http://lod.bco-dmo.org/id/dataset/471773
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2013-11-20
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Binned CTD data from R/V New Horizon cruise NH1106 in Guaymas in 2011 (Jumbo Squid Physiology project)
2025-02-25
publication
2025-02-25
revision
BCO-DMO Linked Data URI
2025-02-25
creation
http://lod.bco-dmo.org/id/dataset/471773
William Gilly
Stanford University
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Gilly, W. (2025) Binned CTD data from R/V New Horizon cruise NH1106 in Guaymas in 2011 (Jumbo Squid Physiology project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2025-02-25 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/471773 [access date]
Binned CTD data from NH1106 cruise. Dataset Description: <p>1-meter binned CTD data from 20 casts made during the NH1106 cruise in the Guaymas Basin. Data include figures of each cast (as PDF files) made using the Seabird SeaPlot program of SBE Data Processing.</p> Methods and Sampling: <p>See the <a href="http://dmoserv3.bco-dmo.org/data_docs/Jumbo_Squid/ctd01_header.txt" target="_blank">header file (.txt)</a> from CTD cast 01.</p>
<p><strong>Calibration Sheets (PDF files):</strong><br />
<a href="http://dmoserv3.bco-dmo.org/data_docs/Jumbo_Squid/ctd_calibration_sheets/032380_110517c_SBE3_primary_Temp_NH1106.pdf" target="_blank">primary temperature sensor (SBE3)</a><br />
<a href="http://dmoserv3.bco-dmo.org/data_docs/Jumbo_Squid/ctd_calibration_sheets/041919-110513c_SBE4_primary_Cond_NH1106.pdf" target="_blank">primary conductivity sensor (SBE4)</a><br />
<a href="http://dmoserv3.bco-dmo.org/data_docs/Jumbo_Squid/ctd_calibration_sheets/430185-110115c2_SBE43_Ox_NH1106.pdf" target="_blank">oxygen sensor (SBE43)</a><br />
<a href="http://dmoserv3.bco-dmo.org/data_docs/Jumbo_Squid/ctd_calibration_sheets/QSP23004644-20090929c_PAR_calib_NH1106.pdf" target="_blank">PAR sensor (Biospherical QSP-2300)</a></p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-0851239 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=0851239
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-0850839 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=0850839
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-0851043 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=0851043
completed
William Gilly
Stanford University
(831) 655-6219
Hopkins Marine Station of Stanford University 120 Oceanview Blvd.
Pacific Grove
CA
93950
United States
lignje@stanford.edu
pointOfContact
asNeeded
Dataset Version: 1
Unknown
cast
date_start_utc
time_start_utc
date_start_local
time_start_local
lat_start
lon_start
PDF_url
PDF_text
PDF
depth
temp
sal
O2_umol_kg
O2_sat_pcnt
time_elapsed
fluor
par
CTD SBE 911plus
theme
None, User defined
cast
No BCO-DMO term
time_start_local
latitude at start time of measurement
longitude at start time of measurement
file_link
depth
water temperature at measurement depth
salinity
dissolved Oxygen
Dissolved oxygen (percent)
time_elapsed
fluorescence
PAR
featureType
BCO-DMO Standard Parameters
CTD Sea-Bird SBE 911plus
instrument
BCO-DMO Standard Instruments
NH1106
service
Deployment Activity
Guaymas
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Hypoxia and the ecology, behavior and physiology of jumbo squid, Dosidicus gigas
https://osprey.bco-dmo.org/project/2279
Hypoxia and the ecology, behavior and physiology of jumbo squid, Dosidicus gigas
<p>This project concerns the ecological physiology of<em> Dosidicus gigas</em>, a large squid endemic to the eastern Pacific where it inhabits both open ocean and continental shelf environments. Questions to be addressed include:<br />
1) How does utilization of the OML by <em>D. gigas</em> vary on both a daily and seasonal basis, and how do the vertical distributions of the OML and its associated fauna vary?<br />
2) What behaviors of squid are impaired by conditions found in the OML, and how are impairments compensated to minimize costs of utilizing this environment? and<br />
3) What are the physiological and biochemical processes by which squid maintain swimming activity at such remarkable levels under low oxygen conditions?</p>
<p>The investigators will use an integrated approach involving oceanographic, acoustic, electronic tagging, physiological and biochemical methods. <em>D. gigas</em> provides a trophic connection between small, midwater organisms and top vertebrate predators, and daily vertical migrations between near-surface waters and a deep, low-oxygen environment (OML) characterize normal behavior of adult squid. Electronic tagging has shown that this squid can remain active for extended periods in the cold, hypoxic conditions of the upper OML. Laboratory studies have demonstrated suppression of aerobic metabolism during a cold, hypoxic challenge, but anaerobic metabolism does not appear to account for the level of activity maintained. Utilization of the OML in the wild may permit daytime foraging on midwater organisms. Foraging also occurs near the surface at night, and Dosidicus may thus be able to feed continuously. <em>D. gigas</em> is present in different regions of the Guaymas Basin on a predicable year-round basis, allowing changes in squid distribution to be related to changing oceanographic features on a variety time scales.</p>
<p>This research is of broad interest because <em>Dosidicus gigas</em> has substantially extended its range over the last decade, and foraging on commercially important finfish in invaded areas off California and Chile has been reported. In addition, the OML has expanded during the last several decades, mostly vertically by shoaling, including in the Gulf of Alaska, the Southern California Bight and several productive regions of tropical oceans, and a variety of ecological impacts will almost certainly accompany changes in the OML. Moreover,<em> D. gigas</em> currently supports the world's largest squid fishery, and this study will provide acoustic methods for reliable biomass estimates, with implications for fisheries management in Mexico and elsewhere.</p>
<p>This award is funded under the American Recovery and Reinvestment Act of 2009 (Public Law 111-5). This is a Collaborative Research project encompassing three NSF-OCE awards.</p>
<p><strong>Background Publications:</strong><br />
Stewart, J.S., Field, J.C., Markaida, U., and Gilly, W.F. 2013. Behavioral ecology of jumbo squid (<em>Dosidicus gigas</em>) in relation to oxygen minimum zones. Deep Sea Research Part II: Topical Studies in Oceanography, 95, 197-208. doi:<a href="http://dx.doi.org/10.1016/j.dsr2.2012.06.005" target="_blank">10.1016/j.dsr2.2012.06.005</a>.<br />
Gilly, W.F., Zeidberg, L.D., Booth, J.A.T, Stewart, J.S., Marshall, G., Abernathy, K., and Bell, L.E. 2012. Locomotion and behavior of Humboldt squid, <em>Dosidicus gigas</em>, in relation to natural hypoxia in the Gulf of California, Mexico. The Journal of Experimental Biology, 215, 3175-3190. doi: <a href="http://dx.doi.org/10.1242/jeb.072538" target="_blank">10.1242/jeb.072538</a>.</p>
<p>Related Project: <a href="http://www.bco-dmo.org/project/471887">Physiological limits to vertical migrations of the pelagic, jumbo squid, Dosidicus gigas in the Gulf of California</a></p>
Jumbo Squid Physiology
largerWorkCitation
project
eng; USA
oceans
Guaymas
2025-02-25
Guaymas Basin, Gulf of California, Mexico (27 N 112 W) and Monterey Bay, CA (36 N 123 W)
0
BCO-DMO catalogue of parameters from Binned CTD data from R/V New Horizon cruise NH1106 in Guaymas in 2011 (Jumbo Squid Physiology project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/471795.rdf
Name: cast
Units: dimensionless
Description: <p>Cast number.</p>
http://lod.bco-dmo.org/id/dataset-parameter/471796.rdf
Name: date_start_utc
Units: YYYYmmdd
Description: <p>Date (UTC) at start of cast.</p>
http://lod.bco-dmo.org/id/dataset-parameter/471797.rdf
Name: time_start_utc
Units: HHMM.xx
Description: <p>Time (UTC) at start of cast.</p>
http://lod.bco-dmo.org/id/dataset-parameter/471798.rdf
Name: date_start_local
Units: YYYYmmdd
Description: <p>Date (local time) at start of cast).</p>
http://lod.bco-dmo.org/id/dataset-parameter/471799.rdf
Name: time_start_local
Units: HHmm.xx
Description: <p>Time (local) at start of cast.</p>
http://lod.bco-dmo.org/id/dataset-parameter/471800.rdf
Name: lat_start
Units: decimal degrees
Description: <p>Latitude at start of cast. Positive = North.</p>
http://lod.bco-dmo.org/id/dataset-parameter/471801.rdf
Name: lon_start
Units: decimal degrees
Description: <p>Longitude at start of cast. Negative = West.</p>
http://lod.bco-dmo.org/id/dataset-parameter/954546.rdf
Name: PDF_url
Units: unitless
Description: <p>URL</p>
http://lod.bco-dmo.org/id/dataset-parameter/954547.rdf
Name: PDF_text
Units: unitless
Description: <p>text of the link</p>
http://lod.bco-dmo.org/id/dataset-parameter/471802.rdf
Name: PDF
Units: dimensionless
Description: <p>PDF file containing graph of temp, O2, sal, and fluor vs. depth from the CTD cast.</p>
http://lod.bco-dmo.org/id/dataset-parameter/471803.rdf
Name: depth
Units: meters
Description: <p>Depth; originally named 'depSM'.</p>
http://lod.bco-dmo.org/id/dataset-parameter/471804.rdf
Name: temp
Units: degrees Celsius (ITS-90)
Description: <p>Temperature from primary sensor (SBE3); originally named 't090C'.</p>
http://lod.bco-dmo.org/id/dataset-parameter/471805.rdf
Name: sal
Units: practical salinity units (PSU)
Description: <p>Salinity; originally named 'sal00'.</p>
http://lod.bco-dmo.org/id/dataset-parameter/471806.rdf
Name: O2_umol_kg
Units: micromoles per kilogram (umol/kg)
Description: <p>Oxygen from SBE43; originally named 'sbeox0Mm/Kg'.</p>
http://lod.bco-dmo.org/id/dataset-parameter/471807.rdf
Name: O2_sat_pcnt
Units: %
Description: <p>Percent saturation of oxygen from SBE43; originally named 'sbeox0PS'.</p>
http://lod.bco-dmo.org/id/dataset-parameter/471808.rdf
Name: time_elapsed
Units: seconds
Description: <p>Time elapsed since start of cast. Originally named 'timeS'.</p>
http://lod.bco-dmo.org/id/dataset-parameter/471809.rdf
Name: fluor
Units: micrograms per liter (ug/L)
Description: <p>Fluorescence from Seapoint fluorometer. Originally named 'flSP'. Range: 0-50 ug/L. Gain was set at 3X.</p>
http://lod.bco-dmo.org/id/dataset-parameter/471810.rdf
Name: par
Units: microEinsteins per square meter per second (uE/m2*sec)
Description: <p>PAR/irradiance from Biospherical QSP-2300.</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
7179534
https://datadocs.bco-dmo.org/file/VJVWrorFkNBPA6/ctd_NH1106.csv
ctd_NH1106.csv
download
https://osprey.bco-dmo.org/dataset/471773/data/download
download
onLine
dataset
<p>See the <a href="http://dmoserv3.bco-dmo.org/data_docs/Jumbo_Squid/ctd01_header.txt" target="_blank">header file (.txt)</a> from CTD cast 01.</p>
<p><strong>Calibration Sheets (PDF files):</strong><br />
<a href="http://dmoserv3.bco-dmo.org/data_docs/Jumbo_Squid/ctd_calibration_sheets/032380_110517c_SBE3_primary_Temp_NH1106.pdf" target="_blank">primary temperature sensor (SBE3)</a><br />
<a href="http://dmoserv3.bco-dmo.org/data_docs/Jumbo_Squid/ctd_calibration_sheets/041919-110513c_SBE4_primary_Cond_NH1106.pdf" target="_blank">primary conductivity sensor (SBE4)</a><br />
<a href="http://dmoserv3.bco-dmo.org/data_docs/Jumbo_Squid/ctd_calibration_sheets/430185-110115c2_SBE43_Ox_NH1106.pdf" target="_blank">oxygen sensor (SBE43)</a><br />
<a href="http://dmoserv3.bco-dmo.org/data_docs/Jumbo_Squid/ctd_calibration_sheets/QSP23004644-20090929c_PAR_calib_NH1106.pdf" target="_blank">PAR sensor (Biospherical QSP-2300)</a></p>
Specified by the Principal Investigator(s)
<p>1 m binning was carried out with SBE Data Processing. Oxygen was processed using tau and hysteresis corrections (as recommended by Seabird for the SBE43 sensor).</p>
<p>BCO-DMO Processing Notes: parameter names modified to conform with BCO-DMO naming conventions; removed 'flag' column (all values were 0).</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
CTD SBE 911plus
CTD SBE 911plus
PI Supplied Instrument Name: CTD SBE 911plus Instrument Name: CTD Sea-Bird SBE 911plus Instrument Short Name:CTD SBE 911plus Instrument Description: The Sea-Bird SBE 911 plus is a type of CTD instrument package for continuous measurement of conductivity, temperature and pressure. The SBE 911 plus includes the SBE 9plus Underwater Unit and the SBE 11plus Deck Unit (for real-time readout using conductive wire) for deployment from a vessel. The combination of the SBE 9 plus and SBE 11 plus is called a SBE 911 plus. The SBE 9 plus uses Sea-Bird's standard modular temperature and conductivity sensors (SBE 3 plus and SBE 4). The SBE 9 plus CTD can be configured with up to eight auxiliary sensors to measure other parameters including dissolved oxygen, pH, turbidity, fluorescence, light (PAR), light transmission, etc.). more information from Sea-Bird Electronics Community Standard Description: http://vocab.nerc.ac.uk/collection/L22/current/TOOL0058/
Cruise: NH1106
NH1106
R/V New Horizon
Community Standard Description
International Council for the Exploration of the Sea
R/V New Horizon
vessel
NH1106
Brad Seibel
University of Rhode Island
R/V New Horizon
Community Standard Description
International Council for the Exploration of the Sea
R/V New Horizon
vessel