http://lod.bco-dmo.org/id/dataset/3772
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2012-11-07
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Species counts on wood, rock and biotic colonization substrates from R/V Atlantis AT15-59 in the Pacific Ocean on the Costa Rica margin from 2010-2010 (Seep Carbonate Ecology CROCKS II project)
2012-11-07
publication
2012-11-07
revision
BCO-DMO Linked Data URI
2012-11-07
creation
http://lod.bco-dmo.org/id/dataset/3772
Lisa A. Levin
University of California-San Diego Scripps
principalInvestigator
Gregory Rouse
University of California-San Diego Scripps
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Levin, L. A., Rouse, G. (2012) Species counts on wood, rock and biotic colonization substrates from R/V Atlantis AT15-59 in the Pacific Ocean on the Costa Rica margin from 2010-2010 (Seep Carbonate Ecology CROCKS II project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). Version Date 2012-11-07 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/3772 [access date]
Species counts (per 200cm2) on wood, rock and biotic colonization substrates deployed for 10 months at Mound 12 on the Costa Rica margin (AT 15-59) Dataset Description: <p><strong>Related References:</strong><br />
<span style="line-height:20.8px">Case, D. H., Pasulka, A.L., Marlow J.J., Grupe, B. , Levin, L.A., Orphan, V.J. Methane seep carbonates host distinct, diverse, and dynamic microbial assemblages.&nbsp; Environmental Microbiology and Environmental Microbiology Reports. e01348-15 (2015).</span></p>
<p>Levin, L.A., Mendoza, G. Grupe B., Gonzalez, J. Jellison, B. Rouse, G. Thurber A. Waren A. Biodiversity on the rocks: macrofauna inhabiting authigenic carbonate at Costa Rica methane seeps. PLOS ONE 10(7): e0131080. doi:10.1371/journal.pone.0131080 &nbsp;(2015)&nbsp;</p>
<p>Levin, L.A., G.F. Mendoza and B.M. Grupe, Methane seepage effects on biodiversity and biological traits of macrofauna inhabiting authigenic carbonates. Deep-sea Res. II (2016) http://dx.doi.org/10.1016/j.dsr2.2015.05.021 (2016)</p>
<p>Marlow, J.J., Steele, J.A., Ziebis, W., Thurger A.R., Levin, L.A. and Orphan, V.J. Carbonate hosted methanotrophy: an unrecognized methane sink in the deep sea. Nature Communications 5: &nbsp;5094 (2014) DOI: 10.1038/ncomms6094</p>
<p>Marlow, J.J., Steele, J.A., Case, D.H. Connon, S.A., Levin, L.A. and V.J. Orphan. Microbial abundance and diversity patterns associated with sediments and carbonates from the methane seep environments of Hydrate Ridge, OR. Frontiers in Marine Science, Aquatic Microbiology. Vol. 1 Article 44 doi: 10.3389/fmars.2014.00044 &nbsp;(2014)&nbsp;<br />
&nbsp;</p> Methods and Sampling:
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-0825791 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=0825791
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-0826254 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=0826254
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-0939559 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=0939559
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-0825436 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=0825436
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-0939232 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=0939232
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-0939557 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=0939557
completed
Lisa A. Levin
University of California-San Diego Scripps
858-534-3579
9500 Gilman Drive Mail Code: 0218
La Jolla
CA
92093-0218
USA
llevin@ucsd.edu
pointOfContact
Gregory Rouse
University of California-San Diego Scripps
858-534-7973
9500 Gilman Drive Mail Code: 0202
La Jolla
CA
92093
USA
grouse@ucsd.edu
pointOfContact
asNeeded
Unknown
cruise_id
region
station
lat
lon
taxon
sample_size
abundance_200sqcm
abund_stderr
abund_pcent
activity
theme
None, User defined
Cruise identfier
region
station
latitude
longitude
taxon
No BCO-DMO term
abundance
featureType
BCO-DMO Standard Parameters
AT15-59
service
Deployment Activity
Pacific Ocean off Costa Rica
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Short-term colonization processes at Costa Rica methane seeps
https://osprey.bco-dmo.org/project/2185
Short-term colonization processes at Costa Rica methane seeps
<p>This RAPID project will conduct 5 submersible or ROV dives to collect a series of colonization experiments deployed in March 2009 on Mound 12 off Costa Rica (997 m). These experiments were deployed opportunistically, and to optimize the information that could be obtained, the PIs needed to recover them within a 12 month time frame. Early colonization of rock, wood, shell and tube substrates will be studied. The microbes, foraminiferans and metazoans present after 6-12 mo will be compared to those colonizing similar experiments to be deployed at Hydrate Ridge, where seeps occur within an oxygen minimum zone. The overall project goal is to integrate physical, geological, chemical and biological data to develop a holistic view of the influence of seep-generated carbonate hard-ground ecosystems on margins.</p>
<p>The objectives of the research are to (a) Compare colonizers at seeps off Costa Rica and Hydrate Ridge to assess the importance of different oxygen regimes in the development of anaerobic methane oxidation, sulfide oxiders and other microbial metabolisms on hard substrates, and to evaluate their roles in driving protozoan and metazoan succession at methane seeps. (b) Deploy a suite of biotic and abiotic substrates to distinguish the specific roles of carbonate substrate from those of other hard substrates (wood, clam and mussel shells, worm tubes) available. (c) Explore the similarity of vent and seep colonization processes by comparing colonization at the Costa Rica seeps, where vent species are common, to the Hydrate Ridge seeps, where they are not. (d) Determine whether there are diagnosable biogeographic isotope or other biomarker signatures from newly recruited Costa Rica microbial, foraminiferal and animal populations at active vs. inactive seeps, and whether these differ from those at Hydrate Ridge.</p>
<p>This research will involve international participation from Costa Rican scientists at the Univ. of Costa Rica. </p>
Seep Carbonate Ecology CROCKS II
largerWorkCitation
project
eng; USA
biota
oceans
Pacific Ocean off Costa Rica
2012-11-07
Costa Rica seafloor methane seeps 8 deg 55 N 84 deg 18 W depth 990m
0
BCO-DMO catalogue of parameters from Species counts on wood, rock and biotic colonization substrates from R/V Atlantis AT15-59 in the Pacific Ocean on the Costa Rica margin from 2010-2010 (Seep Carbonate Ecology CROCKS II project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/30526.rdf
Name: cruise_id
Units: alphanumeric
Description: <p>cruise identification; Atlantis</p>
http://lod.bco-dmo.org/id/dataset-parameter/30527.rdf
Name: region
Units: text
Description: <p>broad area of study</p>
http://lod.bco-dmo.org/id/dataset-parameter/30528.rdf
Name: station
Units: alphanumeric
Description: <p>station name</p>
http://lod.bco-dmo.org/id/dataset-parameter/30529.rdf
Name: lat
Units: decimal degrees
Description: <p>latitude; West is negative</p>
http://lod.bco-dmo.org/id/dataset-parameter/30530.rdf
Name: lon
Units: decimal degrees
Description: <p>longitude; North is positive</p>
http://lod.bco-dmo.org/id/dataset-parameter/30531.rdf
Name: taxon
Units: text
Description: <p>taxonomic name</p>
http://lod.bco-dmo.org/id/dataset-parameter/30532.rdf
Name: sample_size
Units: integer
Description: <p>sample size</p>
http://lod.bco-dmo.org/id/dataset-parameter/30533.rdf
Name: abundance_200sqcm
Units: per 200 cm^2
Description: <p>taxon abundance</p>
http://lod.bco-dmo.org/id/dataset-parameter/30534.rdf
Name: abund_stderr
Units: dimensionless
Description: <p>standard error of abundance value</p>
http://lod.bco-dmo.org/id/dataset-parameter/30535.rdf
Name: abund_pcent
Units: percent
Description: <p>percent taxon abundance of total sample</p>
http://lod.bco-dmo.org/id/dataset-parameter/30536.rdf
Name: activity
Units: unknown
Description: <p>methane seep activity at station</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
45532
https://datadocs.bco-dmo.org/file/QAAXx4yt6wJpKo/seep_colonization.csv
seep_colonization.csv
Primary data file for dataset ID 3772
download
https://osprey.bco-dmo.org/dataset/3772/data/download
download
onLine
dataset
<p>Colonization substrates had macrofauna (&gt;0.3 mm) and meiofauna (&gt;0.42 microns) removed and preserved.&nbsp; Representative individuals were frozen for subsequent stable isotope analyses.</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Cruise: AT15-59
AT15-59
R/V Atlantis
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantis
vessel
AT15-59
Lisa A. Levin
University of California-San Diego Scripps
R/V Atlantis
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantis
vessel