http://lod.bco-dmo.org/id/dataset/3875
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2013-02-11
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
CTD Profiles from R/V Knorr cruise KN207-03 in the North Atlantic (transect from Ponta Delgada, Azores to Reykjavik, Iceland) in 2012 (NA-VICE project)
2013-02-08
publication
2013-02-08
revision
BCO-DMO Linked Data URI
2013-02-08
creation
http://lod.bco-dmo.org/id/dataset/3875
Kay D. Bidle
Rutgers University
principalInvestigator
Giacomo DiTullio
College of Charleston
principalInvestigator
Benjamin A.S. Van Mooy
Woods Hole Oceanographic Institution
principalInvestigator
Marco Coolen
Woods Hole Oceanographic Institution
principalInvestigator
Assaf Vardi
Weizmann Institute of Science
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Bidle, K. D., DiTullio, G., Van Mooy, B. A., Vardi, A., Coolen, M. (2013) CTD Profiles from R/V Knorr cruise KN207-03 in the North Atlantic (transect from Ponta Delgada, Azores to Reykjavik, Iceland) in 2012 (NA-VICE project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 08 Feb 2013) Version Date 2013-02-08 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/3875 [access date]
CTD Profiles from cruise KN207-03 (NA-VICE). Dataset Description: <p>CTD data from a SeaBird 911+ collected during the KN207-03 cruise for the project 'Lipid lubrication of oceanic carbon and sulfur biogeochemistry via a host-virus chemical arms race'.</p> Methods and Sampling: <p>See the <a href="http://dmoserv3.whoi.edu/data_docs/LipidLubeCarbCycle/kn207_03_ctd_config-report.pdf" target="_blank">CTD Configuration Report</a> (PDF) and <a href="http://dmoserv3.whoi.edu/data_docs/LipidLubeCarbCycle/kn207_03_calibration_sheets.pdf" target="_blank">instrument calibration sheets</a> (PDF).</p>
<p>Note regarding the SUNA nitrate sensor: The SUNA was set to output volts on a 0-5V scale. The range was set to 0-20 uM (0V=0uM, 5V=20uM) for casts 1-17. On cast 18, the range was changed to 0-40 uM and stayed that way for the remainder of the cruise.</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1061883 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1061883
completed
Kay D. Bidle
Rutgers University
848-932-3467
Department of Marine and Coastal Sciences 71 Dudley Road
New Brunswick
NJ
08901
USA
bidle@marine.rutgers.edu
pointOfContact
Giacomo DiTullio
College of Charleston
843-953-9196
Hollings Marine Lab 205 Fort Johnson Rd.
Charleston
SC
29412
USA
ditullioj@cofc.edu
pointOfContact
Benjamin A.S. Van Mooy
Woods Hole Oceanographic Institution
(508) 289 2322
Department of Marine Chemistry and Geochemistry, MS #4, Fye 117 Woods Hole Oceanographic Institution
Woods Hole
MA
02543
USA
bvanmooy@whoi.edu
pointOfContact
Marco Coolen
Woods Hole Oceanographic Institution
508-289-2931
266 Woods Hole Rd. Fye 120A (MS# 04)
Woods Hole
MA
02543
USA
mcoolen@whoi.edu
pointOfContact
Assaf Vardi
Weizmann Institute of Science
Department of Plant Sciences P.O. Box 26,
Rehovot 76100
Israel
assaf.vardi@weizmann.ac.il
pointOfContact
asNeeded
Dataset Version: 08 Feb 2013
Unknown
cast
date
time_start
lat_start
lon_start
press
depth
temp
temp2
cond
cond2
sal
sal2
O2_v
O2
trans
beam_c
fluor
turbidity
par
spar
sigma_0
sigma_0_2
potemp
potemp2
sal_diff
temp_diff
cond_diff
O2sat
sound_vel
geopot_anom
nitrate_SUNA
ISO_DateTime_UTC
CTD Sea-Bird SBE 911plus
ISUS Nitrate sensor
theme
None, User defined
cast
date
time_start
latitude at start time of measurement
longitude at start time of measurement
water pressure
depth
water temperature at measurement depth
temperature (temp2) from secondary sensor
conductivity
conductivity from the CTD secondary sensor
salinity
salinity calculated from the CTD secondary sensors
Oxygen in volts
dissolved Oxygen
transmission
beam_c
fluorescence
turbidity
PAR
SPAR
sigma-theta
potential temperature
potemp2
sal_diff
No BCO-DMO term
O2 saturation
sound velocity
ISO_DateTime_UTC
featureType
BCO-DMO Standard Parameters
CTD Sea-Bird SBE 911plus
ISUS Nitrate sensor
instrument
BCO-DMO Standard Instruments
KN207-03
service
Deployment Activity
North Atlantic; transect from Ponta Delgada, Azores to Reykjavik, Iceland
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Ocean Carbon and Biogeochemistry
http://us-ocb.org/
Ocean Carbon and Biogeochemistry
The Ocean Carbon and Biogeochemistry (OCB) program focuses on the ocean's role as a component of the global Earth system, bringing together research in geochemistry, ocean physics, and ecology that inform on and advance our understanding of ocean biogeochemistry. The overall program goals are to promote, plan, and coordinate collaborative, multidisciplinary research opportunities within the U.S. research community and with international partners. Important OCB-related activities currently include: the Ocean Carbon and Climate Change (OCCC) and the North American Carbon Program (NACP); U.S. contributions to IMBER, SOLAS, CARBOOCEAN; and numerous U.S. single-investigator and medium-size research projects funded by U.S. federal agencies including NASA, NOAA, and NSF.
The scientific mission of OCB is to study the evolving role of the ocean in the global carbon cycle, in the face of environmental variability and change through studies of marine biogeochemical cycles and associated ecosystems.
The overarching OCB science themes include improved understanding and prediction of: 1) oceanic uptake and release of atmospheric CO2 and other greenhouse gases and 2) environmental sensitivities of biogeochemical cycles, marine ecosystems, and interactions between the two.
The OCB Research Priorities (updated January 2012) include: ocean acidification; terrestrial/coastal carbon fluxes and exchanges; climate sensitivities of and change in ecosystem structure and associated impacts on biogeochemical cycles; mesopelagic ecological and biogeochemical interactions; benthic-pelagic feedbacks on biogeochemical cycles; ocean carbon uptake and storage; and expanding low-oxygen conditions in the coastal and open oceans.
OCB
largerWorkCitation
program
Lipid lubrication of oceanic carbon and sulfur biogeochemistry via a host-virus chemical arms race
https://osprey.bco-dmo.org/project/2136
Lipid lubrication of oceanic carbon and sulfur biogeochemistry via a host-virus chemical arms race
<p>This project is also called "<strong>NA-VICE</strong>" (North Atlantic Virus Infection of Coccolithophores Expedition).</p>
<p><em>Project description from NSF award abstract:</em><br />
Despite the critical importance of viruses in shaping marine microbial ecosystems, very little is known about the molecular mechanisms mediating phytoplankton-virus interactions. As a consequence, we currently lack biomarkers to quantify active viral infection in the oceans, significantly hindering our understanding of its ecological and biogeochemical impacts.</p>
<p>The coccolithophore <em>Emiliania huxleyi</em> (Prymnesiophyceae, Haptophyte) is a cosmopolitan unicellular photoautotroph whose calcite skeletons account for about a third of the total marine CaCO3 production. <em>E. huxleyi</em> forms massive annual spring blooms in the North Atlantic that are infected and terminated by lytic, giant double-stranded DNA containing coccolithoviruses. Findings that lytic viral infection of <em>E. huxleyi</em> recruits the hosts programmed cell death (PCD) machinery demonstrate that viruses employ a sophisticated, co-evolutionary “arms race” in mediating host-virus interactions. The investigators recently demonstrated that viral glycosphingolipids (vGSLs), derived from unexpected cluster of sphingolipid biosynthetic genes, a pathway never before described in a viral genome, play a crucial functional role in facilitating infection of <em>E. huxleyi</em>. The observations of vGSLs in the North Atlantic and Norwegian fjords further suggest that they may be novel, diagnostic biomarkers for viral infection of coccolithophore populations. At the same time, the discovery of vGSLs and a distinct, protective 802 lipid argues that a host-virus, co-evolutionary chemical arms race plays a pivotal role in regulating viral infection and in lubricating upper ocean biogeochemical fluxes of carbon and sulfur.</p>
<p><strong>The focus of this collaborative research project is to elucidate the molecular, ecological, and biogeochemical links between vGSLs (and other polar lipids) and the global cycles of carbon and sulfur.</strong></p>
<p>The team of investigators proposes a multi-pronged approach combing a suite of lab-based, mechanistic studies using several haptophyte-virus model systems along with observational studies and manipulative field-based experiments the Northeast Atlantic. Using these diagnostic markers, they will document active viral infection of natural coccolithophore populations and couple it with a suite of oceanographic measurements in order to quantify how viral infection (via vGSLs) influences cell fate, the dissolved organic carbon (DOC) pool, vertical export of particular organic (POC) and inorganic carbon (PIC; as calcium carbonate, CaCO3) (along with associated alkenone lipid biomarkers and genetic signatures of viruses and their hosts) and the upper ocean sulfur cycle (via the cycling of dimethylsulfide [DMS] and other biogenic sulfur compounds). Furthermore, given they are unique to viruses, the investigators propose that vGSLs can be used to trace the flow of virally-derived carbon and provide quantitative insights into a “viral shunt” that diverts fixed carbon from higher trophic levels and the deep sea.</p>
<p><strong>The overarching hypothesis for this study is that vGSLs are cornerstone molecules in the upper ocean, which facilitate viral infection on massive scales and thereby mechanistically "lubricate" the biogeochemical fluxes of C and S in the ocean.</strong></p>
NA-VICE
largerWorkCitation
project
eng; USA
oceans
North Atlantic; transect from Ponta Delgada, Azores to Reykjavik, Iceland
2013-02-08
North Atlantic; Azores to Iceland
0
BCO-DMO catalogue of parameters from CTD Profiles from R/V Knorr cruise KN207-03 in the North Atlantic (transect from Ponta Delgada, Azores to Reykjavik, Iceland) in 2012 (NA-VICE project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/32907.rdf
Name: cast
Units: dimensionless
Description: <p>CTD cast number.</p>
http://lod.bco-dmo.org/id/dataset-parameter/32908.rdf
Name: date
Units: dimensionless
Description: <p>Date (GMT) of the CTD cast in YYYYmmdd format.</p>
http://lod.bco-dmo.org/id/dataset-parameter/32909.rdf
Name: time_start
Units: HHMMSS
Description: <p>Time (GMT) at start of the CTD cast in HHMMSS format (rounded to the nearest minute).</p>
http://lod.bco-dmo.org/id/dataset-parameter/32910.rdf
Name: lat_start
Units: decimal degrees
Description: <p>Latitude in decimal degrees at start of CTD cast; negative = South.</p>
http://lod.bco-dmo.org/id/dataset-parameter/32911.rdf
Name: lon_start
Units: decimal degrees
Description: <p>Longitude in decimal degrees at start of CTD cast; negative = West.</p>
http://lod.bco-dmo.org/id/dataset-parameter/32912.rdf
Name: press
Units: decibars
Description: <p>Water pressure, in decibars (db). (Originally named 'PrDM'.)</p>
http://lod.bco-dmo.org/id/dataset-parameter/32913.rdf
Name: depth
Units: meters
Description: <p>Sample depth. (Originally named 'DepSM'.)</p>
http://lod.bco-dmo.org/id/dataset-parameter/32914.rdf
Name: temp
Units: degrees C
Description: <p>Temperature in degrees Celsius. (Originally named 'T090C'.)</p>
http://lod.bco-dmo.org/id/dataset-parameter/32915.rdf
Name: temp2
Units: degrees C
Description: <p>Temperature (in degrees Celsius) measured by secondary sensor. (Originally named 'T190C'.)</p>
http://lod.bco-dmo.org/id/dataset-parameter/32916.rdf
Name: cond
Units: S/m
Description: <p>Conductivity measured in Siemens per meter. (Originally named 'C0S/m'.)</p>
http://lod.bco-dmo.org/id/dataset-parameter/32917.rdf
Name: cond2
Units: S/m
Description: <p>Conductivity (in Siemens per meter) measured by secondary sensor. (Originally named 'C1S/m'.)</p>
http://lod.bco-dmo.org/id/dataset-parameter/32918.rdf
Name: sal
Units: PSU
Description: <p>Salinity in practical salinity units, PSU. (Originally named 'Sal00'.)</p>
http://lod.bco-dmo.org/id/dataset-parameter/32919.rdf
Name: sal2
Units: PSU
Description: <p>Salinity in PSU measured by the secondary sensor. (Originally named 'Sal11'.)</p>
http://lod.bco-dmo.org/id/dataset-parameter/32920.rdf
Name: O2_v
Units: volts
Description: <p>Raw oxygen reading in volts from SBE43 sensor. (Originally named 'Sbeox0V'.)</p>
http://lod.bco-dmo.org/id/dataset-parameter/32921.rdf
Name: O2
Units: mL/L
Description: <p>Oxygen measured in milliLiters per Liter from SBE43 sensor. (Originally named 'Sbeox0ML/L'.)</p>
http://lod.bco-dmo.org/id/dataset-parameter/32922.rdf
Name: trans
Units: %
Description: <p>Beam transmission, as a percentage; from WET Labs CStar transmissometer. (Originally named 'Xmiss'.)</p>
http://lod.bco-dmo.org/id/dataset-parameter/32923.rdf
Name: beam_c
Units: 1/m
Description: <p>Beam attenuation; from WET Labs CStar transmissometer. (Originally named 'Bat'.)</p>
http://lod.bco-dmo.org/id/dataset-parameter/32924.rdf
Name: fluor
Units: mg/m^3
Description: <p>Fluorescence (in mg per cubic meter). (Originally named 'FlECO-AFL'.)</p>
http://lod.bco-dmo.org/id/dataset-parameter/32925.rdf
Name: turbidity
Units: NTU
Description: <p>Turbidity measured using a Wet Labs FLNTURTD combination fluorometer and tubidity sensor. (Originally named 'Upoly0'.)</p>
http://lod.bco-dmo.org/id/dataset-parameter/32926.rdf
Name: par
Units: umol photons per meter^2 per second
Description: <p>Irradiance (µmol photons m-2 s-1) measured by Biospherical Instruments PAR sensor.</p>
http://lod.bco-dmo.org/id/dataset-parameter/32927.rdf
Name: spar
Units: umol photons per meter^2 per second
Description: <p>Surface Irradiance (µmol photons m-2 s-1).</p>
http://lod.bco-dmo.org/id/dataset-parameter/32928.rdf
Name: sigma_0
Units: kg/m^3
Description: <p>Density (sigma-theta). (Originally named 'Sigma-e00'.)</p>
http://lod.bco-dmo.org/id/dataset-parameter/32929.rdf
Name: sigma_0_2
Units: kg/m^3
Description: <p>Density (sigma-theta) from secondary sensor. (Originally named 'Sigma-e11'.)</p>
http://lod.bco-dmo.org/id/dataset-parameter/32930.rdf
Name: potemp
Units: degrees C
Description: <p>Potential temperature in degrees Celsius; ITS-90. (Originally named 'Potemp090C'.)</p>
http://lod.bco-dmo.org/id/dataset-parameter/32931.rdf
Name: potemp2
Units: degrees C
Description: <p>Potential temperature in degrees Celsius; ITS-90 from secondary sensor. (Originally named 'Potemp190C'.)</p>
http://lod.bco-dmo.org/id/dataset-parameter/32932.rdf
Name: sal_diff
Units: PSU
Description: <p>Practical salinity difference; sal2 - sal. (Originally named 'SecS-priS'.)</p>
http://lod.bco-dmo.org/id/dataset-parameter/32933.rdf
Name: temp_diff
Units: degrees C
Description: <p>Temperature difference; temp2 - temp. (Originally named 'T2-T190C'.)</p>
http://lod.bco-dmo.org/id/dataset-parameter/32934.rdf
Name: cond_diff
Units: S/m
Description: <p>Conductivity difference; cond2 - cond. (Originally named 'C2-C1S/m'.)</p>
http://lod.bco-dmo.org/id/dataset-parameter/32935.rdf
Name: O2sat
Units: mL/L
Description: <p>Oxygen saturation in milliLiters per Liter; calculated using Garcia & Gordon method. (Originally named 'OxsolML/L'.)</p>
http://lod.bco-dmo.org/id/dataset-parameter/32936.rdf
Name: sound_vel
Units: m/s
Description: <p>Sound velocity measured in meters per second. (Originally named 'SvWM'.)</p>
http://lod.bco-dmo.org/id/dataset-parameter/32937.rdf
Name: geopot_anom
Units: J/kg
Description: <p>Geopotential anomaly measured in joules per kilogram. (Originally named 'Gpa'.)</p>
http://lod.bco-dmo.org/id/dataset-parameter/32938.rdf
Name: nitrate_SUNA
Units: volts
Description: <p>Output from SUNA Nitrate sensor. The sensor output is delivered to the CTD by 0 to +5V analog voltage to a dedicated port on the SBE9. The range was set to 0-20 uM (0V=0uM, 5V=20uM) for casts 1-17. On cast 18 the range was changed to 0-40 uM and stayed that way for the remainder of the cruise.(Originally named 'V6'.)</p>
http://lod.bco-dmo.org/id/dataset-parameter/32939.rdf
Name: ISO_DateTime_UTC
Units: YYYY-mm-ddTHH:MM:SS.ss
Description: <p>Starting date and time of cast formatted to ISO8601 standard. T indicates start of time string; Z indicates UTC.</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
6927137
https://datadocs.bco-dmo.org/file/wnnxNJgipA8vB/KN207-03_ctd.csv
KN207-03_ctd.csv
Primary data file for dataset ID 3875
download
https://osprey.bco-dmo.org/dataset/3875/data/download
download
onLine
dataset
<p>See the <a href="http://dmoserv3.whoi.edu/data_docs/LipidLubeCarbCycle/kn207_03_ctd_config-report.pdf" target="_blank">CTD Configuration Report</a> (PDF) and <a href="http://dmoserv3.whoi.edu/data_docs/LipidLubeCarbCycle/kn207_03_calibration_sheets.pdf" target="_blank">instrument calibration sheets</a> (PDF).</p>
<p>Note regarding the SUNA nitrate sensor: The SUNA was set to output volts on a 0-5V scale. The range was set to 0-20 uM (0V=0uM, 5V=20uM) for casts 1-17. On cast 18, the range was changed to 0-40 uM and stayed that way for the remainder of the cruise.</p>
Specified by the Principal Investigator(s)
<p>Raw data was processed using Seasave software version 7.21e.&nbsp; BCO-DMO retrieved the processed downcast data files on 18 Feb 2013 and made the following modifications:<br />
- Changed parameter names to conform to BCO-DMO conventions;<br />
- Converted latitude and longitude from degrees and decimal minutes to decimal degrees;<br />
- Added cast, date, time_start, lat_start, lon_start from the CTD file headers (time rounded to nearest minute);<br />
- Removed a duplicate depth parameter (second column named 'DepSM') and the flag column (all values were 0).</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
CTD Sea-Bird SBE 911plus
CTD Sea-Bird SBE 911plus
PI Supplied Instrument Name: CTD Sea-Bird SBE 911plus Instrument Name: CTD Sea-Bird SBE 911plus Instrument Short Name:CTD SBE 911plus Instrument Description: The Sea-Bird SBE 911 plus is a type of CTD instrument package for continuous measurement of conductivity, temperature and pressure. The SBE 911 plus includes the SBE 9plus Underwater Unit and the SBE 11plus Deck Unit (for real-time readout using conductive wire) for deployment from a vessel. The combination of the SBE 9 plus and SBE 11 plus is called a SBE 911 plus. The SBE 9 plus uses Sea-Bird's standard modular temperature and conductivity sensors (SBE 3 plus and SBE 4). The SBE 9 plus CTD can be configured with up to eight auxiliary sensors to measure other parameters including dissolved oxygen, pH, turbidity, fluorescence, light (PAR), light transmission, etc.). more information from Sea-Bird Electronics Community Standard Description: http://vocab.nerc.ac.uk/collection/L22/current/TOOL0058/
ISUS Nitrate sensor
ISUS Nitrate sensor
PI Supplied Instrument Name: ISUS Nitrate sensor PI Supplied Instrument Description:A SUNA nitrate sensor rated to 500-m depth was used (reported in the 'nitrate_SUNA' column). See the SUNA Manual (PDF). Instrument Name: ISUS Nitrate sensor Instrument Short Name:ISUS Nitrate Instrument Description: The Satlantic ISUS nitrate sensor is an in-situ UV absorption sensor which calculates nitrate concentration from the seawater spectrum. The ISUS V2 has a 1cm path length, a 200-400 nm wavelength range., and is depth rated to 1000 m. Satlantic's ISUS V3 nitrate sensor uses advanced UV absorption technology to measure nitrate concentration in real-time. Community Standard Description: http://vocab.nerc.ac.uk/collection/L22/current/TOOL0135/
Cruise: KN207-03
KN207-03
R/V Knorr
Community Standard Description
International Council for the Exploration of the Sea
R/V Knorr
vessel
KN207-03
Kay D. Bidle
Rutgers University
R/V Knorr
Community Standard Description
International Council for the Exploration of the Sea
R/V Knorr
vessel