http://lod.bco-dmo.org/id/dataset/3721
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2012-09-14
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Fish larvae growth rates and related data collected from BONGO nets from the R/V Endeavor, R/V Albatross IV, EN265, AL9605, EN282 cruises in the Gulf of Maine and Georges Bank from 1995-1999 (GB project)
2012-09-14
publication
2012-09-14
revision
BCO-DMO Linked Data URI
2012-09-14
creation
http://lod.bco-dmo.org/id/dataset/3721
Larry J. Buckley
University of Rhode Island
principalInvestigator
Elaine Caldarone
Northeast Fisheries Science Center - Narragansett
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Buckley, L. J., Caldarone, E. (2012) Fish larvae growth rates and related data collected from BONGO nets from the R/V Endeavor, R/V Albatross IV, EN265, AL9605, EN282 cruises in the Gulf of Maine and Georges Bank from 1995-1999 (GB project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 2012-09-14) Version Date 2012-09-14 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/3721 [access date]
Georges Bank Fish Larvae, Growth Rates, Protein Content and Otolith Data Collected from BONGO Nets, 1995-1999. Dataset Description: <p>Principle objectives of the US GLOBEC Georges Bank Program were to study the composition of the larval fish community on Georges Bank, to define larval fish distribution across the Bank and within the water column, to determine those factors which influence their vertical distribution, and to determine bank-wide versus &quot;Patch-Study&quot; mortality and growth rates.&nbsp; Emphasis is on Atlantic cod <span class="st"> (Gadus morhua) </span>and haddock <span class="st">(Melanogrammus aeglefinus)</span> larvae along with their predators and prey.&nbsp; This study also includes larval distribution and abudance, analysis of feeding habits, and age and growth determination.&nbsp; These objectives were implemented through the use of bongo nets and MOCNESS tows to make the animal collections.</p> Methods and Sampling: <p>GLOBEC Fish Larvae were collected by Bongo nets.&nbsp; In some cruises nets were equiped with digital flow meters suspended in the mouth of the net and conductivity/temperature/depth measuring packages attached above the bongo.</p>
Funding provided by National Science Foundation (NSF) Award Number: unknown GB NSF
Funding provided by National Oceanic and Atmospheric Administration (NOAA) Award Number: unknown GB NOAA
completed
Larry J. Buckley
University of Rhode Island
401-874-6671
South Ferry Road
Narragansett
RI
02882-1197
USA
lbuckley@gso.uri.edu
pointOfContact
Elaine Caldarone
Northeast Fisheries Science Center - Narragansett
401-782-3326
28 Tarzwell Drive
Narragansett
RI
02882
USA
elaine.caldarone@noaa.gov
pointOfContact
asNeeded
Dataset Version: 2012-09-14
Unknown
cruise_id
year
brief_desc
station
lat
lon
day_local
month_local
time_local
length_day
temp_avg
sal_avg
sigma_t_avg
depth_w
depth_tow_max
sample
length
common_name
size_class
prot_total
RNA
DNA
rings
sagitta_diam
sagitta_chk_diam
lapillus_diam
growth
RNA_DNA
prot_predicted
yrday0_local
Bongo Net
CTD Sea-Bird SEACAT 19
theme
None, User defined
Cruise identfier
year
brief description
station
latitude
longitude
day_local
month_local
time_local
length_day
water temperature at measurement depth
salinity
sigma-t
depth_w
depth_tow_max
sample identification
length
common_name
No BCO-DMO term
yrday0_local
featureType
BCO-DMO Standard Parameters
Bongo Net
CTD Sea-Bird SEACAT 19
instrument
BCO-DMO Standard Instruments
EN265
AL9605
EN282
service
Deployment Activity
Gulf of Maine and Georges Bank
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
U.S. GLOBal ocean ECosystems dynamics
http://www.usglobec.org/
U.S. GLOBal ocean ECosystems dynamics
U.S. GLOBEC (GLOBal ocean ECosystems dynamics) is a research program organized by oceanographers and fisheries scientists to address the question of how global climate change may affect the abundance and production of animals in the sea.
The U.S. GLOBEC Program currently had major research efforts underway in the Georges Bank / Northwest Atlantic Region, and the Northeast Pacific (with components in the California Current and in the Coastal Gulf of Alaska). U.S. GLOBEC was a major contributor to International GLOBEC efforts in the Southern Ocean and Western Antarctic Peninsula (WAP).
U.S. GLOBEC
largerWorkCitation
program
U.S. GLOBEC Georges Bank
http://globec.whoi.edu/globec_program.html
U.S. GLOBEC Georges Bank
<p>The U.S. GLOBEC <a href="http://globec.whoi.edu/globec-dir/about_georges_bank.html">Georges Bank</a> Program is a large multi- disciplinary multi-year oceanographic effort. The proximate goal is to understand the population dynamics of key species on the Bank - Cod, <a href="http://globec.whoi.edu/images/haddock103.07.gif">Haddock</a>, and two species of zooplankton (<a href="http://globec.whoi.edu/images/calanus-finmarchicus.html"><em>Calanus finmarchicus</em></a> and <a href="http://globec.whoi.edu/images/pseudocalanus.html"><em>Pseudocalanus</em></a>) - in terms of their coupling to the physical environment and in terms of their <a href="http://globec.whoi.edu/images/targetpp.gif">predators and prey</a>. The ultimate goal is to be able to predict changes in the distribution and abundance of these species as a result of changes in their physical and biotic environment as well as to anticipate how their populations might respond to climate change.</p>
<p>The effort is substantial, requiring broad-scale surveys of the entire Bank, and process studies which focus both on the links between the target species and their physical environment, and the determination of fundamental aspects of these species' life history (birth rates, growth rates, death rates, etc).</p>
<p>Equally important are the modelling efforts that are ongoing which seek to provide realistic predictions of the flow field and which utilize the life history information to produce an integrated view of the dynamics of the populations.</p>
<p>The U.S. GLOBEC Georges Bank <a href="http://globec.whoi.edu/globec-dir/EXCO.html">Executive Committee (EXCO)</a> provides program leadership and effective communication with the funding agencies.</p>
GB
largerWorkCitation
project
eng; USA
oceans
Gulf of Maine and Georges Bank
2012-09-14
Georges Bank, Gulf of Maine, Northwest Atlantic Ocean
0
BCO-DMO catalogue of parameters from Fish larvae growth rates and related data collected from BONGO nets from the R/V Endeavor, R/V Albatross IV, EN265, AL9605, EN282 cruises in the Gulf of Maine and Georges Bank from 1995-1999 (GB project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/29602.rdf
Name: cruise_id
Units: dimensionless
Description: <p>Cruise Id, e.g., AL9306 represents the R/V Albatross cruise 9306</p>
http://lod.bco-dmo.org/id/dataset-parameter/29603.rdf
Name: year
Units: unknown
Description: <p>Four digit year.</p>
http://lod.bco-dmo.org/id/dataset-parameter/29604.rdf
Name: brief_desc
Units: dimensionless
Description: <p>Brief description, open-ended and specific to dataset.</p>
http://lod.bco-dmo.org/id/dataset-parameter/29605.rdf
Name: station
Units: dimensionless
Description: <p>Station number, submitted by PI as tow.</p>
http://lod.bco-dmo.org/id/dataset-parameter/29606.rdf
Name: lat
Units: decimal degrees
Description: <p>Latitude in decimal degrees.</p>
http://lod.bco-dmo.org/id/dataset-parameter/29607.rdf
Name: lon
Units: decimal degrees
Description: <p>Longitude in decimal degrees where negative values denote Westerly postitions.</p>
http://lod.bco-dmo.org/id/dataset-parameter/29608.rdf
Name: day_local
Units: dimensionless
Description: <p>Day of month in local time.</p>
http://lod.bco-dmo.org/id/dataset-parameter/29609.rdf
Name: month_local
Units: dimensionless
Description: <p>Month of year in local time.</p>
http://lod.bco-dmo.org/id/dataset-parameter/29610.rdf
Name: time_local
Units: hhmm
Description: <p>Local time of observation or tow, originally reported as EDST (Eastern Daylight Savings Time).</p>
http://lod.bco-dmo.org/id/dataset-parameter/29611.rdf
Name: length_day
Units: decimal hours
Description: <p>Number of hours between civil sunrise and civil sunset, originally reported as day_length.</p>
http://lod.bco-dmo.org/id/dataset-parameter/29612.rdf
Name: temp_avg
Units: Degrees celsius
Description: <p>Average temperature, as observed by a CTD unit, "primary sensor", ITS 68 or 90 scale, reported in degrees C. For BONGO: average of measurements recorded from 60m to surface.</p>
http://lod.bco-dmo.org/id/dataset-parameter/29613.rdf
Name: sal_avg
Units: dimensionless
Description: <p>Average salinity, calculated from the CTD "primary sensors" of conductivity and temperature, Practical Salinity Scale, dimensionless. For BONGO: average of measurements recorded from 60m to surface.</p>
http://lod.bco-dmo.org/id/dataset-parameter/29614.rdf
Name: sigma_t_avg
Units: kg/m^3 - 1000
Description: <p>Average sigma-t density, in kg/m<sup>3</sup> - 1000. For BONGO: average of measurements recorded from 60m to surface.</p>
http://lod.bco-dmo.org/id/dataset-parameter/29615.rdf
Name: depth_w
Units: meters
Description: <p>Water depth in meters.</p>
http://lod.bco-dmo.org/id/dataset-parameter/29616.rdf
Name: depth_tow_max
Units: meters
Description: <p>Maximum depth of a towed instrument.</p>
http://lod.bco-dmo.org/id/dataset-parameter/29617.rdf
Name: sample
Units: dimensionless
Description: <p>Unique identifier for obtained samples.</p>
http://lod.bco-dmo.org/id/dataset-parameter/29618.rdf
Name: length
Units: mm
Description: <p>Length of dead larval specimen, originally reported as larva_len.</p>
http://lod.bco-dmo.org/id/dataset-parameter/29619.rdf
Name: common_name
Units: dimensionless
Description: <p>Common name of sample, originally reported as species. Cod = Atlantic cod (Gadus morhua) and haddock is Melanogrammus aeglefinus.</p>
http://lod.bco-dmo.org/id/dataset-parameter/29620.rdf
Name: size_class
Units: dimensionless
Description: <p>Larval size groupings (classes), based on actual or predicted protein content of a larva. If pro <= 50 micrograms then size_class=1. If 50 < pro <= 193 then size_class=2. If 193 < pro <= 1200 then size_class=3. If pro > 1200 then size_class=4.</p>
http://lod.bco-dmo.org/id/dataset-parameter/29621.rdf
Name: prot_total
Units: micrograms
Description: <p>Total amount of protein in a larva.</p>
http://lod.bco-dmo.org/id/dataset-parameter/29622.rdf
Name: RNA
Units: micrograms
Description: <p>Total amount of RNA in a larva.</p>
http://lod.bco-dmo.org/id/dataset-parameter/29623.rdf
Name: DNA
Units: micrograms
Description: <p>Total amount of DNA in a larva.</p>
http://lod.bco-dmo.org/id/dataset-parameter/29624.rdf
Name: rings
Units: dimensionless
Description: <p>Total number of visible rings on an otolith, beginning at the hatch check or nucleus.</p>
http://lod.bco-dmo.org/id/dataset-parameter/29625.rdf
Name: sagitta_diam
Units: microns
Description: <p>Total diameter of sagitta otolith as measured with microscope micrometer; originally reported as sag_diam.</p>
http://lod.bco-dmo.org/id/dataset-parameter/29626.rdf
Name: sagitta_chk_diam
Units: microns
Description: <p>Diameter of sagitta otolith up to the hatch check (nucleus), measured with microscope micrometer; originally reported as sag_chk_diam.</p>
http://lod.bco-dmo.org/id/dataset-parameter/29627.rdf
Name: lapillus_diam
Units: microns
Description: <p>Total diameter of lapillus otolith, measured with microscope micrometer; originally reported as lap_diam.</p>
http://lod.bco-dmo.org/id/dataset-parameter/29628.rdf
Name: growth
Units: G per day
Description: <p>Instantaneous protein-specific growth rate (G per day) estimated from G = -0.147 + 0.009(avg_temp)+ 0.045(sRD), where sRD is the standardized ratio of RNA to DNA (reported in the data as RNA_DNA). Equation had been validated for cod and haddock larvae with protein content <=1200 micrograms.</p>
http://lod.bco-dmo.org/id/dataset-parameter/29629.rdf
Name: RNA_DNA
Units: dimensionless
Description: <p>The ratio of RNA to DNA standardized to a DNA/RNA standard curve slope ratio of 2.43; originally reported as srd.</p>
http://lod.bco-dmo.org/id/dataset-parameter/29630.rdf
Name: prot_predicted
Units: micrograms
Description: <p>Predicted total amount of protein in larvae missing protein data. For cod, predicted protein = (20.67*DNA) + 2.91. For haddock, predicted protein = (20.01*DNA) - 3.22. This parameters was originally reported as predict_pro.</p>
http://lod.bco-dmo.org/id/dataset-parameter/29631.rdf
Name: yrday0_local
Units: dimensionless
Description: <p>Day of year at local time, where Jan1 is day zero.</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
176516
https://datadocs.bco-dmo.org/file/8XXgy4AsPLlmXJ/fishlarvae_Bon_bss.csv
fishlarvae_Bon_bss.csv
Primary data file for dataset ID 3721
download
https://osprey.bco-dmo.org/dataset/3721/data/download
download
onLine
dataset
<p>GLOBEC Fish Larvae were collected by Bongo nets.&nbsp; In some cruises nets were equiped with digital flow meters suspended in the mouth of the net and conductivity/temperature/depth measuring packages attached above the bongo.</p>
Specified by the Principal Investigator(s)
<p><b>BCO-DMO Processing Notes:</b></p>
<div>- Original data file was edited in excel to add BCO-DMO convention header line, cruise and PI comment lines.&nbsp; <br />
<br />
- Because the original file:&nbsp; &ldquo;Buckley data for Georges Back GLOBEC website 8-6-2012.xls&rdquo; contained both Bongo and MOCNESS data, it was subsequently split into three separate data files based on gear and cruise type.&nbsp; These datasets are served separately:</div>
<ul>
<li>fishlarvae_M1 contains data from MOCNESS tows</li>
<li>fishlarvae_Bon_pro contains Bongo data from process cruises only</li>
<li>fishlarvae_Bon_bss contains Bongo data from broadscale cruises only</li>
</ul>
<p>Additional edits to this dataset, fishlarvae_Bon_bss:</p>
<p>-Stations with redundant entries were compared to the eventlog for the cruise and, where needed, lat/lon values were edited to a consistent precision for all positions taken at the same date/time.</p>
<p>- Two stations (6 and 36.5) in deployment EN282 in fishlarvae_Bon_bss contained identical information for station lat/lon, time, depth, avg sal, etc. but different day and yrday.&nbsp; When validated against other files' station information at the same location, time, etc. the day and yrday were corrected (fishlarvaeB and the eventlog for EN282 were used to validate):<br />
&nbsp;&nbsp;&nbsp;&nbsp; Station 6: day 12, yrday0 102&nbsp; was edited day 11, yrday0 101<br />
&nbsp;&nbsp;&nbsp;&nbsp; Station 36.5:&nbsp; day 19, yrday0 109&nbsp; was edited to day 18, yrday0 108</p>
<p>- Edited precision for sal_avg, temp_avg, sigma_t_avg to three decimals.</p>
<p>- Edited values of 99 for sal_avg, temp_avg, sigma_t_avg to &quot;nd&quot;.</p>
<p>- Parameter names were edited to adhere to BCO-DMO and GLOBEC convention, of particular note:</p>
<ul>
<li>Tow was edited at the request of the PI.&nbsp; Station and not station_std was used due to the fact that some stations correspond to GLOBEC GB standard station numbers.&nbsp; However, some do not.&nbsp; Within the GLOBEC context, standard station numbers were reserved for specific stations with exact locations where core survey measurements were carried out (please refer to http://globec.whoi.edu/globec-dir/protocol-bs-stations-1996.html).&nbsp; The DMO prefers to reserve the 'standard' label for the above defined stations.</li>
</ul>
<div>
<ul>
<li>EDST was edited to time_local</li>
<li>Species was edited to common_name because sometimes the animal was identified only to family or other taxonomic level.</li>
<li>Cruisetype was edited to brief_desc</li>
</ul>
</div>
<p>&nbsp;</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Bongo Net
Bongo Net
PI Supplied Instrument Name: Bongo Net PI Supplied Instrument Description:Bongo nets used during this study were simple paired plankton nets, towed double-obliquely through the water column. Net diameter was 61 cm with 333 and 505 micrometer mesh size. Nets used during sampling were not capable of discrete "known-depth" sampling. Instrument Name: Bongo Net Instrument Short Name:Bongo Net Instrument Description: A Bongo Net consists of paired plankton nets, typically with a 60 cm diameter mouth opening and varying mesh sizes, 10 to 1000 micron. The Bongo Frame was designed by the National Marine Fisheries Service for use in the MARMAP program. It consists of two cylindrical collars connected with a yoke so that replicate samples are collected at the same time. Variations in models are designed for either vertical hauls (OI-2500 = NMFS Pairovet-Style, MARMAP Bongo, CalVET) or both oblique and vertical hauls (Aquatic Research). The OI-1200 has an opening and closing mechanism that allows discrete "known-depth" sampling. This model is large enough to filter water at the rate of 47.5 m3/minute when towing at a speed of two knots. More information: Ocean Instruments, Aquatic Research, Sea-Gear Community Standard Description: http://vocab.nerc.ac.uk/collection/L22/current/NETT0009/
CTD Sea-Bird SEACAT 19
CTD Sea-Bird SEACAT 19
PI Supplied Instrument Name: CTD Sea-Bird SEACAT 19 PI Supplied Instrument Description:The CTD was attached on the wire above the Bongo frame. Instrument Name: CTD Sea-Bird SEACAT 19 Instrument Short Name:CTD SBE 19 Instrument Description: The Sea-Bird SBE 19 SEACAT Recorder measures conductivity, temperature, and pressure (depth). The SEACAT is self-powered and self-contained and can be deployed in profiling or moored mode. The SBE 19 SEACAT was replaced in 2001 by the 19plus. more information from Sea-Bird Electronics Community Standard Description: http://vocab.nerc.ac.uk/collection/L22/current/TOOL0042/
Cruise: EN265
EN265
R/V Endeavor
Community Standard Description
International Council for the Exploration of the Sea
R/V Endeavor
vessel
EN265
Dr John Sibunka
Northeast Fisheries Science Center - Sandy Hook
Cruise: AL9605
AL9605
Community Standard Description
International Council for the Exploration of the Sea
R/V Albatross IV
vessel
AL9605
Dr John Green
Northeast Fisheries Science Center - Narragansett
http://globec.whoi.edu/globec-dir/reports/al9605/al9605.html
Report describing AL9605
Cruise: EN282
EN282
R/V Endeavor
Community Standard Description
International Council for the Exploration of the Sea
R/V Endeavor
vessel
EN282
Dr John Sibunka
Northeast Fisheries Science Center - Sandy Hook
R/V Endeavor
Community Standard Description
International Council for the Exploration of the Sea
R/V Endeavor
vessel
Community Standard Description
International Council for the Exploration of the Sea
R/V Albatross IV
vessel