http://lod.bco-dmo.org/id/dataset/475848
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2014-01-17
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Oxygen consumption and metabolic enzyme activity in the Antarctic coral, Flabellum impensum from RVIB Nathaniel B. Palmer NBP1002 in the Western Antarctic Peninsula, Mar.- May 2010 (CARIACO-micronek project, Antarctic_micronek project)
2014-01-17
publication
2014-01-17
revision
BCO-DMO Linked Data URI
2014-01-17
creation
http://lod.bco-dmo.org/id/dataset/475848
Dr Joseph J. Torres
University of South Florida
principalInvestigator
Dr Lara V. Henry
University of South Florida
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Torres, J. J., Henry, L. V. (2014) Oxygen consumption and metabolic enzyme activity in the Antarctic coral, Flabellum impensum from RVIB Nathaniel B. Palmer NBP1002 in the Western Antarctic Peninsula, Mar.- May 2010 (CARIACO-micronek project, Antarctic_micronek project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2014-01-17 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/475848 [access date]
O2 consumption and metabolic enzyme activity in the Antarctic coral, Flabellum impensum Dataset Description: <p>This study characterizes the metabolism of the endemic Antarctic coral <em>Flabellum impensum</em> by measuring oxygen consumption and metabolic enzyme activity.&nbsp; This dataset is a comparison of<em> Flabellum impensum</em> metabolism with other corals reported in the literature and is from a table extracted from the paper,</p>
<p>Metabolism of an Antarctic solitary coral, <em>Flabellum impensum</em>. 2013, by Lara V. Henry and Joseph J. Torres found in the Journal of Experimental Marine Biology and Ecology, 449 (2013) 17-21.&nbsp; (Table 1)</p>
<p>http://dx.doi.org/10.1016/j.jembe.2013.08.010</p>
<p>Studies referred to in Table 1:</p>
<p>L. Buhl-Mortensen, P.B. Mortensen, S. Armsworthy, and D. Jackson, 2007.&nbsp; Field observations of <em>Flabellum</em> spp. and laboratory study of the behavior and respiration of <em>Flabellum alabastrum</em>.&nbsp; Bull. Mar. Sci., 81 (3) (2007), pp. 543–552.</p>
<p>P.S. Davies, 1980.&nbsp; Short-term growth measurements of corals using an accurate buoyant weighing technique.&nbsp; Mar. Biol., 101 (1989), pp. 389–395.</p>
<p>B.T. Hargrave, V.E. Kostylev, and C.M. Hawkins, 2004.&nbsp; Benthic epifauna assemblages, biomass, and respiration in The Gully region on the Scotian Shelf, NW Atlantic Ocean.&nbsp; Mar. Ecol. Prog. Ser., 270 (2004), pp. 55–70.</p>
<p>T. Ikeda, B. Bruce, 1986.&nbsp; Metabolic activity and elemental composition of krill and other zooplankton from Prydz Bay, Antarctica, during early summer (November–December).&nbsp; Mar. Biol., 92 (1986), pp. 545–555.</p>
<p>K.M. Scolardi, K.L. Daly, E.A. Pakhomov, J.J. Torres, 2006. Feeding ecology and metabolism of the Antarctic cydippid ctenophore <em>Callianira antarctica.</em>&nbsp; Mar. Ecol. Prog. Ser., 317 (2006), pp. 111–126</p>
<p>J.M. Shick, 1990. Diffusion limitation and hyperoxic enhancement of oxygen consumption in zooxanthellate sea anemones, zoanthids, and corals.&nbsp; Biol. Bull., 179 (1990), pp. 148–158.</p>
<p>E.V. Thuesen, and J.J. Childress, 1994. Oxygen consumption rates and metabolic enzyme activities of oceanic California medusae in relation to body size and habitat depth.&nbsp; Biol. Bull., 187 (1994), pp. 84–98.</p> Methods and Sampling: <p>Corals were collected with a 10 m otter trawl by the RVIB Nathaniel B. Palmer off the Western Antarctic Peninsula during March 2010.&nbsp; The corals were collected off Anvers Island at 600 m and off Charcot Islands at 200 meters depth.</p>
<p>Measurements were taken on 9 specimens.</p>
<p>(See Henry and Torres paper cited above for more details.)</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-0727833 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=0727833
Funding provided by NSF Antarctic Sciences (NSF ANT) Award Number: ANT-0741348 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=0741348
completed
Dr Joseph J. Torres
University of South Florida
home/ofc: 828-877-5235
P.O. Box 308
Brevard
NC
28712
USA
jjtorres@usf.edu
pointOfContact
Dr Lara V. Henry
University of South Florida
+1 727 553 1169
lvhenry@mail.usf.edu
pointOfContact
asNeeded
Dataset Version: 1
Unknown
Species
Animal_group
O2_consumption
Tsubresp
O2_consumption_SE
CS_activity
Cs_activity_SE
LDH_Activity
LDH_Activity_SE
MDH_Activity
MDH_Activity_SE
Tsubenzymes
Source_Year
theme
None, User defined
species scientific name (binomial)
animal group (category)
O2 consumption
water temperature at measurement depth
standard error
metabolic_enzyme
reference_paper
featureType
BCO-DMO Standard Parameters
NBP1002
service
Deployment Activity
Western Antarctic Peninsula
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Micronekton of the Cariaco Basin: Adaptation to a severe oxygen minimum
https://osprey.bco-dmo.org/project/471743
Micronekton of the Cariaco Basin: Adaptation to a severe oxygen minimum
<p>The major goals of this project were changed somewhat when collecting data in the Cariaco region of the Caribbean was not possible due to "severe problems with infrastructure at the proposed study site" (from Final Report).</p>
<p>The first goal was expanded to include the study of species of coral from the Antarctic, the Gulf of Mexico and the coastal waters of Puerto Rico to shed light on metabolic adaptation to depth, darkness, and temperature. </p>
<p>Coral habitats span the range from tropical to polar, extremely shallow to thousands of<br />
feet deep. The differences in light, temperature, and depth experienced in these varied<br />
habitats likely affect the metabolic rates of the corals residing there. The metabolism of<br />
three coral species from different habitats were examined to elucidate the effects<br />
of these environmental parameters on an under-studied aspect of coral biology.</p>
<p>The second goal was to determine the adaptation to temperature of tropical and subtropical teleosts at the mitochondrial level.</p>
<p>The maintenance of a functional energy balance in ectothermic fauna can be<br />
challenging in a thermally disparate environment. The present work describes how the<br />
energetic machinery in the cell, particularly the mitochondrion, is affected by<br />
temperature changes. More specifically, this work determined how environmental<br />
temperature affects the mitochondrial energetic performance of fishes from disparate<br />
thermal regimes.</p>
<p>(excerpted from the Final Report for Award 0727883.</p>
CARIACO-micronek
largerWorkCitation
project
Possible climate-induced change in the distribution of Pleuragramma antarcticum on the Western Antarctic Peninsula Shelf
https://osprey.bco-dmo.org/project/474280
Possible climate-induced change in the distribution of Pleuragramma antarcticum on the Western Antarctic Peninsula Shelf
<p><em>Pleuragramma antarcticu</em>m, the Antarctic silverfish, plays a key role in the trophic pyramid of the Antarctic coastal ecosystem, acting as food for larger fishes, flying and non-flying seabirds, pinnipeds, and whales. In turn, they are predators on coastal euphausiids, including both <em>Euphausia superba</em> and <em>E.</em> <em>crystallorophias</em>. Historically, <em>Pleuragramma</em> have been an important food source for Adélie Penguins of the Western Antarctic Peninsula (WAP), but during the last decade <em>Pleuragramma</em> have disappeared from the Adélie diet. We suggest that <em>Pleuragramma</em>'s absence from the diets of top predators is linked to the declining sea ice canopy, which serves as a nursery for eggs and larvae during the austral spring. The research will investigate four hydrographic regimes over the WAP continental shelf with the following features: (1) persistent gyral flows that act to retain locally spawned larvae, (2) spring sea ice that has declined in recent years (3) the prevalence of adult silverfish, and (4) the presence of breeding Adélie penguins whose diets vary in the proportions of silverfish consumed. The research will evaluate the importance of local reproduction versus larval advection, and the extent to which populations in the subregions of study are genetically distinct, via analysis of population structure, otolith microchemistry and molecular genetics of fish. The <em>Pleuragramma</em> data will be compared with penguin diet samples taken synoptically. </p>
Antarctic_micronek
largerWorkCitation
project
eng; USA
oceans
Western Antarctic Peninsula
2010-03-01
2010-05-01
From projects that focused on the following 2 locations: 1. Eastern Gulf of Mexico, Southeastern Atlantic, Western Antarctic Peninsula shelf 2. Western Antarctic Peninsula
0
BCO-DMO catalogue of parameters from Oxygen consumption and metabolic enzyme activity in the Antarctic coral, Flabellum impensum from RVIB Nathaniel B. Palmer NBP1002 in the Western Antarctic Peninsula, Mar.- May 2010 (CARIACO-micronek project, Antarctic_micronek project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/476053.rdf
Name: Species
Units: alphanumeric
Description: <p>Animal species studied.</p>
http://lod.bco-dmo.org/id/dataset-parameter/476082.rdf
Name: Animal_group
Units: alphanumeric
Description: <p>The group of animals or life style of the species described or which the species belongs to.</p>
http://lod.bco-dmo.org/id/dataset-parameter/476154.rdf
Name: O2_consumption
Units: micromoles O2 per gram(wet weight) per hour
Description: <p>mean Oxygen consumption of animal. Measured after 100 minute had elapsed to give coral respiration a chance to stabilize.</p>
http://lod.bco-dmo.org/id/dataset-parameter/476186.rdf
Name: Tsubresp
Units: degrees Centigrade
Description: <p>Temperature of the seawater environment for the respiration experiments.</p>
http://lod.bco-dmo.org/id/dataset-parameter/476194.rdf
Name: O2_consumption_SE
Units: micromoles O2 per gram(wet weight) per hour
Description: <p>Mean Oxygen Consumption Standard Error</p>
http://lod.bco-dmo.org/id/dataset-parameter/476252.rdf
Name: CS_activity
Units: units per gram
Description: <p>Mean Citrate synthase (CS) activity. Citrate synthase is a metabolic enzyme that regulates the first step in the Krebs Cycle. Activity of this enzyme is an indicator of aerobic function. </p>
http://lod.bco-dmo.org/id/dataset-parameter/476253.rdf
Name: Cs_activity_SE
Units: units per gram
Description: <p>Mean Citrate synthase (CS) standard error.</p>
http://lod.bco-dmo.org/id/dataset-parameter/476254.rdf
Name: LDH_Activity
Units: units per gram
Description: <p>Mean Lactate hydrogenase activity (LDH). Lactate dehydrogenase is the terminal enzyme in anaerobic glycolysis. Its activity in an organism is an indicator of the individual's anaerobic capacity.</p>
http://lod.bco-dmo.org/id/dataset-parameter/476255.rdf
Name: LDH_Activity_SE
Units: units per gram
Description: <p>Mean Lactate dehydrogenase (LDH) standard error.</p>
http://lod.bco-dmo.org/id/dataset-parameter/476256.rdf
Name: MDH_Activity
Units: units per gram
Description: <p>Mean Malate dehydrogenase (MDH) activity. Malate dehydrogenase (MDH) plays a role in the Krebs cycle in addition to other metabolic functions. MDH activity is an indicator of aerobic function.</p>
http://lod.bco-dmo.org/id/dataset-parameter/476257.rdf
Name: MDH_Activity_SE
Units: units per gram
Description: <p>Mean Malate dehydrogenase (MDH) standard error.</p>
http://lod.bco-dmo.org/id/dataset-parameter/476259.rdf
Name: Tsubenzymes
Units: degrees Centigrade
Description: <p>Temperature of medium recording the enzyme activity.</p>
http://lod.bco-dmo.org/id/dataset-parameter/476276.rdf
Name: Source_Year
Units: alphanumeric
Description: <p>Studies cited in the paper that represents these data.</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
4171
https://datadocs.bco-dmo.org/file/WWW1EMkuj056WN/coral_metabolism.csv
coral_metabolism.csv
Primary data file for dataset ID 475848
download
https://osprey.bco-dmo.org/dataset/475848/data/download
download
onLine
dataset
<p>Corals were collected with a 10 m otter trawl by the RVIB Nathaniel B. Palmer off the Western Antarctic Peninsula during March 2010.&nbsp; The corals were collected off Anvers Island at 600 m and off Charcot Islands at 200 meters depth.</p>
<p>Measurements were taken on 9 specimens.</p>
<p>(See Henry and Torres paper cited above for more details.)</p>
Specified by the Principal Investigator(s)
<p>Individuals with no signs of trauma were allowed to recover in pre-chilled seawater in 0 degrees from 12 to 22 hours before being used in experiments.</p>
<p>(See Henry and Torres paper cited above for more details.)</p>
Specified by the Principal Investigator(s)
Version 1:
Final review and additional metadata were requested from the data submitter but were not provided. There are no locations (lats, lons) and no times associated with the data. There are no known issues identified in the data.
The dataset and accompanying metadata were published following BCO-DMO procedures (as of the version date 2014-01-17). Geolocation name and year-month range were added to the metadata.
Specified by BCO-DMO Data Managers
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Cruise: NBP1002
NBP1002
Community Standard Description
International Council for the Exploration of the Sea
RVIB Nathaniel B. Palmer
vessel
NBP1002
Dr Joseph J. Torres
University of South Florida
http://dmoserv3.bco-dmo.org/data_docs/Antarctic_micronek/NBP10-02SitRepWhole.docx
Report describing NBP1002
Community Standard Description
International Council for the Exploration of the Sea
RVIB Nathaniel B. Palmer
vessel