http://lod.bco-dmo.org/id/dataset/3787
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2012-11-20
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
LOPC data: microplankton size spectra from 0.1 to 35 mm from R/V Pelican PE08-54, PE09-12, PE10-01 in the Northwest Florida shelf off Panama City FL. from 2008-2009 (BenDiM project)
2012-12-12
publication
2012-12-12
revision
BCO-DMO Linked Data URI
2012-12-12
creation
http://lod.bco-dmo.org/id/dataset/3787
Daniel Kamykowski
North Carolina State University - Marine, Earth and Atmospheric Sciences
principalInvestigator
John M. Morrison
University of North Carolina - Wilmington
principalInvestigator
Carrie Thomas
North Carolina State University - Marine, Earth and Atmospheric Sciences
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Kamykowski, D., Morrison, J. M., Thomas, C. (2012) LOPC data: microplankton size spectra from 0.1 to 35 mm from R/V Pelican PE08-54, PE09-12, PE10-01 in the Northwest Florida shelf off Panama City FL. from 2008-2009 (BenDiM project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). Version Date 2012-12-12 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/3787 [access date]
LOPC data: microplankton size spectra from 0.1 to 35 mm Dataset Description: <p>Data consists of particle counts and sizes from 0.1 mm to 35 mm measured using a Brooke Ocean Technology Laser Optical Plankton Counter (LOPC). The LOPC was deployed on a CTD during a cross-shelf transect.</p>
<div><b>Related references: </b></div>
<div>Laser Optical Plankton Counter Operation and Maintenance Manual. 2010. Brooke Ocean Technology (<a href="http://www.brooke-ocean.com/"><font color="#0000ff"><u>www.brooke-ocean.com</u></font></a>).</div>
<div>&nbsp;</div>
<div>Herman AW. LOPC post-processing page: <a href="http://www.alexherman.com/lopc_post.php"><font color="#0000ff"><u>http://www.alexherman.com/lopc_post.php</u></font></a>. Contains software designed to enable first-time users of the LOPC to process data.</div>
<div>&nbsp;</div>
<div>Herman AW, M Harvey. 2006. Application of normalized biomass size spectra to laser optical plankton counter net intercomparisons of zooplankton distributions. Journal of Geophysical Research-Oceans. 111(C5): C05S05.</div>
<div>&nbsp;</div>
<div>Herman AW, B Beanlands, EF Phillips. 2004. The next generation of Optical Plankton Counter: the Laser-OPC. Journal of Plankton Research. 26(10): 1135-1145.</div>
<div>&nbsp;</div> Methods and Sampling: <p>Underway SeaSciences Acrobat surveys with the instrument package undulating through the water column between the 25-60 m isobaths provided near-surface to near-bottom (5-10 m off bottom inside the 40 m isobath and 10-20 m off bottom beyond the 40 m isobath) surveys.</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-0726271 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=0726271
completed
Daniel Kamykowski
North Carolina State University - Marine, Earth and Atmospheric Sciences
919-515-7894
1125 Jordan Hall
Raleigh
NC
27695-8208
dkamyko@ncsu.edu
pointOfContact
John M. Morrison
University of North Carolina - Wilmington
910-962-2304
Center for Marine Science 5600 Marvin K. Moss Lane
Wilmington
NC
28409
USA
morrisonj@uncw.edu
pointOfContact
Carrie Thomas
North Carolina State University - Marine, Earth and Atmospheric Sciences
919-515-7839
1125 Jordan Hall
Raleigh
NC
carrie_thomas@ncsu.edu
pointOfContact
asNeeded
Unknown
time_elapsed
distance
lat
lon
depth
press
temp
potemp
cond
sal
sigma_0
O2
O2_sat_pcnt
turbidity
chla
CDOM
biomass
vol_x_y_um
Laser Optical Plankton Counter
towed undulating vehicle
theme
None, User defined
time_elapsed
No BCO-DMO term
latitude
longitude
depth
water pressure
water temperature at measurement depth
potential temperature
conductivity
salinity
sigma-theta
dissolved Oxygen
Dissolved oxygen (percent)
turbidity
chlorophyll a
colored or chromophoric dissolved organic matter
wet_weight_biomass
featureType
BCO-DMO Standard Parameters
Laser Optical Plankton Counter
towed undulating vehicle
instrument
BCO-DMO Standard Instruments
PE08-54
PE09-12
PE10-01
service
Deployment Activity
Northwest Florida shelf off Panama City FL.
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Benthic Dinoflagellate Migration: Occurrence and Processes
https://osprey.bco-dmo.org/project/2243
Benthic Dinoflagellate Migration: Occurrence and Processes
<p>Most applications of the standardized dinoflagellate diel vertical migration (DVM) hypothesis consider a surface goal in daylight and a subsurface nutrient goal at night because of the visibility of surface blooms. The sub-surface nutrient source, however, can be so deep that dinoflagellates are unable to reach the surface during a 12 h ascent. At least three literature reports document a sediment-oriented expression of an alternative DVM pattern characteristic of continental boundaries with wider, more gently sloping shelves that can yield high biomass, near-bottom dinoflagellate accumulations. The targeted dinoflagellate niche, here termed 'Benthic Dinoflagellate Migration' or 'BenDiM', is influenced by light and nutrient gradients but is unique in that a DVM exists between a nutrient source near or at the sediment-sea interface and a light intensity in the lower euphotic zone that supports a net increase in population size. The project specifically deals with: 1) the different dinoflagellate species that occupy the BenDiM niche on the continental shelf off Panama City, FL between the 60 m and 20 m contours between May and Nov; 2) the light acclimation, the nutrient uptake capabilities, and the behavioral patterns required of different dinoflagellate species that occupy the BenDiM niche; and, 3) the effect of representative physical water motion on the formation, transport and fate of the different BenDiM dinoflagellate species populations. The study includes: 1) a pelagic/benthic field program with three 7-day cruises during different months between May and Oct in 2008 and Jul 2009; 2) laboratory studies on the light, nutrient, and behavioral characteristics of BenDiM dinoflagellates that allow successful competition with near-bottom pelagic diatoms and the microphytobenthos; and 3) a physical-biological modeling study to plan, integrate and extend the field and laboratory results. The cruise program applies standard UNOLS ship capabilities extended with instrumentation that includes: 1) an Acrobat undulating system instrumented with SeaBird CTD-O2 system, Biospherical PAR, SeaPoint Chlorophyll and CDOM Fluorometers, Seapoint Turbidity, Satlantic ISUS Nitrate Sensor, Brooke-Oceans Laser Optical Plankton Counter, and General Oceanics Flow Meter with integrated GPS and echo sounding location system and a real-time graphical display of the collected data, 2) the FlowCAM, and 3) the autonomous vertical profiler (AVP). The laboratory effort applies a proven motion analysis system for studying dinoflagellate behavior and a well-developed mesocosm capability for studying dinoflagellate physiology, biochemistry, and behavior. The modeling effort builds on an existing, biologically intense modeling approach that incorporates parameterization of dinoflagellate physiology, biochemistry and behavior in a representative physical field.</p>
BenDiM
largerWorkCitation
project
eng; USA
oceans
Northwest Florida shelf off Panama City FL.
2012-12-12
Northwest Florida shelf off Panama City, FL
0
BCO-DMO catalogue of parameters from LOPC data: microplankton size spectra from 0.1 to 35 mm from R/V Pelican PE08-54, PE09-12, PE10-01 in the Northwest Florida shelf off Panama City FL. from 2008-2009 (BenDiM project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/30855.rdf
Name: time_elapsed
Units: seconds
Description: <p>Elapsed time since start of tow</p>
http://lod.bco-dmo.org/id/dataset-parameter/30856.rdf
Name: distance
Units: km
Description: <p>distance from start of tow</p>
http://lod.bco-dmo.org/id/dataset-parameter/30857.rdf
Name: lat
Units: decimal degrees
Description: <p>latitude; North is positive</p>
http://lod.bco-dmo.org/id/dataset-parameter/30858.rdf
Name: lon
Units: decimal degrees
Description: <p>longitude; East is positive</p>
http://lod.bco-dmo.org/id/dataset-parameter/30859.rdf
Name: depth
Units: meters
Description: <p>depth</p>
http://lod.bco-dmo.org/id/dataset-parameter/30860.rdf
Name: press
Units: decibars
Description: <p>pressure</p>
http://lod.bco-dmo.org/id/dataset-parameter/30861.rdf
Name: temp
Units: degrees Celsius
Description: <p>temperature</p>
http://lod.bco-dmo.org/id/dataset-parameter/30862.rdf
Name: potemp
Units: degrees Celsius
Description: <p>potential temperature</p>
http://lod.bco-dmo.org/id/dataset-parameter/30863.rdf
Name: cond
Units: Siemens/meter
Description: <p>conductivity</p>
http://lod.bco-dmo.org/id/dataset-parameter/30864.rdf
Name: sal
Units: dimensionless
Description: <p>salinity</p>
http://lod.bco-dmo.org/id/dataset-parameter/30865.rdf
Name: sigma_0
Units: dimensionless
Description: <p>potential density; sigma-theta</p>
http://lod.bco-dmo.org/id/dataset-parameter/30866.rdf
Name: O2
Units: milliliters/liter
Description: <p>dissolved oxygen</p>
http://lod.bco-dmo.org/id/dataset-parameter/30867.rdf
Name: O2_sat_pcnt
Units: %
Description: <p>saturation of oxygen</p>
http://lod.bco-dmo.org/id/dataset-parameter/30868.rdf
Name: turbidity
Units: FTU
Description: <p>Turbidity is the cloudiness or haziness of a fluid caused by individual particles. Formazin Turbidity Units (FTU). ISO refers to its units as FNU (Formazin Nephelometric Units)</p>
http://lod.bco-dmo.org/id/dataset-parameter/30869.rdf
Name: chla
Units: micrograms/liter
Description: <p>chlorophyll</p>
http://lod.bco-dmo.org/id/dataset-parameter/30870.rdf
Name: CDOM
Units: micrograms/liter
Description: <p>Colored dissolved organic matter (CDOM): The optically measurable component of the dissolved organic matter in water</p>
http://lod.bco-dmo.org/id/dataset-parameter/30871.rdf
Name: biomass
Units: micrometers/m^3
Description: <p>sum of biovolumes across all the size ranges</p>
http://lod.bco-dmo.org/id/dataset-parameter/30872.rdf
Name: vol_x_y_um
Units: micrometers/m^3
Description: <p>volume of particles in the size range from x to y calculated from the estimated spherical diameter (ESD)</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
416789843
https://datadocs.bco-dmo.org/file/R88Xy93SvQMWQJ/lopc.csv
lopc.csv
Primary data file for dataset ID 3787
download
https://osprey.bco-dmo.org/dataset/3787/data/download
download
onLine
dataset
<p>Underway SeaSciences Acrobat surveys with the instrument package undulating through the water column between the 25-60 m isobaths provided near-surface to near-bottom (5-10 m off bottom inside the 40 m isobath and 10-20 m off bottom beyond the 40 m isobath) surveys.</p>
Specified by the Principal Investigator(s)
<p>Setup and Calibration Information for Acrobat TUV:<br />
<a href="http://bcodata.whoi.edu/BenDiM/BenDim01-CTD_Data_Calibration.pdf">BenDiM1/PE08-54</a><br />
<a href="http://bcodata.whoi.edu/BenDiM/BenDim02-CTD_Data_Calibration.pdf">BenDiM2/PE09-12</a><br />
<a href="http://bcodata.whoi.edu/BenDiM/BenDim03-CTD_Data_Calibration.pdf">BenDiM3/PE10-01</a></p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Laser Optical Plankton Counter
Laser Optical Plankton Counter
PI Supplied Instrument Name: Laser Optical Plankton Counter PI Supplied Instrument Description:A Brooke-Ocean Laser Optical Plankton Counter (LOPC) for plankton size spectra from 0.1 mm to 35 mm was deployed for and underway SeaSciences Acrobat surveys with the instrument package undulating through the water column between the 25-60 m isobaths provided near-surface to near-bottom (5-10 m off bottom inside the 40 m isobath and 10-20 m off bottom beyond the 40 m isobath) surveys.
Instrument Name: Laser Optical Plankton Counter Instrument Short Name:LOPC Instrument Description: Laser Optical Plankton Counter (LOPC) Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/352/
towed undulating vehicle
towed undulating vehicle
PI Supplied Instrument Name: towed undulating vehicle PI Supplied Instrument Description:SeaSciences Acrobat is a towed undulated vehicle (TUV) carrying an instrument package.
Cross-shelf survey were obtained using a SeaBird CTD package instrumented with SeaBird temperature, salinity, and dissolved oxygen sensors; SeaPoint chlorophyll and CDOM fluorescence and turbidity sensors; and a Brooke-Ocean Laser Optical Plankton Counter (LOPC) for plankton size spectra from 0.1 mm to 35 mm. Instrument Name: towed undulating vehicle Instrument Short Name:TUV Instrument Description: A towed undulating vehicle is a generic class of instruments. See the data set specific information for a detailed description. These are often prototype instrument packages designed to make very specific measurements.
Cruise: PE08-54
PE08-54
R/V Pelican
Community Standard Description
International Council for the Exploration of the Sea
R/V Pelican
vessel
PE08-54
Daniel Kamykowski
North Carolina State University - Marine, Earth and Atmospheric Sciences
Cruise: PE09-12
PE09-12
R/V Pelican
Community Standard Description
International Council for the Exploration of the Sea
R/V Pelican
vessel
PE09-12
Daniel Kamykowski
North Carolina State University - Marine, Earth and Atmospheric Sciences
Cruise: PE10-01
PE10-01
R/V Pelican
Community Standard Description
International Council for the Exploration of the Sea
R/V Pelican
vessel
PE10-01
Daniel Kamykowski
North Carolina State University - Marine, Earth and Atmospheric Sciences
R/V Pelican
Community Standard Description
International Council for the Exploration of the Sea
R/V Pelican
vessel