http://lod.bco-dmo.org/id/dataset/474322
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2014-01-13
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Concentrations of anions, cations, and trace elements/metals from vents near Milos Island, Greece. from May 2012 (Hydrothermal Autotrophic Carbon Fixation project)
2014-01-08
publication
2014-01-08
revision
BCO-DMO Linked Data URI
2014-01-08
creation
http://lod.bco-dmo.org/id/dataset/474322
Dionysis Foustoukos
Carnegie Institution for Science
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Foustoukos, D. (2014) Concentrations of anions, cations, and trace elements/metals from vents near Milos Island, Greece. from May 2012 (Hydrothermal Autotrophic Carbon Fixation project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 2014-01-08) Version Date 2014-01-08 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/474322 [access date]
Concentrations of anions, cations, and trace elements/metals from vents near Milos I., Greece. Dataset Description: <p>Data from samples collected at the shallow-water hydrothermal vent sites at Paleochori Bay, Milos Island, Greece, and&nbsp;includes the chemical composition (anion, cation, trace elements/metals) of vent fluids sampled.</p>
<p><br />
This is also available at <a href="http://people.gl.ciw.edu/dfoustoukos/Site/Data_Repository.html" target="_blank"> http://people.gl.ciw.edu/dfoustoukos/Site/Data_Repository.html</a></p> Methods and Sampling: <p>Fluid samples were collected from the water column close to the shallow-water venting sites and from the interstitial waters of all cores at 2 cm intervals. Fluids and gases were also sampled from the subaerial sites. Samples returned to the Geophysical Lab were analyzed to determine dissolved concentrations of: organic acids and a range of major anions/cations species (e.g. SO42-, PO42-, SNH3, NO3-, Cl-, Na+, K+, Ca2+, and Mg2+) including trace elements and metals. We used ion chromatography (Metrohm "MIC-3 Advanced IC, Metrosep A supp 7-250/16-250; C4- 250 columns). Fluids were analyzed for metal and trace element concentrations at the MC-ICP-MS facility of Prof. Michael Bizimis at the University of South Carolina.&nbsp;<br />
&nbsp;</p>
<p><strong>Relevant References:</strong></p>
<p>Mustafa Yücel, Stefan M. Sievert, Costantino Vetriani, Dionysis I. Foustoukos, Donato Giovannelli, Nadine Le Bris. Eco-geochemical dynamics of a shallow-water hydrothermal vent system at Milos Island, Aegean Sea (Eastern Mediterranean). Chemical Geology 356 (2013) 11-20.</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1123871 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1123871
completed
Dionysis Foustoukos
Carnegie Institution for Science
1-202-478-8968
Geophysical Laboratory 5251 Broad Branch Rd. NW
Washington
DC
20015
USA
dfoustoukos@cis.edu
pointOfContact
asNeeded
Dataset Version: 2014-01-08
Unknown
date
year
month
day
yrday
site
lat
lon
distance
depth_cm
sample_descrip
sample_id
temp
activity
Li
Na
NH4
K
Mg_IC
Mg_USC
Ca_IC
Ca_USC
Cl
Br
F
NO3
PO4
SO4
Sr
Cs
Rb
Ba
Mn
Fe
Ni
Cu
Si
temperature probe
theme
None, User defined
date
year
month of year
day of month
year day (Day of Year, or day of year and decimal time)
site
latitude
longitude
No BCO-DMO term
depth
sample description
sample identification
water temperature at measurement depth
Ammonium
Nitrate
reactive phosphorus (PO4)
sulfate
trace metal concentration
Barium
Iron
featureType
BCO-DMO Standard Parameters
Water Temperature Sensor
instrument
BCO-DMO Standard Instruments
Milos_vents_2012
service
Deployment Activity
Milos Island, Greece
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Center for Dark Energy Biosphere Investigations
http://www.darkenergybiosphere.org
Center for Dark Energy Biosphere Investigations
The mission of the Center for Dark Energy Biosphere Investigations (C-DEBI) is to explore life beneath the seafloor and make transformative discoveries that advance science, benefit society, and inspire people of all ages and origins.
C-DEBI provides a framework for a large, multi-disciplinary group of scientists to pursue fundamental questions about life deep in the sub-surface environment of Earth. The fundamental science questions of C-DEBI involve exploration and discovery, uncovering the processes that constrain the sub-surface biosphere below the oceans, and implications to the Earth system. What type of life exists in this deep biosphere, how much, and how is it distributed and dispersed? What are the physical-chemical conditions that promote or limit life? What are the important oxidation-reduction processes and are they unique or important to humankind? How does this biosphere influence global energy and material cycles, particularly the carbon cycle? Finally, can we discern how such life evolved in geological settings beneath the ocean floor, and how this might relate to ideas about the origin of life on our planet?
C-DEBI's scientific goals are pursued with a combination of approaches:
(1) coordinate, integrate, support, and extend the research associated with four major programs—Juan de Fuca Ridge flank (JdF), South Pacific Gyre (SPG), North Pond (NP), and Dorado Outcrop (DO)—and other field sites;
(2) make substantial investments of resources to support field, laboratory, analytical, and modeling studies of the deep subseafloor ecosystems;
(3) facilitate and encourage synthesis and thematic understanding of submarine microbiological processes, through funding of scientific and technical activities, coordination and hosting of meetings and workshops, and support of (mostly junior) researchers and graduate students; and
(4) entrain, educate, inspire, and mentor an interdisciplinary community of researchers and educators, with an emphasis on undergraduate and graduate students and early-career scientists.
Note: Katrina Edwards was a former PI of C-DEBI; James Cowen is a former co-PI.
Data Management:
C-DEBI is committed to ensuring all the data generated are publically available and deposited in a data repository for long-term storage as stated in their Data Management Plan (PDF) and in compliance with the NSF Ocean Sciences Sample and Data Policy. The data types and products resulting from C-DEBI-supported research include a wide variety of geophysical, geological, geochemical, and biological information, in addition to education and outreach materials, technical documents, and samples. All data and information generated by C-DEBI-supported research projects are required to be made publically available either following publication of research results or within two (2) years of data generation.
To ensure preservation and dissemination of the diverse data-types generated, C-DEBI researchers are working with BCO-DMO Data Managers make data publicly available online. The partnership with BCO-DMO helps ensure that the C-DEBI data are discoverable and available for reuse. Some C-DEBI data is better served by specialized repositories (NCBI's GenBank for sequence data, for example) and, in those cases, BCO-DMO provides dataset documentation (metadata) that includes links to those external repositories.
C-DEBI
largerWorkCitation
program
Autotrophic carbon fixation at a shallow-water hydrothermal system: Constraining microbial activity, isotopic and geochemical regimes
https://osprey.bco-dmo.org/project/473892
Autotrophic carbon fixation at a shallow-water hydrothermal system: Constraining microbial activity, isotopic and geochemical regimes
<p>In this project we studied the shallow-water hydrothermal vent sites at Milos Island (Greece) to better understand the extent of autotrophic carbon fixation and its chemical and isotopic signature along environmental (redox/thermal) gradients. This was a 12-day long expedition (May 18 to 30, 2012) to sample vent fluids, gases and retrieve sediment cores at Paleochori Bay by using SCUBA diving at 8-10 m depth. In addition to the submarine vent sites, two subaerial locations of venting were identified at 36o 40' 28"N - 24o 31' 14" E and 36o 40' 25" N - 24o 30' 44" E. Both the subaerial and submarine sites are located on the same fracture zone that likely controls the hydrothermal circulation of evolved meteoritic water and seawater within the magmatic zone of Milos Island. To this end, the geochemistry of the fluids and gases emitted from subaerial sites provide important information towards identifying the linkage between the subaerial and submarine magmatic activity and provide insights on the metabolic functions (e.g. H2 oxidation, Fe(III) reduction, C and S cycling) of the subsurface microbial community. </p>
<p>Abstract:<br />
Currently, there is only limited information on the identity and activity of the microorganisms carrying out CO2-fixation in situ, despite the fact that these organisms form the basis of their respective ecosystems. Representatives that are able to grow autotrophically are known to exist in almost all major groups of prokaryotes, and these organisms play essential roles in ecosystems by providing a continuous supply of organic carbon for heterotrophs. Microorganisms present in extreme environments utilize CO2- fixation pathways other than the Calvin-Benson-Bassham (CBB) cycle. At present, five alternative autotrophic CO2 fixation pathways are known. Different carbon fixation pathways result in distinct isotopic signatures of the produced biomass due to the isotopic discrimination between light (12C) and heavy (13C) carbon by the carboxylating enzymes. Thus, inferences about the carbon fixation pathway predominantly utilized by the microbial community can also be made based on the stable carbon isotopic composition of the organic matter, in extant systems as well as in the geological record. However, at present little is known about the systematics and extents of fractionation during carbon fixation by prokaryotic organisms, and to our knowledge no studies exist that have systematically studied the relationship between the operation of different carbon fixation pathways and how this is reflected in the stable carbon isotopic composition in a natural system. This is a 2-year interdisciplinary, international research program that employs a powerful combination of cutting-edge research tools aiming to improve our understanding of autotrophic carbon fixation and its chemical and isotopic signature along environmental gradients in a natural hydrothermal system. The following hypotheses are addressed:</p>
<p>1. The diversity of microorganisms present along a thermal and redox gradient, and rates of CO2 fixation, will reflect adaptation to in situ temperatures and geochemical conditions</p>
<p>2. Microorganisms utilizing the CBB cycle for autotrophic CO2-fixation will represent a smaller percentage of the chemolithoautotrophic community at higher temperatures, where microorganisms utilizing alternative CO2-fixation pathways dominate</p>
<p>3. Isotopic values of biomass and specific biomarker molecules will vary along a thermal and redox gradient from zones characterized by a higher hydrothermal fluid flux and thus higher temperatures to the surrounding, cooler areas, corresponding to the physiology of the microorganisms utilizing different pathways for carbon fixation</p>
<p>The PIs will use a multidisciplinary approach to delineate the relative contribution of the different carbon fixation pathways along an environmental gradient by combining metagenomic analyses coupled with: 1) an assessment of the frequency and the expression of specific key genes involved in carbon fixation, and 2) with the measurement of carbon fixation rates. These data will be integrated with the determination of stable C isotopic composition of biomass, DIC, and specific hydrocarbons/lipids. Due to its easy accessibility, well-established environmental gradients, and extensive background information, the shallow-water vents off Milos (Greece) will be used as a natural laboratory to perform these studies.</p>
<p>Intellectual Merit. The data generated in this study will allow constraints on the relationship between autotrophic carbon fixation and the resulting isotopic signatures of biomass and specific biomarker molecules (e.g. CH4, C2+ alkanes, lipids) in a natural system. This has implications for assessing the importance of carbon fixation in extant ecosystems, and it will also provide a tool to improve the interpretation of isotopic values in the geological record.</p>
Hydrothermal Autotrophic Carbon Fixation
largerWorkCitation
project
eng; USA
oceans
Milos Island, Greece
2014-01-08
Shallow-water hydrothermal vents, Paleochori Bay, Milos Island, Greece
0
BCO-DMO catalogue of parameters from Concentrations of anions, cations, and trace elements/metals from vents near Milos Island, Greece. from May 2012 (Hydrothermal Autotrophic Carbon Fixation project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/474327.rdf
Name: date
Units: mm/dd/yyyy
Description: <p>sampling date</p>
http://lod.bco-dmo.org/id/dataset-parameter/474328.rdf
Name: year
Units: yyyy
Description: <p>year of sampling</p>
http://lod.bco-dmo.org/id/dataset-parameter/474329.rdf
Name: month
Units: 1 to 12
Description: <p>month of sampling</p>
http://lod.bco-dmo.org/id/dataset-parameter/474330.rdf
Name: day
Units: 1 to 31
Description: <p>day of sampling</p>
http://lod.bco-dmo.org/id/dataset-parameter/474331.rdf
Name: yrday
Units: 1 to 365
Description: <p>yearday of sampling; e.g. 1.5 means January 1 at 1200 hours (noon time)</p>
http://lod.bco-dmo.org/id/dataset-parameter/474332.rdf
Name: site
Units: unitless
Description: <p>sample location identification</p>
http://lod.bco-dmo.org/id/dataset-parameter/474333.rdf
Name: lat
Units: decimal degrees
Description: <p>latitude; north is postive</p>
http://lod.bco-dmo.org/id/dataset-parameter/474334.rdf
Name: lon
Units: decimal degrees
Description: <p>longitude; east is postive</p>
http://lod.bco-dmo.org/id/dataset-parameter/474335.rdf
Name: distance
Units: centimeters
Description: <p>distance from the vent site</p>
http://lod.bco-dmo.org/id/dataset-parameter/474336.rdf
Name: depth_cm
Units: centimeters
Description: <p>sampling depth</p>
http://lod.bco-dmo.org/id/dataset-parameter/474337.rdf
Name: sample_descrip
Units: text
Description: <p>brief description of the sample name</p>
http://lod.bco-dmo.org/id/dataset-parameter/474338.rdf
Name: sample_id
Units: alphanumeric
Description: <p>sample code</p>
http://lod.bco-dmo.org/id/dataset-parameter/474339.rdf
Name: temp
Units: degrees Celsius
Description: <p>temperature at sampling location</p>
http://lod.bco-dmo.org/id/dataset-parameter/474340.rdf
Name: activity
Units: text
Description: <p>vent or subaerial</p>
http://lod.bco-dmo.org/id/dataset-parameter/474341.rdf
Name: Li
Units: millimoles
Description: <p>Lithium ion concentration as measured by the ICW lab</p>
http://lod.bco-dmo.org/id/dataset-parameter/474342.rdf
Name: Na
Units: millimoles
Description: <p>Sodium ion concentration as measured by the ICW lab</p>
http://lod.bco-dmo.org/id/dataset-parameter/474343.rdf
Name: NH4
Units: millimoles
Description: <p>Ammonium ion concentration as measured by the ICW lab</p>
http://lod.bco-dmo.org/id/dataset-parameter/474344.rdf
Name: K
Units: millimoles
Description: <p>Potassium ion concentration as measured by the ICW lab</p>
http://lod.bco-dmo.org/id/dataset-parameter/474345.rdf
Name: Mg_IC
Units: millimoles
Description: <p>Magnesium ion concentration as measured by the ICW lab</p>
http://lod.bco-dmo.org/id/dataset-parameter/474346.rdf
Name: Mg_USC
Units: millimoles
Description: <p>Magnesium ion concentration as measured by the USC lab</p>
http://lod.bco-dmo.org/id/dataset-parameter/474347.rdf
Name: Ca_IC
Units: millimoles
Description: <p>Calcium ion concentration as measured by the ICW lab</p>
http://lod.bco-dmo.org/id/dataset-parameter/474348.rdf
Name: Ca_USC
Units: millimoles
Description: <p>Calcium ion concentration as measured by the USC lab</p>
http://lod.bco-dmo.org/id/dataset-parameter/474349.rdf
Name: Cl
Units: millimoles
Description: <p>Chloride ion concentration as measured by the ICW lab</p>
http://lod.bco-dmo.org/id/dataset-parameter/474350.rdf
Name: Br
Units: millimoles
Description: <p>Bromide ion concentration as measured by the ICW lab</p>
http://lod.bco-dmo.org/id/dataset-parameter/474351.rdf
Name: F
Units: millimoles
Description: <p>Flouride ion concentration as measured by the ICW lab</p>
http://lod.bco-dmo.org/id/dataset-parameter/474352.rdf
Name: NO3
Units: millimoles
Description: <p>Nitrate concentration as measured by the ICW lab</p>
http://lod.bco-dmo.org/id/dataset-parameter/474353.rdf
Name: PO4
Units: millimoles
Description: <p>Phosphate concentration as measured by the ICW lab</p>
http://lod.bco-dmo.org/id/dataset-parameter/474354.rdf
Name: SO4
Units: millimoles
Description: <p>Sulphate concentration as measured by the ICW lab</p>
http://lod.bco-dmo.org/id/dataset-parameter/474366.rdf
Name: Sr
Units: micromoles
Description: <p>Strontium ion concentration as measured by the USC lab</p>
http://lod.bco-dmo.org/id/dataset-parameter/474367.rdf
Name: Cs
Units: micromoles
Description: <p>Cesium ion concentration as measured by the USC lab</p>
http://lod.bco-dmo.org/id/dataset-parameter/474368.rdf
Name: Rb
Units: micromoles
Description: <p>Rubidium ion concentration as measured by the USC lab</p>
http://lod.bco-dmo.org/id/dataset-parameter/474369.rdf
Name: Ba
Units: micromoles
Description: <p>Barium ion concentration as measured by the USC lab</p>
http://lod.bco-dmo.org/id/dataset-parameter/474370.rdf
Name: Mn
Units: micromoles
Description: <p>Manganese ion concentration as measured by the USC lab</p>
http://lod.bco-dmo.org/id/dataset-parameter/474371.rdf
Name: Fe
Units: micromoles
Description: <p>Iron ion concentration as measured by the USC lab</p>
http://lod.bco-dmo.org/id/dataset-parameter/474372.rdf
Name: Ni
Units: micromoles
Description: <p>Nickel ion concentration as measured by the USC lab</p>
http://lod.bco-dmo.org/id/dataset-parameter/474373.rdf
Name: Cu
Units: micromoles
Description: <p>Copper ion concentration as measured by the USC lab</p>
http://lod.bco-dmo.org/id/dataset-parameter/474374.rdf
Name: Si
Units: micromoles
Description: <p>Silicon ion concentration as measured by the USC lab</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
4081
https://datadocs.bco-dmo.org/file/P66GwBXfoq4Woo/vent_chem.csv
vent_chem.csv
Primary data file for dataset ID 474322
download
https://osprey.bco-dmo.org/dataset/474322/data/download
download
onLine
dataset
<p>Fluid samples were collected from the water column close to the shallow-water venting sites and from the interstitial waters of all cores at 2 cm intervals. Fluids and gases were also sampled from the subaerial sites. Samples returned to the Geophysical Lab were analyzed to determine dissolved concentrations of: organic acids and a range of major anions/cations species (e.g. SO42-, PO42-, SNH3, NO3-, Cl-, Na+, K+, Ca2+, and Mg2+) including trace elements and metals. We used ion chromatography (Metrohm "MIC-3 Advanced IC, Metrosep A supp 7-250/16-250; C4- 250 columns). Fluids were analyzed for metal and trace element concentrations at the MC-ICP-MS facility of Prof. Michael Bizimis at the University of South Carolina.&nbsp;<br />
&nbsp;</p>
<p><strong>Relevant References:</strong></p>
<p>Mustafa Yücel, Stefan M. Sievert, Costantino Vetriani, Dionysis I. Foustoukos, Donato Giovannelli, Nadine Le Bris. Eco-geochemical dynamics of a shallow-water hydrothermal vent system at Milos Island, Aegean Sea (Eastern Mediterranean). Chemical Geology 356 (2013) 11-20.</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
temperature probe
temperature probe
PI Supplied Instrument Name: temperature probe PI Supplied Instrument Description:Hand-held temperature probe Instrument Name: Water Temperature Sensor Instrument Short Name:Water Temp Sensor Instrument Description: General term for an instrument that measures the temperature of the water with which it is in contact (thermometer). Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/134/
Deployment: Milos_vents_2012
Milos_vents_2012
shoreside Milos_vents
island
Milos_vents_2012
Dionysis Foustoukos
Carnegie Institution for Science
shoreside Milos_vents
island