http://lod.bco-dmo.org/id/dataset/472160
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2013-11-26
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Single Nucleotide Polymorphism (SNP) data from Palumbi laboratory at Stanford University Hopkins Marine Station from 2010 to 2013 (OMEGAS-MaS project)
2013-11-26
publication
2013-11-26
revision
BCO-DMO Linked Data URI
2013-11-26
creation
http://lod.bco-dmo.org/id/dataset/472160
Stephen R. Palumbi
Stanford University - Hopkins
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Palumbi, S. R. (2013) Single Nucleotide Polymorphism (SNP) data from Palumbi laboratory at Stanford University Hopkins Marine Station from 2010 to 2013 (OMEGAS-MaS project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 26 November 2013) Version Date 2013-11-26 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/472160 [access date]
Single Nucleotide Polymorphism (SNP) Dataset Description: <p>Single Nucleotide Polymorphism for each of the <em>Strongylocentrotus </em><em>purpuratus</em> genes from the GLEAN3 genome build.</p>
<p>Data structure: Fractions are allele frequency values. Location, Day samples (D1 or D7), and CO2 level (385 or 1000) are listed.</p>
<p>Data are for each of the <em>S. purpuratus</em> genes from the GLEAN3 genome build.</p>
<pre>
<strong>Parameter Names/Definitions:</strong>
GLEAN ID: ID code
POS: base position
Random trails larger than observed value (running record): no units
<em>Sample ID code format: State_Site_Tidal Height_:</em>
OR: Oregon
FC: Fogarty Creek Site
ST: Strawberry Hill
BD: Bodega Bay
NC: Northern California
VD: Van Damme
CC: Central California
SH: Sand Hill Bluff
TP: Terrace Point
SB: Santa Barbara region
AL: Alegria
</pre>
<p><strong>Resulting Publications:</strong><br />
2013. Pespeni, M. E. Sanford, B. Gaylord, T. M. Hill, J. D. Hosfelt, H. Jaris, M. LaVigne, E. Lenz, A. D. Russell, M. K. Young, S. R. Palumbi<sup>.</sup> Evolutionary change during experimental ocean acidification. Published online before print April 8, 2013, <a href="http://dx.doi.org/10.1073/pnas.1220673110">http://dx.doi.org/10.1073/pnas.1220673110</a></p>
<p>Pespeni MH, Barney BT, Palumbi SR (2012) Differences in the regulation of growth and biomineralization genes revealed through long-term common garden acclimation and experimental genomics in the purple sea urchin. Evolution 67(7): 1901–1914. <a href="http://dx.doi.org/10.1111/evo.12036">doi:10.1111/evo.12036</a></p> Methods and Sampling: <p>See resulting publications and <a href="http://sfg.stanford.edu/">http://sfg.stanford.edu/</a></p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1041222 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1041222
completed
Stephen R. Palumbi
Stanford University - Hopkins
831-655-6214
Hopkins Marine Station 120 Ocean View Blvd
Pacific Grove
CA
93950
USA
spalumbi@stanford.edu
pointOfContact
asNeeded
Dataset Version: 26 November 2013
Unknown
Lab_Id
Lat
Lon
GLEAN_ID
POS
Random_Trails
OR_FC_L_D1_0385_af
OR_FC_L_D7_0385_af
OR_FC_L_D1_1000_af
OR_FC_L_D7_1000_af
OR_ST_H_D1_0385_af
OR_ST_H_D7_0385_af
OR_ST_H_D1_1000_af
OR_ST_H_D7_1002_af
NC_BD_L_D1_0385_af
NC_BD_L_D7_0385_af
NC_BD_L_D1_1000_af
NC_BD_L_D7_1000_af
NC_VD_H_D1_0385_af
NC_VD_H_D7_0385_af
NC_VD_H_D1_1000_af
NC_VD_H_D7_1000_af
CC_SH_H_D1_0385_af
CC_SH_H_D7_0385_af
CC_SH_H_D1_1000_af
CC_SH_H_D7_1000_af
CC_TP_L_D1_0385_af
CC_TP_L_D7_0385_af
CC_TP_L_D1_1000_af
CC_TP_L_D7_1000_af
SB_AL_L_D1_0385_af
SB_AL_L_D7_0385_af
SB_AL_L_D1_1000_af
SB_AL_L_D7_1000_af
theme
None, User defined
laboratory
latitude
longitude
No BCO-DMO term
featureType
BCO-DMO Standard Parameters
Lab_Stanford_HMS_Palumbi
service
Deployment Activity
Hopkins Marine Station, Stanford University
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Science, Engineering and Education for Sustainability NSF-Wide Investment (SEES): Ocean Acidification (formerly CRI-OA)
https://www.nsf.gov/funding/pgm_summ.jsp?pims_id=503477
Science, Engineering and Education for Sustainability NSF-Wide Investment (SEES): Ocean Acidification (formerly CRI-OA)
NSF Climate Research Investment (CRI) activities that were initiated in 2010 are now included under Science, Engineering and Education for Sustainability NSF-Wide Investment (SEES). SEES is a portfolio of activities that highlights NSF's unique role in helping society address the challenge(s) of achieving sustainability. Detailed information about the SEES program is available from NSF (https://www.nsf.gov/funding/pgm_summ.jsp?pims_id=504707).
In recognition of the need for basic research concerning the nature, extent and impact of ocean acidification on oceanic environments in the past, present and future, the goal of the SEES: OA program is to understand (a) the chemistry and physical chemistry of ocean acidification; (b) how ocean acidification interacts with processes at the organismal level; and (c) how the earth system history informs our understanding of the effects of ocean acidification on the present day and future ocean.
Solicitations issued under this program:
NSF 10-530, FY 2010-FY2011
NSF 12-500, FY 2012
NSF 12-600, FY 2013
NSF 13-586, FY 2014
NSF 13-586 was the final solicitation that will be released for this program.
PI Meetings:
1st U.S. Ocean Acidification PI Meeting(March 22-24, 2011, Woods Hole, MA)
2nd U.S. Ocean Acidification PI Meeting(Sept. 18-20, 2013, Washington, DC)
3rd U.S. Ocean Acidification PI Meeting (June 9-11, 2015, Woods Hole, MA – Tentative)
NSF media releases for the Ocean Acidification Program:
Press Release 10-186 NSF Awards Grants to Study Effects of Ocean Acidification
Discovery Blue Mussels "Hang On" Along Rocky Shores: For How Long?
Discovery nsf.gov - National Science Foundation (NSF) Discoveries - Trouble in Paradise: Ocean Acidification This Way Comes - US National Science Foundation (NSF)
Press Release 12-179 nsf.gov - National Science Foundation (NSF) News - Ocean Acidification: Finding New Answers Through National Science Foundation Research Grants - US National Science Foundation (NSF)
Press Release 13-102 World Oceans Month Brings Mixed News for Oysters
Press Release 13-108 nsf.gov - National Science Foundation (NSF) News - Natural Underwater Springs Show How Coral Reefs Respond to Ocean Acidification - US National Science Foundation (NSF)
Press Release 13-148 Ocean acidification: Making new discoveries through National Science Foundation research grants
Press Release 13-148 - Video nsf.gov - News - Video - NSF Ocean Sciences Division Director David Conover answers questions about ocean acidification. - US National Science Foundation (NSF)
Press Release 14-010 nsf.gov - National Science Foundation (NSF) News - Palau's coral reefs surprisingly resistant to ocean acidification - US National Science Foundation (NSF)
Press Release 14-116 nsf.gov - National Science Foundation (NSF) News - Ocean Acidification: NSF awards $11.4 million in new grants to study effects on marine ecosystems - US National Science Foundation (NSF)
SEES-OA
largerWorkCitation
program
Partnership for Interdisciplinary Studies of Coastal Oceans
http://www.piscoweb.org/
Partnership for Interdisciplinary Studies of Coastal Oceans
The Partnership for Interdisciplinary Studies of Coastal Oceans is a long-term ecosystem research and monitoring program established with the goals of:
understanding dynamics of the coastal ocean ecosystem along the U.S. west coast
sharing that knowledge so ocean managers and policy makers can make science based decisions regarding coastal and marine stewardship
producing a new generation of scientists trained in interdisciplinary collaborative approaches
Over the last 10 years, PISCO has successfully built a unique research program that combines complementary disciplines to answer critical environmental questions and inform management and policy. Activities are conducted at the latitudinal scale of the California Current Large Marine Ecosystem along the west coast of North America, but anchored around the dynamics of coastal, hardbottom habitats and the oceanography of the nearshore ocean – among the most productive and diverse components of this ecosystem. The program integrates studies of changes in the ocean environment through ecological monitoring and experiments. Scientists examine the causes and consequences of ecosystem changes over spatial scales that are the most relevant to marine species and management, but largely unstudied elsewhere.
Findings are linked to solutions through a growing portfolio of tools for policy and management decisions. The time from scientific discovery to policy change is greatly reduced by coordinated, efficient links between scientists and key decision makers.
Core elements of PISCO are:
Interdisciplinary ecosystem science
Data archiving and sharing
Outreach to public and decision-making user groups
Interdisciplinary training
Coordination of distributed research team
Established in 1999 with funding from The David and Lucile Packard Foundation, PISCO is led by scientists from core campuses Oregon State University (OSU); Stanford University’s Hopkins Marine Station; University of California, Santa Cruz (UCSC); and University of California, Santa Barbara (UCSB). Collaborators from other institutions also contribute to leadership and development of PISCO programs. As of 2005, core PISCO activities are funded by collaborative grants from The David and Lucile Packard Foundation and the Gordon and Betty Moore Foundation. Core support, along with additional funding from diverse public and private sources, make this unique partnership possible.
PISCO
largerWorkCitation
program
OCEAN ACIDIFICATION - Category 1: COLLABORATIVE RESEARCH: Acclimation and adaptation to ocean acidification of key ecosystem components in the California Current System
http://omegas.science.oregonstate.edu
OCEAN ACIDIFICATION - Category 1: COLLABORATIVE RESEARCH: Acclimation and adaptation to ocean acidification of key ecosystem components in the California Current System
<p>In 2010-2012/13, the OMEGAS consortium is investigating the impact of ocean acidification (OA) on two ecologically important, calcification-dependent marine invertebrates (sea urchins <em>Strongylocentrotus purpuratus</em> and mussels <em>Mytilus californianus</em>) in relation to local-to-coastal variation in carbonate chemistry in the California Current Large Marine Ecosystem (CCLME). An interdisciplinary team of investigators with expertise in physical and chemical oceanography, marine ecology, biochemistry, molecular physiology, and molecular genetics carry out integrated, lab and field, multi-site investigations of the ecological, physiological, and evolutionary responses of sea urchins and mussels to spatial and temporal variation in OA.</p>
<p>The research takes place in the context of a mosaic of variable oceanography, including recently documented latitudinal variation in carbonate chemistry along the upwelling-dominated US west coast. Variation in upwelling regimes from Washington to southern California generates spatial and temporal gradients in concentration of CO2 that shoal to surface waters during upwelling events, extending shoreward into the inner shelf region. Because calcifiers in the upwelling-dominated CCLME probably have historically experienced wide fluctuation in pH, many likely are adapted to a variable carbonate chemistry environment. The new challenge to these organisms is that they may have limited ability to respond to additional increases in CO2. It is this challenge, the mechanistic ability of calcifying invertebrates to acclimate or adapt to increasing CO2 and aragonite saturation states < 1.0, that is addressed in this program.</p>
<p>Our research includes several integrated elements that span our three project areas (Moorings and sensors; Genomics, physiology, and larval rearing; and Field transplants and growth experiments):</p>
<p>(1) Document the oceanographic context in which the study organisms operate in four regions of the CCLME with contrasting upwelling regimes.</p>
<p>(2) Examine physiological, genomic, and genetic mechanisms underlying acclimatization and adaptation to OA conditions with coordinated and integrated studies of adults and larvae of sea urchins and mussels collected from each of two sites within each of the four regions. In common-garden experiments culture sea urchins and mussels, respectively, under different CO2 and temperature regimes, and use genomics techniques to determine the tolerance of larvae to present and future OA conditions. </p>
<p>(3) Determine evolutionary responses and adaptational potential to OA using genetic surveys of urchins and mussels across the 8 sites and relate detected variability to the oceanographic conditions.</p>
<p>(4) Examine ecological responses to OA with transplants of mussels and urchins in the field and monitor growth rates and shell accretion rates in relation to oceanographic and physical conditions.</p>
<p>The team will investigate the impact of ocean acidification (OA) on two ecological important, calcification-dependent marine invertebrates (sea urchins <em>Strongylocentrotus purpuratus</em> and mussels <em>Mytilus californianus</em>) in relation to local-to-coastal variation in carbonate chemistry in the California Current Large Marine Ecosystem (CCLME). An interdisciplinary team of investigators with expertise in physical and chemical oceanography, marine ecology, biochemistry, molecular physiology, and molecular genetics will carry out an integrated, lab and field, multi-site investigation of the ecological, physiological, and evolutionary responses of sea urchins and mussels to spatial and temporal variation in OA. The research will take place in the context of a mosaic of variable oceanography, including recently documented latitudinal variation in carbonate chemistry along the upwelling-dominated US west coast. Variation in upwelling regimes from Washington to southern California generates spatial and temporal gradients in concentration of CO2 that shoal to surface waters during upwelling events, extending shoreward into the inner shelf region. Because calcifiers in the upwelling-dominated CCLME probably have historically experienced wide fluctuation in pH, many likely are adapted to a variable carbonate chemistry environment. The new challenge to these organisms is that they may have limited ability to respond to additional increases in CO2. It is this challenge, the mechanistic ability of calcifying invertebrates to acclimate or adapt to increasing CO2 and decreasing carbonate mineral saturation state, that is addressed in this project.</p>
<p>The OMEGAS Moorings and Sensors team will document the oceanographic context in which the study organisms operate in four regions of the CCLME with contrasting upwelling regimesThis project also coordinates closely with other OMEGAS projects [(i) Genetics, physiology, larval rearing and (ii) Field transplants] to achieve goals of the project to determine acclimatization and adaptational capacity to present and future OA conditions .</p>
<p><strong>PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH</strong></p>
<p>Gaylord, B., T. M. Hill, E. Sanford, E. A. Lenz, L. A. Jacobs, K. N. Sato, A. D. Russell, and A. Hettinger. "Functional impacts of ocean acidification in an ecologically critical foundation species", <em>Journal of Experimental Biology</em>, v.214, 2011, p. 2586.</p>
<p>Howarth, R., F. Chan, D. J. Conley, S. C. Doney, R. Marino, and G. Billen. "Coupled biogeochemical cycles: eutrophication and hypoxia in temperate estuaries and coastal marine ecosystems", <em>Frontiers in Ecology and the Environment</em>, v.9, 2011, p. 18.</p>
<p>Yu, P. D., P. G. Matson, T. R. Martz, and G. E. Hofmann. "The ocean acidification seascape and its relationship to theperformance of calcifying marine invertebrates: laboratory experiments on the development of urchin larvae framed by environmentally-relevant pCO2/pH", <em>Journal of Experimental Marine Biology and Ecology</em>, v.400, 2011, p. 288.</p>
OMEGAS-MaS
largerWorkCitation
project
eng; USA
oceans
Hopkins Marine Station, Stanford University
2013-11-26
California Current Large Marine Ecosystem, Oregon, California
0
BCO-DMO catalogue of parameters from Single Nucleotide Polymorphism (SNP) data from Palumbi laboratory at Stanford University Hopkins Marine Station from 2010 to 2013 (OMEGAS-MaS project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/472436.rdf
Name: Lab_Id
Units: text
Description: <p>Lab Id – Lab identifier where experiments were conducted</p>
http://lod.bco-dmo.org/id/dataset-parameter/472437.rdf
Name: Lat
Units: decimal degrees
Description: <p>Approximate Latitude Position of Lab; South is negative</p>
http://lod.bco-dmo.org/id/dataset-parameter/472438.rdf
Name: Lon
Units: decimal degrees
Description: <p>Approximate Longitude Position of Lab; West is negative</p>
http://lod.bco-dmo.org/id/dataset-parameter/472439.rdf
Name: GLEAN_ID
Units: text
Description: <p>ID code</p>
http://lod.bco-dmo.org/id/dataset-parameter/472440.rdf
Name: POS
Units: dimensionless
Description: <p>Base Position</p>
http://lod.bco-dmo.org/id/dataset-parameter/472441.rdf
Name: Random_Trails
Units: dimensionless
Description: <p>Random trails larger than observed value (running record)</p>
http://lod.bco-dmo.org/id/dataset-parameter/472442.rdf
Name: OR_FC_L_D1_0385_af
Units: text
Description: <p>Allele frequency values for Sample Id: Location (State and Site); Day Sample (D1 or D7); CO2 Level (385 or 1000 in ppm)<br>See Metadata Dataset Description for key to State and Site</p>
http://lod.bco-dmo.org/id/dataset-parameter/472443.rdf
Name: OR_FC_L_D7_0385_af
Units: text
Description: <p>Allele frequency values for Sample Id: Location (State and Site); Day Sample (D1 or D7); CO2 Level (385 or 1000 in ppm)<br>See Metadata Dataset Description for key to State and Site</p>
http://lod.bco-dmo.org/id/dataset-parameter/472444.rdf
Name: OR_FC_L_D1_1000_af
Units: text
Description: <p>Allele frequency values for Sample Id: Location (State and Site); Day Sample (D1 or D7); CO2 Level (385 or 1000 in ppm)<br>See Metadata Dataset Description for key to State and Site</p>
http://lod.bco-dmo.org/id/dataset-parameter/472445.rdf
Name: OR_FC_L_D7_1000_af
Units: text
Description: <p>Allele frequency values for Sample Id: Location (State and Site); Day Sample (D1 or D7); CO2 Level (385 or 1000 in ppm)<br>See Metadata Dataset Description for key to State and Site</p>
http://lod.bco-dmo.org/id/dataset-parameter/472446.rdf
Name: OR_ST_H_D1_0385_af
Units: text
Description: <p>Allele frequency values for Sample Id: Location (State and Site); Day Sample (D1 or D7); CO2 Level (385 or 1000 in ppm)<br>See Metadata Dataset Description for key to State and Site</p>
http://lod.bco-dmo.org/id/dataset-parameter/472447.rdf
Name: OR_ST_H_D7_0385_af
Units: text
Description: <p>Allele frequency values for Sample Id: Location (State and Site); Day Sample (D1 or D7); CO2 Level (385 or 1000 in ppm)<br>See Metadata Dataset Description for key to State and Site</p>
http://lod.bco-dmo.org/id/dataset-parameter/472448.rdf
Name: OR_ST_H_D1_1000_af
Units: text
Description: <p>Allele frequency values for Sample Id: Location (State and Site); Day Sample (D1 or D7); CO2 Level (385 or 1000 in ppm)<br>See Metadata Dataset Description for key to State and Site</p>
http://lod.bco-dmo.org/id/dataset-parameter/472449.rdf
Name: OR_ST_H_D7_1002_af
Units: text
Description: <p>Allele frequency values for Sample Id: Location (State and Site); Day Sample (D1 or D7); CO2 Level (385 or 1000 in ppm)<br>See Metadata Dataset Description for key to State and Site</p>
http://lod.bco-dmo.org/id/dataset-parameter/472450.rdf
Name: NC_BD_L_D1_0385_af
Units: text
Description: <p>Allele frequency values for Sample Id: Location (State and Site); Day Sample (D1 or D7); CO2 Level (385 or 1000 in ppm)<br>See Metadata Dataset Description for key to State and Site</p>
http://lod.bco-dmo.org/id/dataset-parameter/472451.rdf
Name: NC_BD_L_D7_0385_af
Units: text
Description: <p>Allele frequency values for Sample Id: Location (State and Site); Day Sample (D1 or D7); CO2 Level (385 or 1000 in ppm)<br>See Metadata Dataset Description for key to State and Site</p>
http://lod.bco-dmo.org/id/dataset-parameter/472452.rdf
Name: NC_BD_L_D1_1000_af
Units: text
Description: <p>Allele frequency values for Sample Id: Location (State and Site); Day Sample (D1 or D7); CO2 Level (385 or 1000 in ppm)<br>See Metadata Dataset Description for key to State and Site</p>
http://lod.bco-dmo.org/id/dataset-parameter/472453.rdf
Name: NC_BD_L_D7_1000_af
Units: text
Description: <p>Allele frequency values for Sample Id: Location (State and Site); Day Sample (D1 or D7); CO2 Level (385 or 1000 in ppm)<br>See Metadata Dataset Description for key to State and Site</p>
http://lod.bco-dmo.org/id/dataset-parameter/472454.rdf
Name: NC_VD_H_D1_0385_af
Units: text
Description: <p>Allele frequency values for Sample Id: Location (State and Site); Day Sample (D1 or D7); CO2 Level (385 or 1000 in ppm)<br>See Metadata Dataset Description for key to State and Site</p>
http://lod.bco-dmo.org/id/dataset-parameter/472455.rdf
Name: NC_VD_H_D7_0385_af
Units: text
Description: <p>Allele frequency values for Sample Id: Location (State and Site); Day Sample (D1 or D7); CO2 Level (385 or 1000 in ppm)<br>See Metadata Dataset Description for key to State and Site</p>
http://lod.bco-dmo.org/id/dataset-parameter/472456.rdf
Name: NC_VD_H_D1_1000_af
Units: text
Description: <p>Allele frequency values for Sample Id: Location (State and Site); Day Sample (D1 or D7); CO2 Level (385 or 1000 in ppm)<br>See Metadata Dataset Description for key to State and Site</p>
http://lod.bco-dmo.org/id/dataset-parameter/472457.rdf
Name: NC_VD_H_D7_1000_af
Units: text
Description: <p>Allele frequency values for Sample Id: Location (State and Site); Day Sample (D1 or D7); CO2 Level (385 or 1000 in ppm)<br>See Metadata Dataset Description for key to State and Site</p>
http://lod.bco-dmo.org/id/dataset-parameter/472458.rdf
Name: CC_SH_H_D1_0385_af
Units: text
Description: <p>Allele frequency values for Sample Id: Location (State and Site); Day Sample (D1 or D7); CO2 Level (385 or 1000 in ppm)<br>See Metadata Dataset Description for key to State and Site</p>
http://lod.bco-dmo.org/id/dataset-parameter/472459.rdf
Name: CC_SH_H_D7_0385_af
Units: text
Description: <p>Allele frequency values for Sample Id: Location (State and Site); Day Sample (D1 or D7); CO2 Level (385 or 1000 in ppm)<br>See Metadata Dataset Description for key to State and Site</p>
http://lod.bco-dmo.org/id/dataset-parameter/472460.rdf
Name: CC_SH_H_D1_1000_af
Units: text
Description: <p>Allele frequency values for Sample Id: Location (State and Site); Day Sample (D1 or D7); CO2 Level (385 or 1000 in ppm)<br>See Metadata Dataset Description for key to State and Site</p>
http://lod.bco-dmo.org/id/dataset-parameter/472461.rdf
Name: CC_SH_H_D7_1000_af
Units: text
Description: <p>Allele frequency values for Sample Id: Location (State and Site); Day Sample (D1 or D7); CO2 Level (385 or 1000 in ppm)<br>See Metadata Dataset Description for key to State and Site</p>
http://lod.bco-dmo.org/id/dataset-parameter/472462.rdf
Name: CC_TP_L_D1_0385_af
Units: text
Description: <p>Allele frequency values for Sample Id: Location (State and Site); Day Sample (D1 or D7); CO2 Level (385 or 1000 in ppm)<br>See Metadata Dataset Description for key to State and Site</p>
http://lod.bco-dmo.org/id/dataset-parameter/472463.rdf
Name: CC_TP_L_D7_0385_af
Units: text
Description: <p>Allele frequency values for Sample Id: Location (State and Site); Day Sample (D1 or D7); CO2 Level (385 or 1000 in ppm)<br>See Metadata Dataset Description for key to State and Site</p>
http://lod.bco-dmo.org/id/dataset-parameter/472464.rdf
Name: CC_TP_L_D1_1000_af
Units: text
Description: <p>Allele frequency values for Sample Id: Location (State and Site); Day Sample (D1 or D7); CO2 Level (385 or 1000 in ppm)<br>See Metadata Dataset Description for key to State and Site</p>
http://lod.bco-dmo.org/id/dataset-parameter/472465.rdf
Name: CC_TP_L_D7_1000_af
Units: text
Description: <p>Allele frequency values for Sample Id: Location (State and Site); Day Sample (D1 or D7); CO2 Level (385 or 1000 in ppm)<br>See Metadata Dataset Description for key to State and Site</p>
http://lod.bco-dmo.org/id/dataset-parameter/472466.rdf
Name: SB_AL_L_D1_0385_af
Units: text
Description: <p>Allele frequency values for Sample Id: Location (State and Site); Day Sample (D1 or D7); CO2 Level (385 or 1000 in ppm)<br>See Metadata Dataset Description for key to State and Site</p>
http://lod.bco-dmo.org/id/dataset-parameter/472467.rdf
Name: SB_AL_L_D7_0385_af
Units: text
Description: <p>Allele frequency values for Sample Id: Location (State and Site); Day Sample (D1 or D7); CO2 Level (385 or 1000 in ppm)<br>See Metadata Dataset Description for key to State and Site</p>
http://lod.bco-dmo.org/id/dataset-parameter/472468.rdf
Name: SB_AL_L_D1_1000_af
Units: text
Description: <p>Allele frequency values for Sample Id: Location (State and Site); Day Sample (D1 or D7); CO2 Level (385 or 1000 in ppm)<br>See Metadata Dataset Description for key to State and Site</p>
http://lod.bco-dmo.org/id/dataset-parameter/472469.rdf
Name: SB_AL_L_D7_1000_af
Units: text
Description: <p>Allele frequency values for Sample Id: Location (State and Site); Day Sample (D1 or D7); CO2 Level (385 or 1000 in ppm)<br>See Metadata Dataset Description for key to State and Site</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
7513292
https://datadocs.bco-dmo.org/file/zqqA8LOtxgxLE6/Larval_SNPs.csv
Larval_SNPs.csv
Primary data file for dataset ID 472160
download
https://osprey.bco-dmo.org/dataset/472160/data/download
download
onLine
dataset
<p>See resulting publications and <a href="http://sfg.stanford.edu/">http://sfg.stanford.edu/</a></p>
Specified by the Principal Investigator(s)
<p>filtered by: minimum 10 reads, &lt;.1 diff day 1- 7, &gt;5% minor allele</p>
<p>See: resulting publications and <a href="http://sfg.stanford.edu/">http://sfg.stanford.edu/</a></p>
<p><strong>BCO-DMO Processing Notes</strong><br />
Original file: "larval SNPs for NSF-palumbi.xlsx"&nbsp; contributed by Kristen Milligan<br />
- Approx Lat/Lon of Hopkins Marine Station/Palumbi Lab appended to enable data discovery in MapServer<br />
- Parameter names edited to conform to BCO-DMO parameter naming conventions</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Deployment: Lab_Stanford_HMS_Palumbi
Lab_Stanford_HMS_Palumbi
STANFORD HMS Palumbi
STANFORD HMS Palumbi
laboratory
Lab_Stanford_HMS_Palumbi
Stephen R. Palumbi
Stanford University - Hopkins
STANFORD HMS Palumbi
STANFORD HMS Palumbi
laboratory