http://lod.bco-dmo.org/id/dataset/3783
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2012-11-17
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Gene expression data from SFSU RTC Carpenter lab, 2012 results (En-Gen OA and E huxleyi project)
2012-11-17
publication
2012-11-17
revision
BCO-DMO Linked Data URI
2012-11-17
creation
http://lod.bco-dmo.org/id/dataset/3783
Edward J. Carpenter
San Francisco State University
principalInvestigator
Jonathon Stillman
San Francisco State University
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Carpenter, E. J., Stillman, J. (2012) Gene expression data from SFSU RTC Carpenter lab, 2012 results (En-Gen OA and E huxleyi project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 17 November 2012) Version Date 2012-11-17 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/3783 [access date]
Gene expression data Dataset Description: <p>Gene expression data will be deposited at NCBI <a href="http://www.ncbi.nlm.nih.gov/geo/info/seq.html">(http://www.ncbi.nlm.nih.gov/geo/info/seq.html</a>), Assembly Data with GenBank TSA (<a href="http://www.ncbi.nlm.nih.gov/genbank/tsa">http://www.ncbi.nlm.nih.gov/genbank/tsa</a>), and NCBI BioProject portal (<a href="http://www.ncbi.nlm.nih.gov/bioproject/182373" style="font-family: Arial; font-size: 11pt; ">http://www.ncbi.nlm.nih.gov/bioproject/182373</a>).<br />
&nbsp;</p>
<div nuan_tabactive="true" id="nuan_ria_plugin"><invalidtag style="position:absolute;z-index:1000" type="application/x-dgnria" id="plugin0" height="0" width="0">
<param value="ff-tab-0" name="tabId" />
<param value="18" name="counter" /></invalidtag></div> Methods and Sampling: <div nuan_tabactive="true" id="nuan_ria_plugin"><invalidtag style="position:absolute;z-index:1000" type="application/x-dgnria" id="plugin0" height="0" width="0">
<param value="ff-tab-0" name="tabId" />
<param value="20" name="counter" /></invalidtag></div>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-0723908 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=0723908
onGoing
Edward J. Carpenter
San Francisco State University
(415) 338-3732
SFSU Romberg Tiburon Center 3152 Paradise Drive
Tiburon
CA
94920
ecarpent@sfsu.edu
pointOfContact
Jonathon Stillman
San Francisco State University
pointOfContact
asNeeded
Dataset Version: 17 November 2012
Unknown
lab_Carpenter_En-Gen
service
Deployment Activity
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Ocean Carbon and Biogeochemistry
http://us-ocb.org/
Ocean Carbon and Biogeochemistry
The Ocean Carbon and Biogeochemistry (OCB) program focuses on the ocean's role as a component of the global Earth system, bringing together research in geochemistry, ocean physics, and ecology that inform on and advance our understanding of ocean biogeochemistry. The overall program goals are to promote, plan, and coordinate collaborative, multidisciplinary research opportunities within the U.S. research community and with international partners. Important OCB-related activities currently include: the Ocean Carbon and Climate Change (OCCC) and the North American Carbon Program (NACP); U.S. contributions to IMBER, SOLAS, CARBOOCEAN; and numerous U.S. single-investigator and medium-size research projects funded by U.S. federal agencies including NASA, NOAA, and NSF.
The scientific mission of OCB is to study the evolving role of the ocean in the global carbon cycle, in the face of environmental variability and change through studies of marine biogeochemical cycles and associated ecosystems.
The overarching OCB science themes include improved understanding and prediction of: 1) oceanic uptake and release of atmospheric CO2 and other greenhouse gases and 2) environmental sensitivities of biogeochemical cycles, marine ecosystems, and interactions between the two.
The OCB Research Priorities (updated January 2012) include: ocean acidification; terrestrial/coastal carbon fluxes and exchanges; climate sensitivities of and change in ecosystem structure and associated impacts on biogeochemical cycles; mesopelagic ecological and biogeochemical interactions; benthic-pelagic feedbacks on biogeochemical cycles; ocean carbon uptake and storage; and expanding low-oxygen conditions in the coastal and open oceans.
OCB
largerWorkCitation
program
En-Gen: A functional genomic analysis of how a major calcifying phytoplankter responds to ocean acidification predicted for the end of the century
https://osprey.bco-dmo.org/project/2246
En-Gen: A functional genomic analysis of how a major calcifying phytoplankter responds to ocean acidification predicted for the end of the century
<p>The coccolithophore <i>Emiliania huxleyi</i> is the most abundant calcifying phytoplankton species in the world&aposs oceans. Due to its abundance and broad range of occurrence, deep-sea export of its CaC03 coccoliths plays a significant role in the oceans alkalinity balance, and in turn, air-sea CO2 exchange. Since the start of the industrial age, atmospheric partial pressure of CO2 (pCO2) has steadily increased due to fossil fuel combustion and land use change, and is projected to reach 750 ppm by the end of this century. As a consequence, both seawater pH and carbonate ion concentration are expected to drop significantly relative to pre-industrial times. Calcifying organisms are sensitive to changes in carbonate ion concentration, however, neither the extent of this sensitivity, nor its physiological basis, are well understood. The purpose of this project is to examine the mechanism (s) by which <i>E. huxleyi</i> physiologically acclimates and adapts to changes in its environment in order to understand the impact of changes in seawater carbonate chemistry on this important planktonic calcifying organism. Cells from two genetically distinct ecotypes will be cultured in chemostats at present day and projected year 2100 levels of pCO2 under nitrogen or phosphorus limitation. Both short- (2 week) and long-term (2 year) experiments will be conducted to investigate acclimation and adaptation responses to changes in carbonate chemistry, respectively. In each experiment, patterns of gene expression will be investigated using a microarray that has been developed by the <i>E. huxleyi</i> genome sequencing projects. Gene expression will be analyzed as a function of physiological performance (photosynthesis vs. irradiance), calcification rates and cellular nutrient content. The results of this project will generate a novel set of candidate biomarker genes for analysis of the environmental physiology of coccolithophorids and contribute to a better prediction of the role of <i>E. huxleyi</i> in air-sea CO2 exchange in the next century. Since <i>E. huxleyi</i> is a globally distributed organism that frequently forms massive blooms, there are numerous investigators studying it and this research will therefore be of broad interest to the scientific community.</p>
En-Gen OA and E huxleyi
largerWorkCitation
project
eng; USA
oceans
2012-11-17
0
BCO-DMO catalogue of parameters from Gene expression data from SFSU RTC Carpenter lab, 2012 results (En-Gen OA and E huxleyi project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
https://osprey.bco-dmo.org/dataset/3783/data/download
download
onLine
dataset
<div nuan_tabactive="true" id="nuan_ria_plugin"><invalidtag style="position:absolute;z-index:1000" type="application/x-dgnria" id="plugin0" height="0" width="0">
<param value="ff-tab-0" name="tabId" />
<param value="20" name="counter" /></invalidtag></div>
Specified by the Principal Investigator(s)
<div nuan_tabactive="true" id="nuan_ria_plugin"><invalidtag style="position:absolute;z-index:1000" type="application/x-dgnria" id="plugin0" height="0" width="0">
<param value="ff-tab-0" name="tabId" />
<param value="21" name="counter" /></invalidtag></div>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Deployment: lab_Carpenter_En-Gen
lab_Carpenter_En-Gen
SFSU RTC
laboratory
SFSU RTC
laboratory