http://lod.bco-dmo.org/id/dataset/3757
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2012-10-24
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Methane seep hard substrate species collected on RV/Atlantis AT15-44, AT15-59, AT15-68, AT18-10 in the Pacific, off Costa Rica and USA from 2009-2011 (Seep Carbonate Ecology CROCKS II project)
2012-10-24
publication
2012-10-24
revision
BCO-DMO Linked Data URI
2012-10-24
creation
http://lod.bco-dmo.org/id/dataset/3757
Lisa A. Levin
University of California-San Diego Scripps
principalInvestigator
Gregory Rouse
University of California-San Diego Scripps
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Levin, L. A., Rouse, G. (2012) Methane seep hard substrate species collected on RV/Atlantis AT15-44, AT15-59, AT15-68, AT18-10 in the Pacific, off Costa Rica and USA from 2009-2011 (Seep Carbonate Ecology CROCKS II project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). Version Date 2012-10-24 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/3757 [access date]
Methane seep hard substrate species collected on 4 RV/Atlantis cruises and lodged at the SIO Benthic Invertebrate Collection. Dataset Description: <p>Methane seep hard substrate species collected on 4 RV/Atlantis cruises and lodged at the SIO Benthic Invertebrate Collection.</p>
<p>Samples were taken at methane seeps on the Costa Rica Margin (8o 55.8 N 84o 18.7 W) and at Hydrate Ridge, Oregon Margin (44o 34'N, 125o 9 W).</p>
<p>Field investigations (collections and experiments) were made using the submersible ALVIN on the RV Atlantis at methane seeps on the Costa Rica margin during 2009 (AT 15-44) and 2010 (AT 15-59 funded by OCE 0939557). To compliment the studies of carbonate ecosystems off Costa Rica, but in a lower-oxygen realm, we examined parallel ecosystems and conducted parallel colonization experiments at Hydrate Ridge methane seeps. AT 15-68 was conducted with ALVIN at the northern, southern and southeast summits of Hydrate Ridge from July 30-Aug. 9, 2010, and AT 18-10 was conducted with ROV Jason, to recover experiments placed at Hydrate Ridge in 2010.</p>
<p>Collections from the two Costa Rica cruises yielded 909 lots cataloged into the Scripps Institution of Oceanography Benthic Invertebrate Collection (SIO-BIC), with 1874 whole specimens and 342 tissue samples. DNA has been extracted from 294 specimens and minimally sequenced for Cytochrome oxidase I (some for 16S and 18S as well). Collections from the Oregon Hydrate Ridge cruises in 2010 and 2011 resulted in 488 lots cataloged into SIO-BIC with 682 specimens and 295 tissue samples. DNA has been extracted from about 200 specimens and some sequenced (mainly CO1, but some for 16S and 1S).</p>
<p>The Costa Rica methane seeps hosted about 25 species of gastropods that are likely to be endemic to seeps, this is exceptionally high diversity, twice the normal 8-12 species found at seeps. Among them was the first species of Neomphalidae from a seep, this group was previously known from vents only, and two species of Lepetodrilidae, almost only known from vents.</p>
<p>The diversity of carbonate macrofauna is higher at Costa Rica seeps than at Hydrate Ridge seeps, in both active and inactive settings. Faunal diversity is higher on active carbonates at Costa Rica and Hydrate Ridge than on inactive carbonates or within active seep (microbial mat-covered) sediments.</p> Methods and Sampling: <p>Station locations:</p>
<p>Costa Rica Margin&nbsp;&nbsp;&nbsp; Lat&nbsp;&nbsp;&nbsp; Long<br />
CR Quepos Landslide&nbsp;&nbsp;&nbsp; 8 50.0 N&nbsp;&nbsp;&nbsp; 84 13.0 W<br />
CR Jaco Summit&nbsp;&nbsp;&nbsp; 9 10.4 N&nbsp;&nbsp;&nbsp; 84 47.9 W<br />
CR Mound 12&nbsp;&nbsp;&nbsp; 8 55.8 N&nbsp;&nbsp;&nbsp; 84 18.7 W<br />
CR Mound 11&nbsp;&nbsp;&nbsp; 8 55.3 N&nbsp;&nbsp;&nbsp; 84 18.2 W<br />
CR Mound Quepos&nbsp;&nbsp;&nbsp; 9 1.9 N&nbsp;&nbsp;&nbsp; 84 37.2 W<br />
CR Jaco Wall&nbsp;&nbsp;&nbsp; 9 7.2 N&nbsp;&nbsp;&nbsp; 84 50.5&nbsp; W<br />
&nbsp;&nbsp;&nbsp; &nbsp;&nbsp;&nbsp;<br />
Oregon:&nbsp;&nbsp;&nbsp; &nbsp;&nbsp;&nbsp;<br />
Hydrate Ridge North &nbsp;&nbsp;&nbsp; 44 34 N&nbsp;&nbsp;&nbsp; 125 9 W<br />
Hydrate Ridge South&nbsp;&nbsp;&nbsp; 44 40 N&nbsp;&nbsp;&nbsp; 125 6 W<br />
&nbsp;</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-0825791 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=0825791
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-0826254 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=0826254
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-0939559 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=0939559
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-0825436 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=0825436
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-0939232 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=0939232
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-0939557 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=0939557
completed
Lisa A. Levin
University of California-San Diego Scripps
858-534-3579
9500 Gilman Drive Mail Code: 0218
La Jolla
CA
92093-0218
USA
llevin@ucsd.edu
pointOfContact
Gregory Rouse
University of California-San Diego Scripps
858-534-7973
9500 Gilman Drive Mail Code: 0202
La Jolla
CA
92093
USA
grouse@ucsd.edu
pointOfContact
asNeeded
Unknown
phylum
subphylum_class
family
name
region
station
depth_range
number
Alvin tube core
Multi Corer
theme
None, User defined
phylum
taxon
family
No BCO-DMO term
region
station
number
featureType
BCO-DMO Standard Parameters
Alvin tube core
Multi Corer
instrument
BCO-DMO Standard Instruments
AT15-44
AT15-59
AT15-68
AT18-10
service
Deployment Activity
Pacific, off Costa Rica
Pacific Ocean off Costa Rica
Pacific Ocean, off USA
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Short-term colonization processes at Costa Rica methane seeps
https://osprey.bco-dmo.org/project/2185
Short-term colonization processes at Costa Rica methane seeps
<p>This RAPID project will conduct 5 submersible or ROV dives to collect a series of colonization experiments deployed in March 2009 on Mound 12 off Costa Rica (997 m). These experiments were deployed opportunistically, and to optimize the information that could be obtained, the PIs needed to recover them within a 12 month time frame. Early colonization of rock, wood, shell and tube substrates will be studied. The microbes, foraminiferans and metazoans present after 6-12 mo will be compared to those colonizing similar experiments to be deployed at Hydrate Ridge, where seeps occur within an oxygen minimum zone. The overall project goal is to integrate physical, geological, chemical and biological data to develop a holistic view of the influence of seep-generated carbonate hard-ground ecosystems on margins.</p>
<p>The objectives of the research are to (a) Compare colonizers at seeps off Costa Rica and Hydrate Ridge to assess the importance of different oxygen regimes in the development of anaerobic methane oxidation, sulfide oxiders and other microbial metabolisms on hard substrates, and to evaluate their roles in driving protozoan and metazoan succession at methane seeps. (b) Deploy a suite of biotic and abiotic substrates to distinguish the specific roles of carbonate substrate from those of other hard substrates (wood, clam and mussel shells, worm tubes) available. (c) Explore the similarity of vent and seep colonization processes by comparing colonization at the Costa Rica seeps, where vent species are common, to the Hydrate Ridge seeps, where they are not. (d) Determine whether there are diagnosable biogeographic isotope or other biomarker signatures from newly recruited Costa Rica microbial, foraminiferal and animal populations at active vs. inactive seeps, and whether these differ from those at Hydrate Ridge.</p>
<p>This research will involve international participation from Costa Rican scientists at the Univ. of Costa Rica. </p>
Seep Carbonate Ecology CROCKS II
largerWorkCitation
project
eng; USA
oceans
Pacific, off Costa Rica; Pacific Ocean off Costa Rica; Pacific Ocean, off USA
2012-10-24
Costa Rica seafloor methane seeps 8 deg 55 N 84 deg 18 W depth 990m
0
BCO-DMO catalogue of parameters from Methane seep hard substrate species collected on RV/Atlantis AT15-44, AT15-59, AT15-68, AT18-10 in the Pacific, off Costa Rica and USA from 2009-2011 (Seep Carbonate Ecology CROCKS II project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/30272.rdf
Name: phylum
Units: text
Description: <p>taxonomic phylum</p>
http://lod.bco-dmo.org/id/dataset-parameter/30273.rdf
Name: subphylum_class
Units: text
Description: <p>taxonomic subphylum or class</p>
http://lod.bco-dmo.org/id/dataset-parameter/30274.rdf
Name: family
Units: text
Description: <p>taxonomic family</p>
http://lod.bco-dmo.org/id/dataset-parameter/30275.rdf
Name: name
Units: text
Description: <p>taxonomic name at most specific level possible</p>
http://lod.bco-dmo.org/id/dataset-parameter/30276.rdf
Name: region
Units: text
Description: <p>geographic region where sample was collected: HR = Hydrate Ridge, Orgeon; CR = Costa Rica Margin</p>
http://lod.bco-dmo.org/id/dataset-parameter/30277.rdf
Name: station
Units: text
Description: <p>station name</p>
http://lod.bco-dmo.org/id/dataset-parameter/30278.rdf
Name: depth_range
Units: meters
Description: <p>depth range of collection</p>
http://lod.bco-dmo.org/id/dataset-parameter/30279.rdf
Name: number
Units: integer
Description: <p>number of samples sequenced</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
8416
https://datadocs.bco-dmo.org/file/5AAMvYpfwx6r22/seep_specimens.csv
seep_specimens.csv
Primary data file for dataset ID 3757
download
https://osprey.bco-dmo.org/dataset/3757/data/download
download
onLine
dataset
<p>Station locations:</p>
<p>Costa Rica Margin&nbsp;&nbsp;&nbsp; Lat&nbsp;&nbsp;&nbsp; Long<br />
CR Quepos Landslide&nbsp;&nbsp;&nbsp; 8 50.0 N&nbsp;&nbsp;&nbsp; 84 13.0 W<br />
CR Jaco Summit&nbsp;&nbsp;&nbsp; 9 10.4 N&nbsp;&nbsp;&nbsp; 84 47.9 W<br />
CR Mound 12&nbsp;&nbsp;&nbsp; 8 55.8 N&nbsp;&nbsp;&nbsp; 84 18.7 W<br />
CR Mound 11&nbsp;&nbsp;&nbsp; 8 55.3 N&nbsp;&nbsp;&nbsp; 84 18.2 W<br />
CR Mound Quepos&nbsp;&nbsp;&nbsp; 9 1.9 N&nbsp;&nbsp;&nbsp; 84 37.2 W<br />
CR Jaco Wall&nbsp;&nbsp;&nbsp; 9 7.2 N&nbsp;&nbsp;&nbsp; 84 50.5&nbsp; W<br />
&nbsp;&nbsp;&nbsp; &nbsp;&nbsp;&nbsp;<br />
Oregon:&nbsp;&nbsp;&nbsp; &nbsp;&nbsp;&nbsp;<br />
Hydrate Ridge North &nbsp;&nbsp;&nbsp; 44 34 N&nbsp;&nbsp;&nbsp; 125 9 W<br />
Hydrate Ridge South&nbsp;&nbsp;&nbsp; 44 40 N&nbsp;&nbsp;&nbsp; 125 6 W<br />
&nbsp;</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Alvin tube core
Alvin tube core
PI Supplied Instrument Name: Alvin tube core Instrument Name: Alvin tube core Instrument Short Name:Tube Core Instrument Description: A plastic tube, about 40 cm (16 inches) long, is pushed into the sediment by Alvin's manipulator arm to collect a sediment core.
Multi Corer
Multi Corer
PI Supplied Instrument Name: Multi Corer PI Supplied Instrument Description:Ocean Instruments MultiCorer Instrument Name: Multi Corer Instrument Short Name:Multi Corer Instrument Description: The Multi Corer is a benthic coring device used to collect multiple, simultaneous, undisturbed sediment/water samples from the seafloor. Multiple coring tubes with varying sampling capacity depending on tube dimensions are mounted in a frame designed to sample the deep ocean seafloor. For more information, see Barnett et al. (1984) in Oceanologica Acta, 7, pp. 399-408. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/51/
Cruise: AT15-44
AT15-44
R/V Atlantis
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantis
vessel
AT15-44
Lisa A. Levin
University of California-San Diego Scripps
Cruise: AT15-59
AT15-59
R/V Atlantis
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantis
vessel
AT15-59
Lisa A. Levin
University of California-San Diego Scripps
Cruise: AT15-68
AT15-68
R/V Atlantis
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantis
vessel
AT15-68
Lisa A. Levin
University of California-San Diego Scripps
Cruise: AT18-10
AT18-10
R/V Atlantis
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantis
vessel
AT18-10
Lisa A. Levin
University of California-San Diego Scripps
R/V Atlantis
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantis
vessel