Glaucus specimen collection locations, museum vouchers and GenBank accession numbers from a global sample set (Neuston Phylogeny project)

Website: https://www.bco-dmo.org/dataset/505458
Version: 2014-02-14

Project
» Community Phylogeny and Global Phylogeography of the Neuston (Neuston Phylogeny)
ContributorsAffiliationRole
O'Foighil, DiarmaidUniversity of MichiganPrincipal Investigator
Copley, NancyWoods Hole Oceanographic Institution (WHOI BCO-DMO)BCO-DMO Data Manager


Dataset Description

Nudibranch (mostly Glaucus spp.) specimens were examined for molecular analyses, with collection locations, museum vouchers and GenBank accession numbers for rRNA-16S and mtCOI.

The following species were collected from various oceanic gyres: Glaucus atlanticus, Glaucus marginatus, Glaucus bennettae, Glaucus thompsoni, Glaucus mcfarlanei, Hermosita hakunamatata, Learchis poica, Favorinus elenalexarium. 


Methods & Sampling

See [reference?] for methodology.


Data Processing Description

See [reference?] for methodology.

Relevant References:

Celia K. C. Churchill, Ángel Valdés and Diarmaid Ó Foighil (2014) Afro-Eurasia and the Americas present barriers to gene flow for the cosmopolitan neustonic nudibranch Glaucus atlanticus. Marine Biology DOI 10.1007/s00227-014-2389-7.

Celia K. C. Churchill, Alvin Alejandrino, A´ngel Valde´s and Diarmaid O´ Foighil (2013) Parallel changes in genital morphology delineate cryptic diversification of planktonic nudibranchs. Proc R Soc B:280: 20131224. http://dx.doi.org/10.1098/rspb.2013.1224.

Celia K. C. Churchill, Ellen E. Strong and Diarmaid O´Foighil (2011) Hitchhiking juveniles in the rare neustonic gastropod Recluzia cf. jehennei (Janthinidae). Journal of Molluscan Studies (2011) 0: 1-4. doi:10.1093/mollus/eyr020

 


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Data Files

File
Glaucus_vouch_acc_nums.csv
(Comma Separated Values (.csv), 6.60 KB)
MD5:13b217d3717b73a679b2c7671095125b
Primary data file for dataset ID 505458

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Parameters

ParameterDescriptionUnits
speciesgenus and species name unitless
isolateisolate code unitless
vouchermuseum voucher code unitless
gyre_systemocean gyre unitless
latlatitude; north is positive decimal degrees
lonlonitude; east is positive decimal degrees
rRNA_16SGenBank accession number for rRNA-16S unitless
mtCOIGenBank accession number for mitochondrial cytochrome c oxidase subunit I unitless
commentcomments unitless


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Instruments

Dataset-specific Instrument Name
Automated Sequencer
Generic Instrument Name
Automated DNA Sequencer
Dataset-specific Description
ABI 3730xl (Applied Biosystems, Inc.)
Generic Instrument Description
General term for a laboratory instrument used for deciphering the order of bases in a strand of DNA. Sanger sequencers detect fluorescence from different dyes that are used to identify the A, C, G, and T extension reactions. Contemporary or Pyrosequencer methods are based on detecting the activity of DNA polymerase (a DNA synthesizing enzyme) with another chemoluminescent enzyme. Essentially, the method allows sequencing of a single strand of DNA by synthesizing the complementary strand along it, one base pair at a time, and detecting which base was actually added at each step.


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Deployments

OFoighil_2014

Website
Platform
OFoighil_2014
Description
Mollusc genetic analyses from globally collected samples.


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Project Information

Community Phylogeny and Global Phylogeography of the Neuston (Neuston Phylogeny)

Coverage: 5 subtropical gyre systems: North Atlantic, South Atlantic, North Pacific, South Pacific, Indian Ocean.


Abstract:

This project aims to construct the first marine community phylogeny. It is inspired by the integrative perspective that lies at the core of the modern concept of biodiversity. Empirical realization of this integration requires that study systems be simple enough to be tractable, yet (ideally) contain compelling ecological and evolutionary phenomena. The target marine community, the neuston, embodies these characteristics to an exceptional degree. It consists of a relatively small number of interacting species that drift at the water/atmosphere interface of the planet's subtropical gyres (40% of oceanic surface area) and play an important role in open-ocean epipelagic food webs. The ecological base of the neuston community is an endosymbiosis involving chondrophore cnidarian hosts (Porpitidae) and their dinoflagellate photosymbionts. Chondrophores are preyed upon by a variety of predators, chief among them two lineages of highly specialized gastropods (Janthinidae and Glaucinae). This prominent open ocean community has been poorly studied, apart from its resident insect genus Halobates. The investigator aims to complete a combined phylogeny/phylogeography of neuston taxa across three trophic levels (photosymbionts, chondrophore hosts, predatory gastropods) and all 5 subtropical gyre systems. The two main goals of the community phylogeny section are to determine the evolutionary origins of the photosymbiosis, and to establish the benthic sister lineages of both gastropod lineages in order to identify the synapomorphic changes associated with ancestral ecological transitions from benthos to neuston. The primary aims of the phylogeographic section are to establish the spatial scale of speciation for the target neustonic taxa, and to test three hypotheses of within-species genetic structuring: global panmixis; ocean basin panmixis; within gyre panmixis. The investigator has developed a multi-faceted sampling strategy that involves ichthyoplankton research colleagues in multiple gyres systems, the bi-coastal, ocean-going ships and students of the Woods Hole Semester at Sea program, national and international museum collections, and an informal network of colleagues worldwide that will sample spontaneous neuston stranding event. He has also established collaborative relationships with colleagues expert in cnidarian, nudibranch, caenogastropod and epitoniid diversity, who will work closely with him on their respective groups within the neuston and, for gastropods, also within benthic sister lineages. To-date, preliminary samples from 3 of the 5 gyres have yielded results that not only demonstrate the feasibility of the primary project goals, but also provide exciting initial insights into the generality of the photosymbiotic association, the putative benthic sister lineages of neustonic gastropods, the likely presence of cryptic species complexes, and the divergent patterns of among-gyre and among-basin genetic structuring exhibited by sister taxa.

This project has an unusually extensive student outreach component in the form of the >100 Sea Education Association (SEA) undergraduates and high school students that will participate in multiple upcoming SSV Seamans & SSV Cramer cruises and who will collect neuston taxa. The investigator will provide detailed electronic feedback to the SEA courses, in the field, so that students will be able to connect the organisms they collect with the biogeographic and evolutionary hypotheses being testing, and to determine for themselves which hypotheses the available data reject, or corroborate. One graduate and three undergraduate UM students will receive in-depth training during this project. The graduate student, Celia Churchill, has participated in offshore neuston sampling, generated much of the preliminary data, and recently presented at her first scientific meeting. She will work/train with the P.I., and also with 4 expert collaborators, directly in their laboratories for 2 of them. One UM undergraduate student has already worked directly on this project and the investigator will recruit at least two more. Substantial international outreach and collaborative activities are planned across research specialties, especially involving ichthyoplankton colleagues working in different gyre systems, as well as international museum colleagues. This study promises to significantly enhance background knowledge of the vast subtropical gyre surface ecosystem, now heavily impacted, even in mid-ocean, by the incremental accumulation of non-biodegradable, plastic flotsam. This is a major new marine conservation issue that is just now entering public discourse, e.g., see recent descriptions of the North Pacific's Giant Garbage Patch in the popular press.

PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH

Ó Foighil, D; Lee, T; Slapcinsky, J. "Prehistoric anthropogenic introduction of partulid tree snails in Papua New Guinean archipelagos," JOURNAL OF BIOGEOGRAPHY, v.38, 2011, p. 1625. View record at Web of Science

Churchill, CKC; Ó Foighil, D; Strong, EE; Gittenberger, A. "Females floated first in bubble-rafting snails," CURRENT BIOLOGY, v.21, 2011, p. R802. View record at Web of Science

Churchill, CKC; Strong, EE; Ó Foighil, D. "Hitchhiking Juveniles in the Rare Neustonic Gastropod Recluzia Cf. Jehennei (Janthinidae)," Journal Of Molluscan Studies, v.77, 2011, p. 441. View record at Web of Science

Ó Foighil, D; Li, JC; Lee, T; Johnson, P; Evans, R; Burch, JB. "Conservation Genetics of a Critically Endangered Limpet Genus and Rediscovery of an Extinct Species," PLOS ONE, v.6, 2011. View record at Web of Science

Focal Publications

Churchill, C.K., Valdés, Á. Ó Foighil, D. 2014. Afro-Eurasia and the Americas present barriers to gene flow for the cosmopolitan neustonic nudibranch Glaucus atlanticus.  Marine Biology, In Press.

Churchill, C.K., Valdés, Á. Ó Foighil, D. 2014. Molecular and morphological systematics of neustonic nudibranchs (Mollusca, Gastropoda, Glaucidae, Glaucus) with descriptions of three new cryptic species. In Press, Invertebrate Systematics.

Churchill, C.K., Alejandrino, A., Valdés, Á. Ó Foighil, D. 2013. Parallel changes in genital morphology delineate cryptic diversification of planktonic nudibranchs. Proceedings of the Royal Society B. 280:20131224. http://dx.doi.org/10.1098/rspb.2013.1224

         Exemplar media coverage: www.earthtimes.org/nature/glaucus-twin/2394/

Churchill, C.K. and Ó Foighil, D. 2013. Bubble rafting snails. McGraw-Hill Yearbook of Science and Technology 2013, pp. 56-58.

Churchill, C.K., Ó Foighil, D., Strong, E.E. and Gittenberger, A. 2011. Females floated first in bubble-rafting snails. Current Biology. 21: R802-R803. Featured on the journal cover, in Science and in multiple online media outlets, e.g., http://www.msnbc.msn.com/id/44849146/ns/technology_and_science-science/#.UPMcgY5_dsR

Churchill C.K., Strong, E.E. and Ó Foighil, D. 2011. Hitchhiking juveniles in the rare neustonic gastropod Recluzia cf. jehennei (Janthinidae). Journal of Molluscan Studies. 77:441-444.

Non-Focal publications

Li, J., Ó Foighil, D. & Park, J.K. 2013. Triton’s trident: cryptic Neogene divergences in a marine clam (Lasaea australis) correspond to Australia’s three temperate biogeographic provinces  Molecular Ecology 22:1933-1946.

         http://onlinelibrary.wiley.com/doi/10.1111/mec.12220/full

         Exemplar media: http://phys.org/news/2013-03-cryptic-clams-biologists-species-plain.html

Scott, P.V., Ó Foighil, D. & Li, J. 2013. Where’s Waldo? A new commensal species, Waldo arthuri (Mollusca: Bivalvia: Galeommatidae), from the Northeastern Pacific Ocean. Zookeys, 316:67-80.  www.pensoft.net/journals/zookeys/article/4256

         Exemplar media coverage: http://www.sciencedaily.com/releases/2013/07/130716120022.htm

         http://www.foxnews.com/science/2013/07/20/heres-waldo-strange-new-alien-like-clam-species-found/

Miura, O., Köhler, F., Lee, T., Li, J. & Ó Foighil, D. 2013. Rare, divergent Korean Semisulcospira spp. mitochondrial haplotypes have Japanese sister lineages. Journal of Molluscan Studies, 79:86-89. http://mollus.oxfordjournals.org/content/79/1/86.full.pdf+html

Li, J., Ó Foighil, D. & Middelfart, P. 2012. The evolutionary ecology of biotic association in a megadiverse bivalve superfamily: sponsorship required for permanent residency in sediment. PLoS ONE, 7(8): e42121.  Featured in multiple online media outlets, e.g., http://www.sciencedaily.com/releases/2012/08/120809090308.htm

Li, J. and Ó Foighil, D. 2012. Host-specific morphologies but no host races in the commensal bivalve Neaeromya rugifera. Invertebrate Biology, 131:197-203.



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Funding

Funding SourceAward
NSF Division of Ocean Sciences (NSF OCE)

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