most commonly, the VPR is mounted in a frame and lowered into the water from the stern of the ship. Sometimes, a CTD also is mounted next to the VPR to collect depth, temperature, and salinity information at the same time as each video image. The instrument is lowered down through the water to a maximum depth of 350 meters to generate a profile of plankton/particle abundance and taxon group along with temperature and salinity. In addition to the towed configuration for mapping plankton distributions, it is possible to deploy the VPR in a fixed position (on a mooring) for viewing plankton swimming behaviors in two or three dimensions. The VPR instrument system has been used in both configurations, and deployment on ROVs has been proposed. This definition was taken from the WHOI Ocean Instruments Web site and from a US GLOBEC Newsletter.


[ table of contents | back to top ]

Deployments

CI9407

Website
Platform
R/V Columbus Iselin
Report
Start Date
1994-05-25
End Date
1994-06-16
Description
process zoology

EN259

Website
Platform
R/V Endeavor
Report
Start Date
1995-01-10
End Date
1995-01-22
Description
process zoology

EN262

Website
Platform
R/V Endeavor
Report
Start Date
1995-02-23
End Date
1995-03-10
Description
process zoology


[ table of contents | back to top ]

Project Information

U.S. GLOBEC Georges Bank (GB)


Coverage: Georges Bank, Gulf of Maine, Northwest Atlantic Ocean


The U.S. GLOBEC Georges Bank Program is a large multi- disciplinary multi-year oceanographic effort. The proximate goal is to understand the population dynamics of key species on the Bank - Cod, Haddock, and two species of zooplankton (Calanus finmarchicus and Pseudocalanus) - in terms of their coupling to the physical environment and in terms of their predators and prey. The ultimate goal is to be able to predict changes in the distribution and abundance of these species as a result of changes in their physical and biotic environment as well as to anticipate how their populations might respond to climate change.

The effort is substantial, requiring broad-scale surveys of the entire Bank, and process studies which focus both on the links between the target species and their physical environment, and the determination of fundamental aspects of these species' life history (birth rates, growth rates, death rates, etc).

Equally important are the modelling efforts that are ongoing which seek to provide realistic predictions of the flow field and which utilize the life history information to produce an integrated view of the dynamics of the populations.

The U.S. GLOBEC Georges Bank Executive Committee (EXCO) provides program leadership and effective communication with the funding agencies.



[ table of contents | back to top ]

Program Information

U.S. GLOBal ocean ECosystems dynamics (U.S. GLOBEC)


Coverage: Global


U.S. GLOBEC (GLOBal ocean ECosystems dynamics) is a research program organized by oceanographers and fisheries scientists to address the question of how global climate change may affect the abundance and production of animals in the sea.

The U.S. GLOBEC Program currently had major research efforts underway in the Georges Bank / Northwest Atlantic Region, and the Northeast Pacific (with components in the California Current and in the Coastal Gulf of Alaska). U.S. GLOBEC was a major contributor to International GLOBEC efforts in the Southern Ocean and Western Antarctic Peninsula (WAP).



[ table of contents | back to top ]

Funding

Funding SourceAward
National Science Foundation (NSF)
National Oceanic and Atmospheric Administration (NOAA)

[ table of contents | back to top ]