http://lod.bco-dmo.org/id/dataset/3765
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2012-10-31
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Synechococcus counts determined by epifluorescent microscopy from samples collected on R/V Atlantis cruise AT15-61 in the Eastern Tropical South Pacific in 2010 (Syne_ETSP project)
2012-10-31
publication
2012-10-31
revision
Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)
2019-08-01
publication
https://doi.org/10.1575/1912/bco-dmo.3765.1
Eric A. Webb
University of Southern California
principalInvestigator
Jill Sohm
University of Southern California
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Webb, E., Sohm, J. (2012) Synechococcus counts determined by epifluorescent microscopy from samples collected on R/V Atlantis cruise AT15-61 in the Eastern Tropical South Pacific in 2010 (Syne_ETSP project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2012-10-31 [if applicable, indicate subset used]. doi:10.1575/1912/bco-dmo.3765.1 [access date]
Synechococcus counts from AT15-61 (ETSP2010) cruise. Dataset Description: <p><em>Synechococcus</em> epifluorescent microscopy counts from AT15-61 (ETSP2010) cruise.</p> Methods and Sampling: <p>Dates are given in local (Chile) time. Clocks were not adjusted while at sea.</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-0825922 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=0825922
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-0943319 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=0943319
completed
Eric A. Webb
University of Southern California
213-740-7954
Department of Biological Sciences, Marine and Environmental Biology Section; Dornsife College of Letters, Arts, and Sciences 3616 Trousdale Parkway AHF 331
Los Angeles
CA
90089-0371
USA
eawebb@usc.edu
pointOfContact
Jill Sohm
University of Southern California
213-740-7977
Dept. Biological Sciences; Dornsife College of Letters, Arts, and Sciences; 3616 Trousdale Pkwy AHF 107
Los Angeles
CA
90089-0371
USA
sohm@usc.edu
pointOfContact
asNeeded
Dataset Version: 1
Unknown
cruise_id
cruise_synonym
sta
date_local
month_local
day_local
year
lat
lon
lon_360
depth
cells_per_field
vol_filt
area_filter
fields_per_filter
abundance
abund_log
theme
None, User defined
Cruise identfier
station number
date_local
month_local
day_local
year
latitude
longitude
longitude from 0 to 360 degrees
depth
No BCO-DMO term
volume of water filtered
synechococcus abundance
featureType
BCO-DMO Standard Parameters
AT15-61
service
Deployment Activity
Eastern Tropical South Pacific
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
RAPID: Synechococcus diversity and Fe stress and the relationship to dissolved metals in the Eastern Tropical South Pacific
https://osprey.bco-dmo.org/project/2248
RAPID: Synechococcus diversity and Fe stress and the relationship to dissolved metals in the Eastern Tropical South Pacific
<p>The unicellular cyanobacterium <i>Synechococcus</i> is one of the most widespread and abundant photosynthetic organisms in the ocean, contributing substantially to marine primary production. It is also extremely diverse, with 16 clades identified so far. This diversity, however, has yet to be correlated with specific, well-defined ecological niches. It is important to define what these ecological niches are in order to determine the significance of <i>Synechococcus</i> diversity, i.e., does the clade present in a certain regime have a large impact on biogeochemical cycling in that area? In parallel, the distribution of the clades must also be defined, to able to understand more clearly the role of Synechococcus in the ocean, and how it might change in the future. In the funded project, "The role of iron (Fe) in controlling in situ distributions and activities of marine <i>Synechococcus</i> OCE-0825922" investigators Jill A Sohm (J.A.S.) and Eric Webb have been mapping the distribution of <i>Synechococcus</i> clades in the western Pacific, the North and South Atlantic, and off the coast of Los Angeles, in order to better define the ecological niches of the many clades of <i>Synechococcus</i>. <b>In this project, Webb and Sohm will participate in a research cruise occurring in February 2010 in the Eastern Tropical South Pacific (ETSP), a data poor region with little known about the ecology of its picocyanobacteria.</b> While it has been shown the <i>Synechococcus</i> from clade four dominate the upwelling region farther south of the proposed cruise, the diversity of the population farther offshore is much less well defined. <b>This cruise would allow expansion of the current database of <i>Synechococcus</i> clade distribution to an area where there is little to no data</b>, and add experimental field work to an existing project, testing the specific affects of Fe, light, temperature and nutrients on the diversity of field populations. These data combined with concurrent lab research will provide insight into the potential of oceanic change to affect the distribution and the activity of <i>Synechococcus</i>.</p>
<p>In addition to defining the role and impact of Fe limitation on marine <i>Synechococcus</i> activity and diversity in the field, this project will develop field incubation-tested, quantitative PCR-based Fe stress diagnostics that will be available to the community. Furthermore, the investigators will attempt to isolate and make available <i>Synechococcus</i> strains from the region; as such representatives are not in existence. The upkeep and addition to the culture collection in the Webb lab is an important service for the oceanographic community, as these strains are sent to any researcher that requests them without charge. Metadata obtained on this cruise will be shared with the oceanographic community by depositing them in a national database. Lastly this project will provide valuable research cruise experience and career development for one post-doctoral fellow, J.A.S., and one graduate student.</p>
Syne_ETSP
largerWorkCitation
project
eng; USA
oceans
Eastern Tropical South Pacific
-100
-80
-20
-10
2010-02-01
2010-02-24
Eastern Tropical South Pacific, coast of Chile
0
BCO-DMO catalogue of parameters from Synechococcus counts determined by epifluorescent microscopy from samples collected on R/V Atlantis cruise AT15-61 in the Eastern Tropical South Pacific in 2010 (Syne_ETSP project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/30393.rdf
Name: cruise_id
Units: text
Description: <p>Cruise identifier.</p>
http://lod.bco-dmo.org/id/dataset-parameter/30394.rdf
Name: cruise_synonym
Units: text
Description: <p>Alternate identifier of the cruise.</p>
http://lod.bco-dmo.org/id/dataset-parameter/30395.rdf
Name: sta
Units: unitless
Description: <p>Station identifier.</p>
http://lod.bco-dmo.org/id/dataset-parameter/30396.rdf
Name: date_local
Units: unitless
Description: <p>Local date. format: mm/dd/YYYY</p>
http://lod.bco-dmo.org/id/dataset-parameter/30397.rdf
Name: month_local
Units: unitless
Description: <p>2-digit month of year, local. format: mm (01 to 12)</p>
http://lod.bco-dmo.org/id/dataset-parameter/30398.rdf
Name: day_local
Units: unitless
Description: <p>2-digit day of month, local. format: dd (01 to 31)</p>
http://lod.bco-dmo.org/id/dataset-parameter/30399.rdf
Name: year
Units: unitless
Description: <p>4-digit year. format: YYYY</p>
http://lod.bco-dmo.org/id/dataset-parameter/30400.rdf
Name: lat
Units: degrees North
Description: <p>Latitude in degrees North. Negative = South.</p>
http://lod.bco-dmo.org/id/dataset-parameter/30401.rdf
Name: lon
Units: degrees East
Description: <p>Longitude in degrees East. Negative = West.</p>
http://lod.bco-dmo.org/id/dataset-parameter/30402.rdf
Name: lon_360
Units: degrees
Description: <p>Longitude ranging from 0 to 360 degrees. Calculated from the original lon_360 provided by PI.</p>
http://lod.bco-dmo.org/id/dataset-parameter/30403.rdf
Name: depth
Units: meters
Description: <p>Sample depth.</p>
http://lod.bco-dmo.org/id/dataset-parameter/30404.rdf
Name: cells_per_field
Units: unitless
Description: <p>cells/field</p>
http://lod.bco-dmo.org/id/dataset-parameter/30405.rdf
Name: vol_filt
Units: mL
Description: <p>Volume filtered in milliliters.</p>
http://lod.bco-dmo.org/id/dataset-parameter/30406.rdf
Name: area_filter
Units: um^2
Description: <p>Area of filter in square micrometers.</p>
http://lod.bco-dmo.org/id/dataset-parameter/30407.rdf
Name: fields_per_filter
Units: unitless
Description: <p>fields/filter</p>
http://lod.bco-dmo.org/id/dataset-parameter/30408.rdf
Name: abundance
Units: cells/mL
Description: <p>Synechococcus abundance in cells per milliliter.</p>
http://lod.bco-dmo.org/id/dataset-parameter/30409.rdf
Name: abund_log
Units: cells/mL
Description: <p>Log of synechococcus abundance in cells per milliliter.</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
6192
https://darchive.mblwhoilibrary.org/bitstream/1912/24384/1/dataset-3765_synechococcusetsp__v1.tsv
download
https://doi.org/10.1575/1912/bco-dmo.3765.1
download
onLine
dataset
<p>Dates are given in local (Chile) time. Clocks were not adjusted while at sea.</p>
Specified by the Principal Investigator(s)
<p>BCO-DMO calculated lon from the lon_360 column provided by the PI. Parameter names were changed to conform to BCO-DMO convention.</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Cruise: AT15-61
AT15-61
R/V Atlantis
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantis
vessel
AT15-61
Douglas G. Capone
University of Southern California
R/V Atlantis
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantis
vessel