http://lod.bco-dmo.org/id/dataset/3779
eng; USA
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Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
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Monday - Friday 8:00am - 5:00pm
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2012-11-15
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Experimental results from a study of pPeudo-nitzschia multiseries domoic acid production, C-fixation, mean growth, and element composition under varying pCO2 and phosphate levels (PhytoTM_in_HighCO2 project)
2012-11-15
publication
2012-11-15
revision
BCO-DMO Linked Data URI
2012-11-15
creation
http://lod.bco-dmo.org/id/dataset/3779
Feixue Fu
University of Southern California
principalInvestigator
David A. Hutchins
University of Southern California
principalInvestigator
Sergio A. Sanudo-Wilhelmy
University of Southern California
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Fu, F., Hutchins, D. A., Sanudo-Wilhelmy, S. A. (2012) Experimental results from a study of pPeudo-nitzschia multiseries domoic acid production, C-fixation, mean growth, and element composition under varying pCO2 and phosphate levels (PhytoTM_in_HighCO2 project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 15 Nov 2012) Version Date 2012-11-15 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/3779 [access date]
Pseudo-nitzschia multiseries domoic acid production, C-fixation, mean growth, and element composition experiments under varying pCO2 and phosphate levels (means of triplicates). Dataset Description: <p>Experimental data examining <i>Pseudo-nitzschia multiseries</i> (CCMP 2708) domic acid production, Carbon fixation, growth, and elemental composition under varying pCO2 and phosphate treatments. Values reported are the means of triplicate samples.<br />
<br />
Data and methods are described in:<br />
<b>Sun</b> J., Hutchins D. A., Feng Y., Seubert E. L., Caron D. A., &amp; Fu F.-X., 2011. Effects of changing pCO2 and phosphate availability on domoic acid production and physiology of the marine harmful bloom diatom Pseudo-nitzschia multiseries. Limnology and Oceanography 56(3):829-840. DOI: <a href="http://dx.doi.org/10.4319/lo.2011.56.3.0829" target="_blank">10.4319/lo.2011.56.3.0829</a></p> Methods and Sampling: <p>The methods below are described in Sun et al. 2011.</p>
<p><b>Cultures and growth conditions</b><br />
Stock cultures of marine diatom <i>Pseudo-nitzschia multiseries</i> (Hasle) (CCMP 2708, originally isolated from Eastern Canada) were maintained at 17 degrees C in 0.2 um-filtered, microwave-sterilized natural seawater, enriched with levels of phosphate, nitrate, silicate, vitamins, and trace nutrients as in Price et al. (1988). Light was provided on a 12 h dark:12 h light cycle using cool white fluorescent bulbs at 120 umol photons per square meter per second. Irradiance was measured with a biospherical LICOR sensor (model LI-250).</p>
<p><b>Experimental design and determination of growth rates<br />
</b>Semi-continuous culturing methods were used in order to measure the effects of P availability and/or pCO2 levels during acclimated, steady-state growth. Cultures were diluted daily with medium that was previously adjusted to the appropriate temperature and pCO2. Each bottle was diluted back to the same cell density present in that bottle directly after the previous day&rsquo;s dilution. Cultures were harvested following approximately 4 to 6 weeks of semi-continuous incubation when they were fully acclimated to the experimental conditions, after statistically invariant growth rates were recorded for at least 4 to 6 consecutive dilutions.<br />
<br />
Samples from each culture bottle were always taken at the same time in the diel cycle, between 09:00 h and 10:00 h in the morning, to measure cell density and thus determine changes in growth rate. Dilutions were done in real time using biomass estimates made by in vivo fluorescence, and were subsequently validated using preserved cell count samples. Growth rates were calculated based on the equation:<br />
&nbsp;&nbsp; u = (lnNb - lnNa) / (tb - ta),<br />
where Na and Nb are the average cell density at times ta (directly after a dilution) and tb (directly before the next day&rsquo;s dilution). For cell counts, whole-culture samples were fixed with glutaraldehyde (2.5% v to v final concentration) and counted in triplicate. About 1000 cells per replicate were enumerated in a 1-mL Sedgewick-Rafter counting chamber, using an Olympus BX51 epifluorescence microscope at 100-fold magnification.<br />
<br />
Triplicate bottles at two conditions of phosphate availability were equilibrated at three different CO2 concentrations by gentle bubbling with commercially prepared certified standard air and CO2 gas mixtures (Praxair Gas). CO2 concentrations examined included preindustrial atmospheric levels (~22 Pa), near-present day concentrations (~41 Pa), and values predicted to occur before the end of this century (~74 Pa, IPCC 2007). In-line high efficiency particulate air (HEPA) filters were used to avoid contamination from particles in the gas tanks or lines. Phosphate levels used were 20 umol per liter (P replete) and 0.5 umol per liter (P limited). A total of six different phosphate and CO2 conditions were used in this study: 20 umol per liter P and ~22 Pa CO2; 20 umol per liter P and ~41 Pa CO2; 20 umol per liter P and ~74 Pa CO2; 0.5 umol per liter P and ~22 Pa CO2; 0.5 umol per liter P and ~41 Pa CO2; and 0.5 umol per liter P and ~74 Pa CO2.</p>
<p><b>Carbonate buffer system measurements and pCO2 treatments</b><br />
The pH in each bottle was monitored daily using a high sensitivity microprocessor pH-meter (Orion EA 940), calibrated with pH 4, 7 and 10 buffer solutions. The relative precision of this instrument is ~0.01 and accuracy is ~0.03 pH units. For the analysis of total dissolved inorganic carbon (DIC), DIC samples were stored in 2 mL capped borosilicate vials free of air bubbles and were preserved with 20 uL saturated HgCl2 per liter, and stored at 4 degrees C until analyzed. Total DIC was measured by acidifying 2-mL 10% of H3PO4 and quantifying the CO2 trapped in an acid sparging column (model CM 5230) with a carbon coulometer (model CM 140, UIC). Certified reference materials obtained from Andrew Dickson (University of California, San Diego, http://andrew.ucsd.edu/co2qc/index.html) were measured periodically during the run and used for calibration. pH values remained invariant before and after the dilution, suggesting that bubbling rates were sufficient to maintain the target CO2 equilibration levels in the medium, regardless of diel changes in photosynthesis and respiration. Based in the daily measurements of pH and DIC, pCO2 stabilized during the early part of the semi-continuous growth period and then remained steady throughout the latter part of the incubation period. Calculated pCO2 values (using CO2SYS; http://www.cdiac.ornl.gov/ftp/co2sys/CO2SYS_calc_XLS ) for the three CO2 treatments in both P treatments ranged from 22-23 Pa, 39-42 Pa, and 73-75 Pa (see table below where the numbers in parenthenses are the standard deviations of triplicate samples), very close to the certified standard gas mixture values. For convenience, these values were averaged and rounded to 22 Pa, 41 Pa, and 74 Pa when referring to the three pCO2 treatments throughout the dataset and paper (Sun et al. 2011).</p>
<p><b>Treatment conditions and calculated pCO2:</b><br />
<table cellspacing="0" cellpadding="2" border="1">
<tbody>
<tr>
<td>Treatment</td>
<td>Measured pH (sd)</td>
<td>Measured DIC (sd); umol/L</td>
<td>Calculated CO2 (sd); umol/L</td>
<td>Calculated pCO2 (sd); Pa</td>
</tr>
<tr>
<td>P-limited, 22 Pa</td>
<td>8.38 (0.05)</td>
<td>1917 (38)</td>
<td>7.4 (0.6)</td>
<td>23 (2)</td>
</tr>
<tr>
<td>P-limited, 41 Pa</td>
<td>8.15 (0.02)</td>
<td>2029 (8)</td>
<td>13.9 (0.7)</td>
<td>42 (2)</td>
</tr>
<tr>
<td>P-limited, 74 Pa</td>
<td>7.94 (0.01)</td>
<td>2145 (9)</td>
<td>24.5 (0.6)</td>
<td>75 (2)</td>
</tr>
<tr>
<td>P-replete, 22 Pa</td>
<td>8.40 (0.03)</td>
<td>1970 (4)</td>
<td>7.1 (0.5)</td>
<td>22 (2)</td>
</tr>
<tr>
<td>P-replete, 41 Pa</td>
<td>8.19 (0.02)</td>
<td>2066 (11)</td>
<td>12.8 (0.8)</td>
<td>40 (3)</td>
</tr>
<tr>
<td>P-replete, 74 Pa</td>
<td>7.96 (0.01)</td>
<td>2177 (6)</td>
<td>23.9 (0.4)</td>
<td>73 (1)</td>
</tr>
</tbody>
</table>
</p>
<p><b>Analysis of POC, PON, POP and BSi</b><br />
Samples for the analysis of particulate organic carbon (POC) and particulate organic nitrogen (PON) were collected on precombusted GF/F glass fiber filters (450 degrees C for 5 hr) under low vacuum and dried at 55 degrees C. The samples were then analyzed on an Elemental Analyzer (Costech Instruments, model 4010). Particulate organic phosphorus (POP) was measured followed by the protocol in Fu et al. (2005). Cellular biogenic silica (BSi) was analyzed according to the spectrophotometric method of Brzezinski and Nelson (1995).</p>
<p><b>Analysis of domoic acid concentrations</b><br />
Particulate and dissolved domoic acid was measured using amnesic shellfish poison (ASP) enzyme-linked immunosorbent assay (ELISA) kits available from Biosense Laboratories. Particulate domoic acid samples were collected on uncombusted Whatman GF/F filters and frozen at &ndash;20 degrees C until analyzed. The filtrate from each sample was also collected, frozen and later analyzed for dissolved DA. Sample preparation and ELISA tests were carried out following the protocol of Biosense Laboratories (2005 version). The limit of detection for the ELISA method for particulate DA is 6.8 ng per liter. Total DA produced per cell (including the sum of both particulate and dissolved DA) was calculated by dividing the DA content of the whole-culture sample by the cell density.</p>
<p><b>References:</b><br />
<b>Brzezinski</b>, M. A., and D. M. Nelson. 1995. The annual silica cycle in the Sargasso Sea near Bermuda. Deep-Sea Res. I. 42: 1215-1237, doi:<a target="_blank" href="http://www.sciencedirect.com/science/article/pii/0967063795935923">10.1016/0967-0637(95)93592-3</a><br />
<b>Fu</b>, F-X., Y. Zhang, K. Leblanc, S. A. Sa&ntilde;udo-Wilhelmy, and D.A. Hutchins. 2005. The biological and biogeochemical consequences of phosphate scavenging onto phytoplankton cell surfaces. Limnol. Oceanogr. 50: 1459-1472, doi: <a target="_blank" href="http://www.aslo.org/lo/toc/vol_50/issue_5/1459.html">10.4319/lo.2005.50.5.1459</a><br />
<b>Platt</b>, T., C. L. Gallegos, and W. G. Harrison. 1980. Photoinhibition of photosynthesis in natural assemblages of marine phytoplankton. J. Mar. Res. 38: 687-701.</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-0850730 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=0850730
completed
Feixue Fu
University of Southern California
2137403188
Department of Biology, MC 0371, University of Southern California 3616 Trousdale Pkwy
Los Angeles
CA
90089
USA
ffu@usc.edu
pointOfContact
David A. Hutchins
University of Southern California
213-740-5616
Department of Biological Sciences 3616 Trousdale Parkway, AHF 20
Los Angeles
CA
90089
USA
dahutch@usc.edu
pointOfContact
Sergio A. Sanudo-Wilhelmy
University of Southern California
213-821-1302
3616 Trousdale Pkwy Dept. of Biological Sciences, AHF 206, Mail Code: 0371
Los Angeles
CA
90089
USA
sanudo@usc.edu
pointOfContact
asNeeded
Dataset Version: 15 Nov 2012
Unknown
condition
pCO2
DA_cellular
DA_cellular_sd
DA_dissolved
DA_dissolved_sd
DA_total
DA_total_sd
C_fix_rate
C_fix_rate_sd
sp_growth_rate
sp_growth_rate_sd
Si
Si_sd
Si_to_C
Si_to_C_sd
C_to_P
C_to_P_sd
C_to_N
C_to_N_sd
CHN Elemental Analyzer
CO2 Coulometer
Fluorescence Microscope Image Analysis System
theme
None, User defined
No BCO-DMO term
Carbon to Nitrogen ratio (C:N)
featureType
BCO-DMO Standard Parameters
CHN Elemental Analyzer
CO2 Coulometer
Fluorescence Microscope Image Analysis System
instrument
BCO-DMO Standard Instruments
lab_Fu
service
Deployment Activity
Los Angeles, CA
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Changing Phytoplankton Trace Metal Requirements in a High CO2 Ocean
https://osprey.bco-dmo.org/project/2241
Changing Phytoplankton Trace Metal Requirements in a High CO2 Ocean
<p>This award is funded under the American Recovery and Reinvestment Act of 2009 (Public Law 111-5). The award is also associated with the NSF Integrative Computing Education and Research (ICER) initiative.</p>
<p>Over the past two decades, the fundamental importance of iron and other bioactive trace metals in structuring marine food webs and biogeochemical cycles has been realized. Even more recently, over the past several years, the international ocean science community has begun to mobilize in an urgent effort to understand the ecosystem-level consequences of rising anthropogenic CO2 and acidification of the global ocean. This project examines the intersection of these two major research themes, by asking the question:<b> How will the trace element requirements of marine phytoplankton change in response to future increases in atmospheric pCO2?</b></p>
<p>Preliminary data generated by the investigators suggests that changing pCO2 can indeed profoundly affect the cellular quotas of Fe, Mo, Zn, Cd, Co and Mn in both prokaryotic and eukaryotic phytoplankton. Trace metals play critical roles as enzymatic co-factors for processes that are closely linked to the availability of CO2 such as carbon and nitrogen fixation, photosynthetic electron transport, and nutrient acquisition. Therefore, it is important to develop methods to quantitatively predict how algal metal requirements will change in tomorrow's rapidly changing ocean.</p>
<p>The investigators will take a three-pronged approach to addressing this overarching question:<br />
(1) Laboratory experiments will measure the trace metal quotas of steady-state cultures of key phytoplankton functional groups like diatoms, coccolithophores, Phaeocystis, and diazotrophic and pico-cyanobacteria while varying pCO2 both alone, and together with other limiting factors such as iron, temperature, and light.<br />
(2) Field work in the Southern California bight will provide measurements in trace metal stoichiometry of natural phytoplankton communities over a seasonal cycle in relation to pCO2 and other environmental variables -- this region is already experiencing some of the largest increases in acidic upwelled water along the entire West Coast.<br />
(3) This observational and correlative study will be coupled with manipulative experiments at the USC Catalina Island facility in which trace metal quotas of the same natural phytoplankton communities can be measured in relation to pCO2 shifts under controlled incubation conditions.</p>
<p>Together, these three complementary approaches will enable the investigators to determine over a variety of temporal and spatial scales how phytoplankton-driven trace element biogeochemistry is likely to change in a future high-CO2 ocean.</p>
PhytoTM_in_HighCO2
largerWorkCitation
project
eng; USA
oceans
Los Angeles, CA
2012-11-15
Laboratory
0
BCO-DMO catalogue of parameters from Experimental results from a study of pPeudo-nitzschia multiseries domoic acid production, C-fixation, mean growth, and element composition under varying pCO2 and phosphate levels (PhytoTM_in_HighCO2 project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/30746.rdf
Name: condition
Units: text
Description: <p>Phosphate treatment/condition. Limited = 0.5 umol per liter P; Replete = 20 umol per liter P.</p>
http://lod.bco-dmo.org/id/dataset-parameter/30747.rdf
Name: pCO2
Units: pa
Description: <p>Calculated partial pressure of CO2. See Acquisition Description for information about how these values were calculated.</p>
http://lod.bco-dmo.org/id/dataset-parameter/30748.rdf
Name: DA_cellular
Units: pg/cell
Description: <p>Cellular particulate domoic acid content.</p>
http://lod.bco-dmo.org/id/dataset-parameter/30749.rdf
Name: DA_cellular_sd
Units: pg/cell
Description: <p>Standard deviation of DA_cellular.</p>
http://lod.bco-dmo.org/id/dataset-parameter/30750.rdf
Name: DA_dissolved
Units: pg/cell
Description: <p>Dissolved domic acid level.</p>
http://lod.bco-dmo.org/id/dataset-parameter/30751.rdf
Name: DA_dissolved_sd
Units: pg/cell
Description: <p>Standard deviation of DA_dissolved.</p>
http://lod.bco-dmo.org/id/dataset-parameter/30752.rdf
Name: DA_total
Units: pg/cell
Description: <p>Total domic acid level (particulate + dissolved).</p>
http://lod.bco-dmo.org/id/dataset-parameter/30753.rdf
Name: DA_total_sd
Units: pg/cell
Description: <p>Standard deviation of DA_total.</p>
http://lod.bco-dmo.org/id/dataset-parameter/30754.rdf
Name: C_fix_rate
Units: mg C per mg Chl-a per hour
Description: <p>Carbon fixation rate of Pseudo-nitzschia multiseries CCMP 2708.</p>
http://lod.bco-dmo.org/id/dataset-parameter/30755.rdf
Name: C_fix_rate_sd
Units: mg C per mg Chl-a per hour
Description: <p>Standard deviation of C_fix_rate</p>
http://lod.bco-dmo.org/id/dataset-parameter/30756.rdf
Name: sp_growth_rate
Units: specific growth per day
Description: <p>Specific growth rates of Pseudo-nitzschia mutliseries CCMP 2708.</p>
http://lod.bco-dmo.org/id/dataset-parameter/30757.rdf
Name: sp_growth_rate_sd
Units: specific growth per day
Description: <p>Standard deviation of sp_growth_rate.</p>
http://lod.bco-dmo.org/id/dataset-parameter/30758.rdf
Name: Si
Units: pmol/cell
Description: <p>Cellular quota of Silicon.</p>
http://lod.bco-dmo.org/id/dataset-parameter/30759.rdf
Name: Si_sd
Units: pmol/cell
Description: <p>Standard deviation of Si.</p>
http://lod.bco-dmo.org/id/dataset-parameter/30760.rdf
Name: Si_to_C
Units: mol:mol
Description: <p>Ratio of cellular Si to Carbon. </p>
http://lod.bco-dmo.org/id/dataset-parameter/30761.rdf
Name: Si_to_C_sd
Units: mol:mol
Description: <p>Standard deviation of Si_to_C.</p>
http://lod.bco-dmo.org/id/dataset-parameter/30762.rdf
Name: C_to_P
Units: mol:mol
Description: <p>Ratio of cellular Carbon to P.</p>
http://lod.bco-dmo.org/id/dataset-parameter/30763.rdf
Name: C_to_P_sd
Units: mol:mol
Description: <p>Standard deviation of C_to_P.</p>
http://lod.bco-dmo.org/id/dataset-parameter/30764.rdf
Name: C_to_N
Units: mol:mol
Description: <p>Ratio of cellular Carbon to N.</p>
http://lod.bco-dmo.org/id/dataset-parameter/30765.rdf
Name: C_to_N_sd
Units: mol:mol
Description: <p>Standard deviation of C_to_N.</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
1048
https://datadocs.bco-dmo.org/file/WWW1E44Ix6p82w/P_multiseries_exp.csv
P_multiseries_exp.csv
Primary data file for dataset ID 3779
download
https://osprey.bco-dmo.org/dataset/3779/data/download
download
onLine
dataset
<p>The methods below are described in Sun et al. 2011.</p>
<p><b>Cultures and growth conditions</b><br />
Stock cultures of marine diatom <i>Pseudo-nitzschia multiseries</i> (Hasle) (CCMP 2708, originally isolated from Eastern Canada) were maintained at 17 degrees C in 0.2 um-filtered, microwave-sterilized natural seawater, enriched with levels of phosphate, nitrate, silicate, vitamins, and trace nutrients as in Price et al. (1988). Light was provided on a 12 h dark:12 h light cycle using cool white fluorescent bulbs at 120 umol photons per square meter per second. Irradiance was measured with a biospherical LICOR sensor (model LI-250).</p>
<p><b>Experimental design and determination of growth rates<br />
</b>Semi-continuous culturing methods were used in order to measure the effects of P availability and/or pCO2 levels during acclimated, steady-state growth. Cultures were diluted daily with medium that was previously adjusted to the appropriate temperature and pCO2. Each bottle was diluted back to the same cell density present in that bottle directly after the previous day&rsquo;s dilution. Cultures were harvested following approximately 4 to 6 weeks of semi-continuous incubation when they were fully acclimated to the experimental conditions, after statistically invariant growth rates were recorded for at least 4 to 6 consecutive dilutions.<br />
<br />
Samples from each culture bottle were always taken at the same time in the diel cycle, between 09:00 h and 10:00 h in the morning, to measure cell density and thus determine changes in growth rate. Dilutions were done in real time using biomass estimates made by in vivo fluorescence, and were subsequently validated using preserved cell count samples. Growth rates were calculated based on the equation:<br />
&nbsp;&nbsp; u = (lnNb - lnNa) / (tb - ta),<br />
where Na and Nb are the average cell density at times ta (directly after a dilution) and tb (directly before the next day&rsquo;s dilution). For cell counts, whole-culture samples were fixed with glutaraldehyde (2.5% v to v final concentration) and counted in triplicate. About 1000 cells per replicate were enumerated in a 1-mL Sedgewick-Rafter counting chamber, using an Olympus BX51 epifluorescence microscope at 100-fold magnification.<br />
<br />
Triplicate bottles at two conditions of phosphate availability were equilibrated at three different CO2 concentrations by gentle bubbling with commercially prepared certified standard air and CO2 gas mixtures (Praxair Gas). CO2 concentrations examined included preindustrial atmospheric levels (~22 Pa), near-present day concentrations (~41 Pa), and values predicted to occur before the end of this century (~74 Pa, IPCC 2007). In-line high efficiency particulate air (HEPA) filters were used to avoid contamination from particles in the gas tanks or lines. Phosphate levels used were 20 umol per liter (P replete) and 0.5 umol per liter (P limited). A total of six different phosphate and CO2 conditions were used in this study: 20 umol per liter P and ~22 Pa CO2; 20 umol per liter P and ~41 Pa CO2; 20 umol per liter P and ~74 Pa CO2; 0.5 umol per liter P and ~22 Pa CO2; 0.5 umol per liter P and ~41 Pa CO2; and 0.5 umol per liter P and ~74 Pa CO2.</p>
<p><b>Carbonate buffer system measurements and pCO2 treatments</b><br />
The pH in each bottle was monitored daily using a high sensitivity microprocessor pH-meter (Orion EA 940), calibrated with pH 4, 7 and 10 buffer solutions. The relative precision of this instrument is ~0.01 and accuracy is ~0.03 pH units. For the analysis of total dissolved inorganic carbon (DIC), DIC samples were stored in 2 mL capped borosilicate vials free of air bubbles and were preserved with 20 uL saturated HgCl2 per liter, and stored at 4 degrees C until analyzed. Total DIC was measured by acidifying 2-mL 10% of H3PO4 and quantifying the CO2 trapped in an acid sparging column (model CM 5230) with a carbon coulometer (model CM 140, UIC). Certified reference materials obtained from Andrew Dickson (University of California, San Diego, http://andrew.ucsd.edu/co2qc/index.html) were measured periodically during the run and used for calibration. pH values remained invariant before and after the dilution, suggesting that bubbling rates were sufficient to maintain the target CO2 equilibration levels in the medium, regardless of diel changes in photosynthesis and respiration. Based in the daily measurements of pH and DIC, pCO2 stabilized during the early part of the semi-continuous growth period and then remained steady throughout the latter part of the incubation period. Calculated pCO2 values (using CO2SYS; http://www.cdiac.ornl.gov/ftp/co2sys/CO2SYS_calc_XLS ) for the three CO2 treatments in both P treatments ranged from 22-23 Pa, 39-42 Pa, and 73-75 Pa (see table below where the numbers in parenthenses are the standard deviations of triplicate samples), very close to the certified standard gas mixture values. For convenience, these values were averaged and rounded to 22 Pa, 41 Pa, and 74 Pa when referring to the three pCO2 treatments throughout the dataset and paper (Sun et al. 2011).</p>
<p><b>Treatment conditions and calculated pCO2:</b><br />
<table cellspacing="0" cellpadding="2" border="1">
<tbody>
<tr>
<td>Treatment</td>
<td>Measured pH (sd)</td>
<td>Measured DIC (sd); umol/L</td>
<td>Calculated CO2 (sd); umol/L</td>
<td>Calculated pCO2 (sd); Pa</td>
</tr>
<tr>
<td>P-limited, 22 Pa</td>
<td>8.38 (0.05)</td>
<td>1917 (38)</td>
<td>7.4 (0.6)</td>
<td>23 (2)</td>
</tr>
<tr>
<td>P-limited, 41 Pa</td>
<td>8.15 (0.02)</td>
<td>2029 (8)</td>
<td>13.9 (0.7)</td>
<td>42 (2)</td>
</tr>
<tr>
<td>P-limited, 74 Pa</td>
<td>7.94 (0.01)</td>
<td>2145 (9)</td>
<td>24.5 (0.6)</td>
<td>75 (2)</td>
</tr>
<tr>
<td>P-replete, 22 Pa</td>
<td>8.40 (0.03)</td>
<td>1970 (4)</td>
<td>7.1 (0.5)</td>
<td>22 (2)</td>
</tr>
<tr>
<td>P-replete, 41 Pa</td>
<td>8.19 (0.02)</td>
<td>2066 (11)</td>
<td>12.8 (0.8)</td>
<td>40 (3)</td>
</tr>
<tr>
<td>P-replete, 74 Pa</td>
<td>7.96 (0.01)</td>
<td>2177 (6)</td>
<td>23.9 (0.4)</td>
<td>73 (1)</td>
</tr>
</tbody>
</table>
</p>
<p><b>Analysis of POC, PON, POP and BSi</b><br />
Samples for the analysis of particulate organic carbon (POC) and particulate organic nitrogen (PON) were collected on precombusted GF/F glass fiber filters (450 degrees C for 5 hr) under low vacuum and dried at 55 degrees C. The samples were then analyzed on an Elemental Analyzer (Costech Instruments, model 4010). Particulate organic phosphorus (POP) was measured followed by the protocol in Fu et al. (2005). Cellular biogenic silica (BSi) was analyzed according to the spectrophotometric method of Brzezinski and Nelson (1995).</p>
<p><b>Analysis of domoic acid concentrations</b><br />
Particulate and dissolved domoic acid was measured using amnesic shellfish poison (ASP) enzyme-linked immunosorbent assay (ELISA) kits available from Biosense Laboratories. Particulate domoic acid samples were collected on uncombusted Whatman GF/F filters and frozen at &ndash;20 degrees C until analyzed. The filtrate from each sample was also collected, frozen and later analyzed for dissolved DA. Sample preparation and ELISA tests were carried out following the protocol of Biosense Laboratories (2005 version). The limit of detection for the ELISA method for particulate DA is 6.8 ng per liter. Total DA produced per cell (including the sum of both particulate and dissolved DA) was calculated by dividing the DA content of the whole-culture sample by the cell density.</p>
<p><b>References:</b><br />
<b>Brzezinski</b>, M. A., and D. M. Nelson. 1995. The annual silica cycle in the Sargasso Sea near Bermuda. Deep-Sea Res. I. 42: 1215-1237, doi:<a target="_blank" href="http://www.sciencedirect.com/science/article/pii/0967063795935923">10.1016/0967-0637(95)93592-3</a><br />
<b>Fu</b>, F-X., Y. Zhang, K. Leblanc, S. A. Sa&ntilde;udo-Wilhelmy, and D.A. Hutchins. 2005. The biological and biogeochemical consequences of phosphate scavenging onto phytoplankton cell surfaces. Limnol. Oceanogr. 50: 1459-1472, doi: <a target="_blank" href="http://www.aslo.org/lo/toc/vol_50/issue_5/1459.html">10.4319/lo.2005.50.5.1459</a><br />
<b>Platt</b>, T., C. L. Gallegos, and W. G. Harrison. 1980. Photoinhibition of photosynthesis in natural assemblages of marine phytoplankton. J. Mar. Res. 38: 687-701.</p>
Specified by the Principal Investigator(s)
<p>Values reported are the means of triplicate samples.</p>
<p>BCO-DMO merged data submitted as 3 separate tables into one dataset. Parameter names were modified to conform with BCO-DMO conventions.</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
CHN Elemental Analyzer
CHN Elemental Analyzer
PI Supplied Instrument Name: CHN Elemental Analyzer PI Supplied Instrument Description:A Costech Instruments model 4010 elemental analyzer was used in measuring POC and PON. Instrument Name: CHN Elemental Analyzer Instrument Short Name:CHN_EA Instrument Description: A CHN Elemental Analyzer is used for the determination of carbon, hydrogen, and nitrogen content in organic and other types of materials, including solids, liquids, volatile, and viscous samples.
CO2 Coulometer
CO2 Coulometer
PI Supplied Instrument Name: CO2 Coulometer PI Supplied Instrument Description:A model CM 140 (UIC) carbon coulometer was used to measure total DIC. Instrument Name: CO2 Coulometer Instrument Short Name:CO2 coulometer Instrument Description: A CO2 coulometer semi-automatically controls the sample handling and extraction of CO2 from seawater samples. Samples are acidified and the CO2 gas is bubbled into a titration cell where CO2 is converted to hydroxyethylcarbonic acid which is then automatically titrated with a coulometrically-generated base to a colorimetric endpoint. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/LAB12
Fluorescence Microscope Image Analysis System
Fluorescence Microscope Image Analysis System
PI Supplied Instrument Name: Fluorescence Microscope Image Analysis System PI Supplied Instrument Description:Cells were enumerated using an Olympus BX51 epifluorescence microscope at 100-fold magnification. Instrument Name: Fluorescence Microscope Image Analysis System Instrument Short Name: Instrument Description: A Fluorescence (or Epifluorescence) Microscope Image Analysis System uses semi-automated color image analysis to determine cell abundance, dimensions and biovolumes from an Epifluorescence Microscope. An Epifluorescence Microscope (conventional and inverted) includes a camera system that generates enlarged images of prepared samples. The microscope uses excitation ultraviolet light and the phenomena of fluorescence and phosphorescence instead of, or in addition to, reflection and absorption of visible light. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/LAB06/
Deployment: lab_Fu
lab_Fu
USC
laboratory
lab_Fu
Feixue Fu
University of Southern California
USC
laboratory