http://lod.bco-dmo.org/id/dataset/473296
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2013-12-20
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Inorganic and organic nutrient data from Niskin bottles from R/V Knorr cruise KN210-04 in the Western Atlantic Ocean between Uruguay and Barbados in 2013 (Deep Atlantic DOM project)
2016-07-25
publication
2016-07-25
revision
Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)
2019-11-21
publication
https://doi.org/10.1575/1912/bco-dmo.473296.1
Elizabeth Kujawinski
Woods Hole Oceanographic Institution
principalInvestigator
Krista Longnecker
Woods Hole Oceanographic Institution
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Kujawinski, E., Longnecker, K. (2016) Inorganic and organic nutrient data from Niskin bottles from R/V Knorr cruise KN210-04 in the Western Atlantic Ocean between Uruguay and Barbados in 2013 (Deep Atlantic DOM project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2016-07-25 [if applicable, indicate subset used]. doi:10.1575/1912/bco-dmo.473296.1 [access date]
Inorganic and organic nutrient data from Niskin bottles. Dataset Description: <p>Inorganic and organic nutrient data from Niskin bottles from the KN210-04 cruise. Data include concentration of: phosphate, nitrate+nitrite, silicate, nitrite, ammonium, non-purgeable organic carbon, and total nitrogen.</p> Methods and Sampling: <p>Samples for inorganic nutrient analysis were collected in HDPE bottles and frozen (-20ºC) immediately after sample collection. Samples were kept frozen until processing by Joe Jennings at Oregon State University. The analyses for phosphate (PO4), nitrate plus nitrite (NO3_NO2), nitrite (NO2), ammonium (NH4), and silicic acid (silicate) were performed using a hybrid Technicon AutoAnalyzerII and Alpkem RFA300 system following protocols modified from Gordon et al. (see below for reference). The estimated precision for each element was as follows: PO4, ± 0.008 µM; NO3_NO2, ± 0.15 µM; NO2, ± 0.01 µM; silicic acid, ± 0.3 µM.</p>
<p>To obtain the concentration of total organic carbon (TOC) and total nitrogen (TN), a 40 ml aliquot of whole seawater was acidified to pH~3 with concentrated hydrochloric acid (HCl) and stored in combusted glass vials at 4°C until analysis with a Shimadzu TOC-VCSH total organic carbon analyzer coupled to a TNM-1 analyzer. Blanks (MilliQ water) and standard curves with potassium hydrogen phthalate and potassium nitrate were interspersed into the sample runs. The coefficient of variability between replicate injections was &lt;1%. Comparisons to standards provided by Prof. D. Hansell (University of Miami) were made daily.</p>
<p><em>References:</em><br />
Gordon, L. I., J. C. Jennings, Jr., A. A. Ross, and J. M. Krest. 1994. A suggested protocol for continuous flow automated analysis of seawater nutrients (phosphate, nitrate, nitrite and silicic acid) in the WOCE Hydrographic Program and the Joint Global Ocean Fluxes Study. In WOCE operations manual. WOCE report no. 68/91, revision 1. WHP Office Report WHPO91-1. Woods Hole Oceanographic Institution, Woods Hole, Mass.</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1154320 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1154320
completed
Elizabeth Kujawinski
Woods Hole Oceanographic Institution
508-289-3493
266 Woods Hole Rd. MS #4
Woods Hole
MA
02543
USA
ekujawinski@whoi.edu
pointOfContact
Krista Longnecker
Woods Hole Oceanographic Institution
508-289-2824
266 Woods Hole Road MS# 04
Woods Hole
MA
02543
USA
klongnecker@whoi.edu
pointOfContact
asNeeded
Dataset Version: 1
Unknown
cast
station
date_start_utc
time_start_utc
event_start
lat_start
lon_start
niskin
depth
press
bots
PO4
NO3_NO2
silicate
NO2
NH4
NPOC
TN
Alpkem RFA300
Niskin bottle
Shimadzu TOC-V
Technicon AutoAnalyzerII
theme
None, User defined
cast
station
date_utc
time_utc
event
latitude at start time of measurement
longitude at start time of measurement
Niskin bottle number
depth
water pressure
bottles
reactive phosphorus (PO4)
nitrate plus nitrite
Silicate (reactive silica)
Nitrite
Ammonium
No BCO-DMO term
featureType
BCO-DMO Standard Parameters
Alpkem RFA300
Niskin bottle
Shimadzu TOC-V Analyzer
Technicon AutoAnalyzer II
instrument
BCO-DMO Standard Instruments
KN210-04
service
Deployment Activity
Western Atlantic Ocean between Uruguay and Barbados
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Ocean Carbon and Biogeochemistry
http://us-ocb.org/
Ocean Carbon and Biogeochemistry
The Ocean Carbon and Biogeochemistry (OCB) program focuses on the ocean's role as a component of the global Earth system, bringing together research in geochemistry, ocean physics, and ecology that inform on and advance our understanding of ocean biogeochemistry. The overall program goals are to promote, plan, and coordinate collaborative, multidisciplinary research opportunities within the U.S. research community and with international partners. Important OCB-related activities currently include: the Ocean Carbon and Climate Change (OCCC) and the North American Carbon Program (NACP); U.S. contributions to IMBER, SOLAS, CARBOOCEAN; and numerous U.S. single-investigator and medium-size research projects funded by U.S. federal agencies including NASA, NOAA, and NSF.
The scientific mission of OCB is to study the evolving role of the ocean in the global carbon cycle, in the face of environmental variability and change through studies of marine biogeochemical cycles and associated ecosystems.
The overarching OCB science themes include improved understanding and prediction of: 1) oceanic uptake and release of atmospheric CO2 and other greenhouse gases and 2) environmental sensitivities of biogeochemical cycles, marine ecosystems, and interactions between the two.
The OCB Research Priorities (updated January 2012) include: ocean acidification; terrestrial/coastal carbon fluxes and exchanges; climate sensitivities of and change in ecosystem structure and associated impacts on biogeochemical cycles; mesopelagic ecological and biogeochemical interactions; benthic-pelagic feedbacks on biogeochemical cycles; ocean carbon uptake and storage; and expanding low-oxygen conditions in the coastal and open oceans.
OCB
largerWorkCitation
program
Center for Chemical Currencies of a Microbial Planet
https://ccomp-stc.org/
Center for Chemical Currencies of a Microbial Planet
Functions carried out by microscopic inhabitants of the surface ocean affect every aspect of life on our planet, regardless of distance from the coast. Ocean phytoplankton are responsible for half of the photosynthesis on Earth, the first step in a complex system that annually withdraws 50 billion metric tons of carbon from the atmosphere to sustain their growth. Of this, 25 billion metric tons participate in a rapid cycle in which biologically reactive material is released into seawater and converted back into carbon dioxide by marine bacteria within hours to days. The chemical-microbe network at the heart of this fast cycle remains poorly constrained; consequently, its primary currencies and controls remain elusive; its sensitivities to changing ocean conditions are unknown; and its responses to future climate scenarios are not predictable. The Center for Chemical Currencies of a Microbial Planet (C-CoMP) integrates research, education and knowledge transfer activities to develop a mechanistic understanding of surface ocean carbon flux within the context of a changing ocean and through increased participation in ocean sciences. C-CoMP supports science teams that merge biology, chemistry, modeling, and informatics to close long-standing knowledge gaps in the identities and dynamics of organic molecules that serve as the currencies of elemental transfer between the ocean and atmosphere. C-CoMP fosters education, outreach, and knowledge transfer activities that engage students of all ages, broaden participation in the next generation of ocean scientists, and extend novel open-science approaches into complementary academic and industrial communities. The Center framework is critical to this mission, uniquely facilitating an open exchange of experimental and computational science, methodological and conceptual challenges, and collaborations that establish integrated science and education partnerships. With expanded participation in ocean science research and ocean literacy across the US society, the next generation of ocean scientists will better reflect the diverse US population.
Climate-carbon feedbacks on the marine carbon reservoir are major uncertainties for future climate projections, and the trajectory and rate of ocean changes depend directly on microbial responses to temperature increases, ocean acidification, and other perturbations driven by climate change. C-CoMP research closes an urgent knowledge gap in the mechanisms driving carbon flow between ocean and atmosphere, with global implications for predictive climate models. The Center supports interdisciplinary science teams following open and reproducible science practices to address: (1) the chemical currencies of surface ocean carbon flux; (2) the structure and regulation of the chemical-microbe network that mediates this flux; and (3) sensitivity of the network and its feedbacks on climate. C-CoMP leverages emerging tools and technologies to tackle critical challenges in these themes, in synergy with existing ocean programs and consistent with NSF’s Big Ideas. C-CoMP education and outreach activities seek to overcome barriers to ocean literacy and diversify participation in ocean research. The Center is developing (1) initiatives to expand ocean literacy in K-12 and the broader public, (2) ocean sciences undergraduate curricula and research opportunities that provide multiple entry points into research experiences, (3) post-baccalaureate programs to transition undergraduates into graduate education and careers in ocean science, and (4) interdisciplinary graduate student and postdoctoral programs that prepare the next generation of ocean scientists. The C-CoMP team includes education faculty who evaluate the impacts of education and outreach activities and export successful STEM initiatives to the education community. C-CoMP is revolutionizing the technologies for studying chemical transformations in microbial systems to build understanding of the outsized impact of microbes on elemental cycles. Open science, cross-disciplinary collaborations, community engagement, and inclusive practices foster strategic advances in critical science problems and STEM initiatives. C-CoMP science, education, and knowledge-transfer themes are efficiently addressed through a sustained network of scientists addressing critical research challenges while broadening the workforce that will tackle multi-disciplinary problems with academic, industrial and policy partners.
This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.
The Program's Data Management Plan (DMP) is available as a PDF document.
C-CoMP
largerWorkCitation
program
Dissolved Organic Matter Composition in the Deep Atlantic Ocean
https://osprey.bco-dmo.org/project/2204
Dissolved Organic Matter Composition in the Deep Atlantic Ocean
<p>Transformations of dissolved organic matter (DOM) in the deep ocean have profound impacts on the global carbon cycle due to the sequestration of carbon dioxide (CO2) away from the atmosphere. Although research has been conducted on the high molecular weight component of this material, the same cannot be said for low molecular weight DOM because the needed analytical techniques have not been available to determine its composition and reactivity.</p>
<p>In recent years, a research team at Woods Hole Oceanographic Institution has acquired the necessary analytical capability. As such, in this project, they will carry out the first systematic survey of deep ocean DOM in the western Atlantic Ocean to characterize the low molecular weight fraction of DOM in southward flowing North Atlantic Deep Water (NADW), northward flowing Antarctic Bottom Water (AABW), and Antarctic Intermediate Water (AAIW). Using ultrahigh resolution mass spectrometry and multi-stage fragmentation coupled to liquid chromatography, the scientists will determine the spatial variability in the composition of DOM along the flow path of the water masses, as well as assess the source water, transport, and surface processes that contribute to temporal changes in DOM composition. These results will be augmented with structural elucidation and quantitative assays of unique marker compounds for each water mass. Results will provide important insights into the biogeochemical reactions that govern DOM dynamics in the deep ocean.</p>
Deep Atlantic DOM
largerWorkCitation
project
eng; USA
oceans
Western Atlantic Ocean between Uruguay and Barbados
-55.299424
-24.000749
-38.0026
9.700333
2013-03-27
2013-05-06
Western Atlantic Ocean
0
BCO-DMO catalogue of parameters from Inorganic and organic nutrient data from Niskin bottles from R/V Knorr cruise KN210-04 in the Western Atlantic Ocean between Uruguay and Barbados in 2013 (Deep Atlantic DOM project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/473316.rdf
Name: cast
Units: dimensionless
Description: <p>Consecutive cast number for the instrument.</p>
http://lod.bco-dmo.org/id/dataset-parameter/473317.rdf
Name: station
Units: dimensionless
Description: <p>Identification number of the sampling station.</p>
http://lod.bco-dmo.org/id/dataset-parameter/473318.rdf
Name: date_start_utc
Units: unitless
Description: <p>Date (UTC) given as 4-digit year -- 2-digit month -- 2-digit day in YYYYmmdd format.</p>
http://lod.bco-dmo.org/id/dataset-parameter/473319.rdf
Name: time_start_utc
Units: HHMM
Description: <p>Time (UTC) given as hour -- minute.</p>
http://lod.bco-dmo.org/id/dataset-parameter/473320.rdf
Name: event_start
Units: dimensionless
Description: <p>The event number from the ELOG maintained during the cruise.</p>
http://lod.bco-dmo.org/id/dataset-parameter/473321.rdf
Name: lat_start
Units: decimal degrees
Description: <p>Latitude at the time the event started (from the cruise event log).</p>
http://lod.bco-dmo.org/id/dataset-parameter/473322.rdf
Name: lon_start
Units: decimal degrees
Description: <p>Longitude at the time the event started (from the cruise event log).</p>
http://lod.bco-dmo.org/id/dataset-parameter/473323.rdf
Name: niskin
Units: dimensionless
Description: <p>Niskin bottle number.</p>
http://lod.bco-dmo.org/id/dataset-parameter/473324.rdf
Name: depth
Units: meters (m)
Description: <p>Depth.</p>
http://lod.bco-dmo.org/id/dataset-parameter/473325.rdf
Name: press
Units: decibars (db)
Description: <p>Pressure.</p>
http://lod.bco-dmo.org/id/dataset-parameter/473326.rdf
Name: bots
Units: dimensionless
Description: <p>The full range of Niskin bottles used for the sample collection. For this particular dataset this is equal to the Niskin number.</p>
http://lod.bco-dmo.org/id/dataset-parameter/473327.rdf
Name: PO4
Units: micromoles per liter (umol/L)
Description: <p>Phosphate.</p>
http://lod.bco-dmo.org/id/dataset-parameter/473328.rdf
Name: NO3_NO2
Units: micromoles per liter (umol/L)
Description: <p>Nitrate + nitrite.</p>
http://lod.bco-dmo.org/id/dataset-parameter/473329.rdf
Name: silicate
Units: micromoles per liter (umol/L)
Description: <p>Silicate.</p>
http://lod.bco-dmo.org/id/dataset-parameter/473330.rdf
Name: NO2
Units: micromoles per liter (umol/L)
Description: <p>Nitrite.</p>
http://lod.bco-dmo.org/id/dataset-parameter/473331.rdf
Name: NH4
Units: micromoles per liter (umol/L)
Description: <p>Ammonium.</p>
http://lod.bco-dmo.org/id/dataset-parameter/473332.rdf
Name: NPOC
Units: micromolar (uM)
Description: <p>Non-purgeable organic carbon.</p>
http://lod.bco-dmo.org/id/dataset-parameter/473333.rdf
Name: TN
Units: micromolar (uM)
Description: <p>Total nitrogen.</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
29630
https://darchive.mblwhoilibrary.org/bitstream/1912/24868/1/dataset-473296_nutrients__v1.tsv
download
https://doi.org/10.1575/1912/bco-dmo.473296.1
download
onLine
dataset
<p>Samples for inorganic nutrient analysis were collected in HDPE bottles and frozen (-20ºC) immediately after sample collection. Samples were kept frozen until processing by Joe Jennings at Oregon State University. The analyses for phosphate (PO4), nitrate plus nitrite (NO3_NO2), nitrite (NO2), ammonium (NH4), and silicic acid (silicate) were performed using a hybrid Technicon AutoAnalyzerII and Alpkem RFA300 system following protocols modified from Gordon et al. (see below for reference). The estimated precision for each element was as follows: PO4, ± 0.008 µM; NO3_NO2, ± 0.15 µM; NO2, ± 0.01 µM; silicic acid, ± 0.3 µM.</p>
<p>To obtain the concentration of total organic carbon (TOC) and total nitrogen (TN), a 40 ml aliquot of whole seawater was acidified to pH~3 with concentrated hydrochloric acid (HCl) and stored in combusted glass vials at 4°C until analysis with a Shimadzu TOC-VCSH total organic carbon analyzer coupled to a TNM-1 analyzer. Blanks (MilliQ water) and standard curves with potassium hydrogen phthalate and potassium nitrate were interspersed into the sample runs. The coefficient of variability between replicate injections was &lt;1%. Comparisons to standards provided by Prof. D. Hansell (University of Miami) were made daily.</p>
<p><em>References:</em><br />
Gordon, L. I., J. C. Jennings, Jr., A. A. Ross, and J. M. Krest. 1994. A suggested protocol for continuous flow automated analysis of seawater nutrients (phosphate, nitrate, nitrite and silicic acid) in the WOCE Hydrographic Program and the Joint Global Ocean Fluxes Study. In WOCE operations manual. WOCE report no. 68/91, revision 1. WHP Office Report WHPO91-1. Woods Hole Oceanographic Institution, Woods Hole, Mass.</p>
Specified by the Principal Investigator(s)
<p>The data have been examined to identify outliers, and no samples were removed from the dataset. There are values in the inorganic nutrient data which are below zero, and these should be considered as below the detection limit for the instrument.</p>
<p>BCO-DMO Processing Notes:<br />
- Parameter names were modified to conform with BCO-DMO naming conventions.<br />
- lat_start and lon_start were added by joining the data to the event log and matching on the unique event number.<br />
- Replaced 'NaN' with 'nd' to indicate 'no data'.<br />
- Replaced questionable NPOC value for cast 18, niskin 21 with 'nd' per request of PI (change made on 25 July 2016).</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Alpkem RFA300
Alpkem RFA300
PI Supplied Instrument Name: Alpkem RFA300 PI Supplied Instrument Description:The analyses for phosphate (PO4), nitrate plus nitrite (NO3_NO2), nitrite (NO2), ammonium (NH4), and silicic acid (silicate) were performed using a hybrid Technicon AutoAnalyzerII and Alpkem RFA300. Instrument Name: Alpkem RFA300 Instrument Short Name:Alpkem RFA300 Instrument Description: A rapid flow analyser (RFA) that may be used to measure nutrient concentrations in seawater. It is an air-segmented, continuous flow instrument comprising a sampler, a peristaltic pump which simultaneously pumps samples, reagents and air bubbles through the system, analytical cartridge, heating bath, colorimeter, data station, and printer. The RFA-300 was a precursor to the smaller Alpkem RFA/2 (also RFA II or RFA-2). Community Standard Description: http://vocab.nerc.ac.uk/collection/L22/current/TOOL0414/
Niskin bottle
Niskin bottle
PI Supplied Instrument Name: Niskin bottle Instrument Name: Niskin bottle Instrument Short Name:Niskin bottle Instrument Description: A Niskin bottle (a next generation water sampler based on the Nansen bottle) is a cylindrical, non-metallic water collection device with stoppers at both ends. The bottles can be attached individually on a hydrowire or deployed in 12, 24, or 36 bottle Rosette systems mounted on a frame and combined with a CTD. Niskin bottles are used to collect discrete water samples for a range of measurements including pigments, nutrients, plankton, etc. Community Standard Description: http://vocab.nerc.ac.uk/collection/L22/current/TOOL0412/
Shimadzu TOC-V
Shimadzu TOC-V
PI Supplied Instrument Name: Shimadzu TOC-V PI Supplied Instrument Description:The concentrations of total organic carbon (TOC) and total nitrogen (TN) were determined with a Shimadzu TOC-VCSH total organic carbon analyzer coupled to a TNM-1 analyzer. Instrument Name: Shimadzu TOC-V Analyzer Instrument Short Name:Shimadzu TOC-V Instrument Description: A Shimadzu TOC-V Analyzer measures DOC by high temperature combustion method. Community Standard Description: http://onto.nerc.ac.uk/CAST/124
Technicon AutoAnalyzerII
Technicon AutoAnalyzerII
PI Supplied Instrument Name: Technicon AutoAnalyzerII PI Supplied Instrument Description:The analyses for phosphate (PO4), nitrate plus nitrite (NO3_NO2), nitrite (NO2), ammonium (NH4), and silicic acid (silicate) were performed using a hybrid Technicon AutoAnalyzerII and Alpkem RFA300. Instrument Name: Technicon AutoAnalyzer II Instrument Short Name: Instrument Description: A rapid flow analyzer that may be used to measure nutrient concentrations in seawater. It is a continuous segmented flow instrument consisting of a sampler, peristaltic pump, analytical cartridge, heating bath, and colorimeter. See more information about this instrument from the manufacturer. Community Standard Description: http://vocab.nerc.ac.uk/collection/L22/current/TOOL0291/
Cruise: KN210-04
KN210-04
R/V Knorr
Community Standard Description
International Council for the Exploration of the Sea
R/V Knorr
vessel
KN210-04
Elizabeth Kujawinski
Woods Hole Oceanographic Institution
R/V Knorr
Community Standard Description
International Council for the Exploration of the Sea
R/V Knorr
vessel