<div><p>Sample locations: Hydrate Ridge, Oregon Coast, USA; Eel River Basin and Santa Monica Basin, California Coast, USA; Costa Rica Margins.</p></div>
16S rRNA gene and particulate monooxygenase diversity
<div><p>PCR amplicon data pertaining to this project has been submitted to Genbank at the National Center for Biotechnology Information (NCBI)- <a href="http://www.ncbi.nlm.nih.gov">www.ncbi.nlm.nih.gov</a> referenced by the following accession numbers:</p>
<p>Three Datasets:</p>
<p>1) Archaeal and Bacterial 16S rRNA gene sequences from carbonate rocks and sediment near the methane seeps of Hydrate Ridge, OR. In preparation, released by NCBI March 2014. NCBI accession numbers KF616507-KF616827.</p>
<p><a href="http://www.ncbi.nlm.nih.gov/nuccore/?term=KF616507%3AKF616827+[ACCN]" target="_blank">http://www.ncbi.nlm.nih.gov/nuccore/?term=KF616507%3AKF616827+[ACCN]</a></p>
<p>2) Particulate methane monooxygenase gene and 16S rRNA gene sequences of methanotrophs – water column Costa Rica Margin. Tavormina et al. 2013, Environmental Microbiology Reports (2013) 5(3), 414–423 doi:10.1111/1758-2229.12025. NCBI accession numbers JX569083-JX569145.</p>
<p><a href="http://www.ncbi.nlm.nih.gov/nuccore/?term=JX569083%3AJX569145+[ACCN]" target="_blank">http://www.ncbi.nlm.nih.gov/nuccore/?term=JX569083%3AJX569145+[ACCN]</a></p>
<p>3) Particulate methane monooxygenase and 16S rRNA genes sequences of bacteria from overlying water, sediment and carbonates near methane seeps Santa Monica Basin and Eel River Basin, CA. Tavormina et al. 2008, Appl. Environ. Microbiol. 2008, 74(13):3985. DOI: 10.1128/AEM.00069-08. NCBI accession numbers EU444837-EU444876.</p>
<p><a href="http://www.ncbi.nlm.nih.gov/nuccore/?term=EU444837%3AEU444876+[ACCN]" target="_blank">http://www.ncbi.nlm.nih.gov/nuccore/?term=EU444837%3AEU444876+[ACCN]</a></p></div>
16S rRNA gene and particulate monooxygenase diversity
<div><p>Sequenced using Sanger method by Laragen, <a href="http://www.laragen.com/" target="_blank">http://www.laragen.com/</a>.</p>
<p>Edited in software programs Sequencher, Mothur and ARB.</p>
<p><strong>Relevant References:</strong></p>
<p>Patricia L. Tavormina, William Ussler III, Joshua A. Steele, Stephanie A. Connon, Martin G. Klotz and Victoria J. Orphan. Abundance and distribution of diverse membrane-bound monooxygenase (Cu-MMO) genes within the Costa Rica oxygen minimum zone. Environmental Microbiology Reports. 2013, 5(3), 414-423. doi:10.1111/1758-2229.12025.<br />
<br />
Patricia L. Tavormina, William Ussler III and Victoria J.Orphan. Planktonic and Sediment-Associated Aerobic Methanotrophs in Two Seep Systems along the North American Margin. Appl. Environ. Microbiol. 2008, 74(13):3985. doi:10.1128/AEM.00069-08.</p></div>
489401
16S rRNA gene and particulate monooxygenase diversity
2014-01-31T15:47:07-05:00
2014-01-31T15:47:07-05:00
2023-07-07T16:10:26-04:00
urn:bcodmo:dataset:489401
16S rRNA gene and particulate monooxygenase diversity from R/V Atlantis AT15-68, AT18-10, AT15-44, AT15-59 off Costa Rica and USA, Pacific Ocean, 2009-2011 (Authigenic Carbonate Ecosystems project)
false
Orphan, V. J. (2014) 16S rRNA gene and particulate monooxygenase diversity from R/V Atlantis AT15-68, AT18-10, AT15-44, AT15-59 off Costa Rica and USA, Pacific Ocean, 2009-2011 (Authigenic Carbonate Ecosystems project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 2014-01-31) Version Date 2014-01-31 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/489401 [access date]
true
2014-01-31
false
2014-01-31
HTML
https://www.bco-dmo.org/dataset/489401
text/html
Datapackage.json
Frictionless Data Package
https://www.bco-dmo.org/dataset/489401/datapackage.json
application/vnd.datapackage+json
PDF
https://www.bco-dmo.org/dataset/489401/Dataset_description.pdf
application/pdf
JSON-LD
https://www.bco-dmo.org/dataset/489401.json
application/ld+json
Turtle
https://www.bco-dmo.org/dataset/489401.ttl
text/turtle
RDF/XML
https://www.bco-dmo.org/dataset/489401.rdf
application/rdf+xml
ISO 19115-2 (NOAA Profile)
https://www.bco-dmo.org/dataset/489401/iso
application/xml
http://www.isotc211.org/2005/gmd-noaa
Dublin Core
https://www.bco-dmo.org/dataset/489401/dublin-core
application/xml
http://purl.org/dc/elements/1.1/
489401
http://lod.bco-dmo.org/id/dataset/489401