http://lod.bco-dmo.org/id/dataset/4062
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2013-10-16
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Physical and geochemical measurements of water and sediments measured from a UNCW 20-ft Center Console Boat in the Cape Fear River Estuary, NC in 2009 (Estuarine ANAMMOX project)
2013-10-16
publication
2013-10-16
revision
BCO-DMO Linked Data URI
2013-10-16
creation
http://lod.bco-dmo.org/id/dataset/4062
Bongkeun Song
Virginia Institute of Marine Science
principalInvestigator
Professor Gregory O'Mullan
Queens College
principalInvestigator
Craig Tobias
University of Connecticut
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Song, B., O'Mullan, G., Tobias, C. (2013) Physical and geochemical measurements of water and sediments measured from a UNCW 20-ft Center Console Boat in the Cape Fear River Estuary, NC in 2009 (Estuarine ANAMMOX project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 16 Oct 2013) Version Date 2013-10-16 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/4062 [access date]
Physical and geochemical measurements of water and sediments in Cape Fear River Estuary. Dataset Description: <p>Physical and geochemical data measured in April and October of 2009 from the water column, porewater, and sediments of the Cape Fear River Estuary (located at the southeast of North Carolina; 34 N 78 W depth range 1 to 20 m).</p>
<p><b>NOTE: Data are restricted. Please contact the PI for access.</b></p>
<p>Related Publications and References:<br />
Hirsh, M.D., 2010, Anammox bacterial diversity in various environments and N removal capacity in the Cape Fear River. University of North Carolina Wilmington, Dept. of Biology and Marine Biology, M.S. thesis, 87 p.</p> Methods and Sampling: <p>Sampling for the Cape Fear River Estuary (CFRE) was conducted using 20-foot center console boats at University of North Carolina Wilmington (UNCW).</p>
<p>Fifteen stations were demarcated about every two kilometers along the estuarine salinity gradient of the CFRE. Sampling was conducted in April and October of 2009. Sediments were collected using a Petite Ponar&reg; grab from west to east along a cross-estuary transect at each station including, where possible, both banks (depth less than two meters) and both sides of the channel (~12 m). Samples were defined as either east or west bank (EB, WB) (0-2 m water column depth), east or west channel (EC, WC) (8-15 m), as well as east mid-bank (EMB), west bank-shore (WBS) and east bank-shore (EBS) at stations where more than 4 samples were collected. Salinity was measured with a YSI model 650 MDS (YSI Inc., Yellow Springs, OH, USA) in the field at the surface and at the bottom when depths were greater than 1 meter. Sediment samples were treated with 35% H2O2 until all organic matter was dissolved. Samples were then run on a Coulter Counter (model LS-200, Beckman) to measure the distribution of sediment grain sizes. Organic content was measured as a percentage of the ashed weight/pre-ashed weight. Fe (II) and H2S were measured spectrophotometrically from porewater that was fixed with ferrozine and/or diamine immediately after centrifugation the day after they were collected from the CFRE (Stookey, 1960, Cline, 1969). Filtered surface and bottom water was analyzed for NO3- and NH4+ with the standard colorimetric method using a Bran Lubbe continuous flow autoanalyzer.</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-0851435 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=0851435
onGoing
Bongkeun Song
Virginia Institute of Marine Science
804-684-7411
P.O Box 1346
Gloucester Point
VA
23692
USA
songb@vims.edu
pointOfContact
Professor Gregory O'Mullan
Queens College
718-997-3452
65-30 Kissena Blvd Science Building, Room D206
Queens
NY
11367-1575
USA
gregory.omullan@qc.cuny.edu
pointOfContact
Craig Tobias
University of Connecticut
860-405-9140
1080 Shennecossett Rd.
Groton
CT
06340
USA
craig.tobias@uconn.edu
pointOfContact
asNeeded
Dataset Version: 16 Oct 2013
Unknown
month
year
station
transect
lat
lon
sal_surf
NO3_surf
NH4_surf
sal_btm
NO3_btm
NH4_btm
Fe_pore
H2S_pore
NOx_pore
pcnt_H2O_sed
pcnt_org_sed
NH4_sed
grain_size_sed
Bottom Sediment Grab Samplers
Bran Luebbe AA3 AutoAnalyzer
Laser Diffraction Particle Size Analyzer
Spectrophotometer
YSI Sonde 6-Series
theme
None, User defined
month of year
year
station
transect
latitude
longitude
salinity
Nitrate
Ammonium
No BCO-DMO term
featureType
BCO-DMO Standard Parameters
Bottom Sediment Grab Samplers
Bran Luebbe AA3 AutoAnalyzer
Laser Diffraction Particle Size Analyzer
Spectrophotometer
YSI Sonde 6-Series
instrument
BCO-DMO Standard Instruments
CFRE_Song_2009
service
Deployment Activity
Cape Fear River Estuary, North Carolina
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Emerging Topics in Biogeochemical Cycles
http://www.nsf.gov/pubs/2007/nsf07049/nsf07049.jsp
Emerging Topics in Biogeochemical Cycles
The original call for proposals for Emerging Topics in Biogeochemical Cycles (ETBC) was issued in September 2007 by the US NSF Directorate for Geosciences (NSF 07-049).
The Geosciences Directorate (GEO) is substantially augmenting our past funding sources to explicitly support emerging areas of interdisciplinary research. We seek to foster transformational advances in our quantitative or mechanistic understanding of biogeochemical cycles that integrate physical-chemical-biological processes over the range of temporal and/or spatial scales in Earth’s environments. We encourage submission of proposals that address emerging topics in biogeochemical cycles, the water cycle or their coupling, across the interfaces of atmosphere, land, and oceans. Proposals must cross the disciplinary boundaries of two or more divisions in Geosciences (e.g. ATM, EAR, OCE) or of at least one division in Geosciences and a division in another NSF directorate.
Although funding programmatic disciplines continues to provide a robust and adaptable framework to build our understanding of the geosciences and the earth as a system, there are classes of emerging and challenging problems that require integration of concepts and observations across diverse fields. Our goal is to enhance such integration. Successful proposals need to develop intellectual excitement in the participating disciplinary communities. Also encouraged are proposals that have broader educational, diversity, societal, or infrastructure impacts that capitalize on this interdisciplinary opportunity.
ETBC
largerWorkCitation
program
Implication of ANAMMOX community structure and microbial interactions in estuarine N removal processes
https://osprey.bco-dmo.org/project/2285
Implication of ANAMMOX community structure and microbial interactions in estuarine N removal processes
<p><i>From NSF Award Abstract:</i></p>
<p>This award is funded under the American Recovery and Reinvestment Act of 2009 (Public Law 111-5).</p>
<p>Estuaries, connecting the freshwater and marine environment, are among the most dynamic and the productive ecosystems on Earth. However, they are under threat from anthropogenic N loading, resulting in various symptoms of eutrophication. The intensity and duration of estuarine eutrophication and the rate of estuarine recovery strongly depend on microbial N removal processes (anaerobic ammonium oxidation (ANAMMOX) and denitrification). Denitrification has been intensively studied in various estuaries, while ANAMMOX as a recently discovered N removal pathway is much less studied in estuarine ecosystems. Existing studies indicate that ANAMMOX rates and its contribution to total N2 production (ANAMMOX significance) are system specific and controlled in part by reaction-scale substrate limitations and by environmental parameters. However, community structure (abundance and composition) of ANAMMOX bacteria have not been linked to their activities along environmental gradients. In addition, ANAMMOX community interactions with aerobic ammonia oxidizers and denitrifyers have not been adequately studied in estuarine and coastal environments.</p>
<p>The investigators will examine the importance of ANAMMOX community structure on their activities along estuarine gradients at the CFRE. In addition, microbial interactions among ANAMMOX, denitrifying and aerobic ammonia oxidizing (AAO) communities will be examined to gain a better understanding of sedimentary N cycles in the estuary. They will address the hypothesis that the total abundance of ANAMMOX bacteria will be linearly correlated to their activities, and that members of ANAMMOX communities are influenced differently by environmental parameters present along the estuarine gradients. Depending on the community structure of ANAMMOX bacteria, temporal and spatial variations of the ANAMMOX rates and its significance to N loss will be observed along the estuary. In addition, they will explore functional linkages among ANAMMOX, denitrifying and AAO communities in estuarine sediments that will alter the pathway of N loss. In order to test the proposed hypotheses, the investigators will conduct interdisciplinary and collaborative research by integrating molecular microbial techniques, 15N isotope tracer methods and multivariate statistic analyses. Thus, this project will address key gaps in our understanding of ANAMMOX ecology by understanding how the community structure of ANAMMOX bacteria influences their activities, and lead to a more complete understanding of estuarine N loss.</p>
Estuarine ANAMMOX
largerWorkCitation
project
eng; USA
oceans
Cape Fear River Estuary, North Carolina
2013-10-16
0
BCO-DMO catalogue of parameters from Physical and geochemical measurements of water and sediments measured from a UNCW 20-ft Center Console Boat in the Cape Fear River Estuary, NC in 2009 (Estuarine ANAMMOX project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/36730.rdf
Name: month
Units: mm (01 to 12)
Description: <p>2-digit month when the sampling occurred.</p>
http://lod.bco-dmo.org/id/dataset-parameter/36731.rdf
Name: year
Units: YYYY
Description: <p>4-digit year when sampling occurred.</p>
http://lod.bco-dmo.org/id/dataset-parameter/36732.rdf
Name: station
Units: integer (1 to 15)
Description: <p>Station identification number.</p>
http://lod.bco-dmo.org/id/dataset-parameter/36733.rdf
Name: transect
Units: text
Description: <p>Transect identifier. EB = east bank; WB = west bank; EC = east channel; WC = west channel; EMB = east mid-bank; WBS = west bank-shore; EBS = east bank-shore.</p>
http://lod.bco-dmo.org/id/dataset-parameter/36734.rdf
Name: lat
Units: decimal degrees
Description: <p>Latitude of the sampling location. Positive values = North.</p>
http://lod.bco-dmo.org/id/dataset-parameter/36735.rdf
Name: lon
Units: decimal degrees
Description: <p>Longitude of the sampling location. Negative values = West.</p>
http://lod.bco-dmo.org/id/dataset-parameter/36736.rdf
Name: sal_surf
Units: psu
Description: <p>Salinity measured at the surface of the water column.</p>
http://lod.bco-dmo.org/id/dataset-parameter/36737.rdf
Name: NO3_surf
Units: micromolar (uM)
Description: <p>NO3- measured at the surface of the water column.</p>
http://lod.bco-dmo.org/id/dataset-parameter/36738.rdf
Name: NH4_surf
Units: micromolar (uM)
Description: <p>NH4+ measured at the surface of the water column.</p>
http://lod.bco-dmo.org/id/dataset-parameter/36739.rdf
Name: sal_btm
Units: psu
Description: <p>Salinity measured at the bottom (when depths were greater than 1 meter).</p>
http://lod.bco-dmo.org/id/dataset-parameter/36740.rdf
Name: NO3_btm
Units: micromolar (uM)
Description: <p>NO3- measured from the bottom of the water column.</p>
http://lod.bco-dmo.org/id/dataset-parameter/36741.rdf
Name: NH4_btm
Units: micromolar (uM)
Description: <p>NH4+ measured from the bottom of the water column.</p>
http://lod.bco-dmo.org/id/dataset-parameter/36742.rdf
Name: Fe_pore
Units: micromolar (uM)
Description: <p>Dissolved iron (Fe(II)) measured spectrophotometrically from porewater.</p>
http://lod.bco-dmo.org/id/dataset-parameter/36743.rdf
Name: H2S_pore
Units: micromolar (uM)
Description: <p>Hydrogen sulfide (H2S) measured spectrophotometrically from porewater.</p>
http://lod.bco-dmo.org/id/dataset-parameter/36744.rdf
Name: NOx_pore
Units: unknown
Description: <p>NOx measured from porewater.</p>
http://lod.bco-dmo.org/id/dataset-parameter/36745.rdf
Name: pcnt_H2O_sed
Units: % of wet weight
Description: <p>Sediment organic content measured as a percentage of the pre-ashed weight.</p>
http://lod.bco-dmo.org/id/dataset-parameter/36746.rdf
Name: pcnt_org_sed
Units: % of dry weight
Description: <p>Sediment organic content measured as a percentage of the ashed weight.</p>
http://lod.bco-dmo.org/id/dataset-parameter/36747.rdf
Name: NH4_sed
Units: micromoles N per gram (umol N g-1)
Description: <p>NH4+ in sediment.</p>
http://lod.bco-dmo.org/id/dataset-parameter/36748.rdf
Name: grain_size_sed
Units: micrometers (um)
Description: <p>Sediment grain size.</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
https://osprey.bco-dmo.org/dataset/4062/data/download
download
onLine
dataset
<p>Sampling for the Cape Fear River Estuary (CFRE) was conducted using 20-foot center console boats at University of North Carolina Wilmington (UNCW).</p>
<p>Fifteen stations were demarcated about every two kilometers along the estuarine salinity gradient of the CFRE. Sampling was conducted in April and October of 2009. Sediments were collected using a Petite Ponar&reg; grab from west to east along a cross-estuary transect at each station including, where possible, both banks (depth less than two meters) and both sides of the channel (~12 m). Samples were defined as either east or west bank (EB, WB) (0-2 m water column depth), east or west channel (EC, WC) (8-15 m), as well as east mid-bank (EMB), west bank-shore (WBS) and east bank-shore (EBS) at stations where more than 4 samples were collected. Salinity was measured with a YSI model 650 MDS (YSI Inc., Yellow Springs, OH, USA) in the field at the surface and at the bottom when depths were greater than 1 meter. Sediment samples were treated with 35% H2O2 until all organic matter was dissolved. Samples were then run on a Coulter Counter (model LS-200, Beckman) to measure the distribution of sediment grain sizes. Organic content was measured as a percentage of the ashed weight/pre-ashed weight. Fe (II) and H2S were measured spectrophotometrically from porewater that was fixed with ferrozine and/or diamine immediately after centrifugation the day after they were collected from the CFRE (Stookey, 1960, Cline, 1969). Filtered surface and bottom water was analyzed for NO3- and NH4+ with the standard colorimetric method using a Bran Lubbe continuous flow autoanalyzer.</p>
Specified by the Principal Investigator(s)
<p>BCO-DMO Processing Notes:<br />
- Parameter names were modified to conform with BCO-DMO naming conventions.<br />
- Latitude and longitude were converted from degrees and decimal minutes to decimal degrees.<br />
- &quot;N/A&quot; was replaced with &quot;nd&quot; to indicate &quot;no data/not available&quot;.<br />
- Blank values were replaced with &quot;nd&quot; to indicate &quot;no data&quot;.<br />
- &quot;b/d&quot; was replaced with &quot;below_det&quot; to indicate values below the detection limit.</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Bottom Sediment Grab Samplers
Bottom Sediment Grab Samplers
PI Supplied Instrument Name: Bottom Sediment Grab Samplers PI Supplied Instrument Description:A Petite Ponar® grab sampler was used to collect sediments. Instrument Name: Bottom Sediment Grab Samplers Instrument Short Name:BSGS Instrument Description: These samplers are designed to collect an accurate representative sample of the sediment bottom. The bite of the sampler should be deep enough so all depths are sampled equally. The closing mechanism is required to completely close and hold the sample as well as prevent wash-out during retrieval. Likewise, during descent the sampler should be designed to minimize disturbance of the topmost sediment by the pressure wave as it is lowered to the bottom. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/50/
Bran Luebbe AA3 AutoAnalyzer
Bran Luebbe AA3 AutoAnalyzer
PI Supplied Instrument Name: Bran Luebbe AA3 AutoAnalyzer PI Supplied Instrument Description:NO3- and NH4+ were determine with the standard colorimetric method using a Bran Lubbe continuous flow autoanalyzer. Instrument Name: Bran Luebbe AA3 AutoAnalyzer Instrument Short Name:Bran Luebbe AA3 AutoAnalyzer Instrument Description: Bran Luebbe AA3 AutoAnalyzer
See the description from the manufacturer. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/LAB04/
Laser Diffraction Particle Size Analyzer
Laser Diffraction Particle Size Analyzer
PI Supplied Instrument Name: Laser Diffraction Particle Size Analyzer PI Supplied Instrument Description:A Beckman model LS-200 was used to to measure the distribution of sediment grain sizes. See the description from the manufacturer. Instrument Name: Laser Diffraction Particle Size Analyzer Instrument Short Name: Instrument Description: Laser diffraction is particle sizing technique for materials ranging from hundreds of nanometers up to several millimeters in size. Laser diffraction measures particle size distributions by measuring the angular variation in intensity of light scattered as a laser beam passes through a dispersed particulate sample. One example is the Beckman Coulter LS200. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/150/
Spectrophotometer
Spectrophotometer
PI Supplied Instrument Name: Spectrophotometer PI Supplied Instrument Description:Fe (II) and H2S were measured spectrophotometrically from porewater. Instrument Name: Spectrophotometer Instrument Short Name:Spectrophotometer Instrument Description: An instrument used to measure the relative absorption of electromagnetic radiation of different wavelengths in the near infra-red, visible and ultraviolet wavebands by samples. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/LAB20/
YSI Sonde 6-Series
YSI Sonde 6-Series
PI Supplied Instrument Name: YSI Sonde 6-Series PI Supplied Instrument Description:A YSI model 650 MDS (YSI Inc., Yellow Springs, OH, USA) was used to measure salinity. See the description from the manufacturer. Instrument Name: YSI Sonde 6-Series Instrument Short Name:YSI Sonde 6-Series Instrument Description: YSI 6-Series water quality sondes and sensors are instruments for environmental monitoring and long-term deployments. YSI datasondes accept multiple water quality sensors (i.e., they are multiparameter sondes). Sondes can measure temperature, conductivity, dissolved oxygen, depth, turbidity, and other water quality parameters. The 6-Series includes several models. More from YSI. Community Standard Description: http://vocab.nerc.ac.uk/collection/L22/current/TOOL0737/
Cruise: CFRE_Song_2009
CFRE_Song_2009
UNCW 20-ft Center Console Boat
vessel
CFRE_Song_2009
Bongkeun Song
Virginia Institute of Marine Science
UNCW 20-ft Center Console Boat
vessel