http://lod.bco-dmo.org/id/dataset/505458
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2014-03-14
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Glaucus specimen collection locations, museum vouchers and GenBank accession numbers from a global sample set (Neuston Phylogeny project)
2014-02-14
publication
2014-02-14
revision
BCO-DMO Linked Data URI
2014-02-14
creation
http://lod.bco-dmo.org/id/dataset/505458
Diarmaid O'Foighil
University of Michigan
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: O'Foighil, D. (2014) Glaucus specimen collection locations, museum vouchers and GenBank accession numbers from a global sample set (Neuston Phylogeny project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 2014-02-14) Version Date 2014-02-14 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/505458 [access date]
Glaucus specimen collection locations, museum vouchers and GenBank accession numbers Dataset Description: <p>Nudibranch (mostly&nbsp;<em>Glaucus</em>&nbsp;spp.) specimens were examined for molecular analyses, with collection locations, museum vouchers and GenBank accession numbers for rRNA-16S and mtCOI.</p>
<p>The following species were collected from various oceanic gyres:&nbsp;<em>Glaucus atlanticus, Glaucus marginatus, Glaucus bennettae, Glaucus thompsoni, Glaucus mcfarlanei, Hermosita hakunamatata, Learchis poica, Favorinus elenalexarium.</em>&nbsp;</p> Methods and Sampling: <p>See [reference?] for methodology.</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-0850625 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=0850625
completed
Diarmaid O'Foighil
University of Michigan
734-647-2193
Museum of Zoology and Department of Ecology & Evolutionary Biology 1109 Geddes Avenue
Ann Arbor
MI
48109-1079
diarmaid@umich.edu
pointOfContact
asNeeded
Dataset Version: 2014-02-14
Unknown
species
isolate
voucher
gyre_system
lat
lon
rRNA_16S
mtCOI
comment
Automated Sequencer
theme
None, User defined
species
No BCO-DMO term
latitude
longitude
comments
featureType
BCO-DMO Standard Parameters
Automated DNA Sequencer
instrument
BCO-DMO Standard Instruments
OFoighil_2014
service
Deployment Activity
global sample set
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Community Phylogeny and Global Phylogeography of the Neuston
https://osprey.bco-dmo.org/project/502589
Community Phylogeny and Global Phylogeography of the Neuston
<p>Abstract:</p>
<p>This project aims to construct the first marine community phylogeny. It is inspired by the integrative perspective that lies at the core of the modern concept of biodiversity. Empirical realization of this integration requires that study systems be simple enough to be tractable, yet (ideally) contain compelling ecological and evolutionary phenomena. The target marine community, the neuston, embodies these characteristics to an exceptional degree. It consists of a relatively small number of interacting species that drift at the water/atmosphere interface of the planet's subtropical gyres (40% of oceanic surface area) and play an important role in open-ocean epipelagic food webs. The ecological base of the neuston community is an endosymbiosis involving chondrophore cnidarian hosts (Porpitidae) and their dinoflagellate photosymbionts. Chondrophores are preyed upon by a variety of predators, chief among them two lineages of highly specialized gastropods (Janthinidae and Glaucinae). This prominent open ocean community has been poorly studied, apart from its resident insect genus Halobates. The investigator aims to complete a combined phylogeny/phylogeography of neuston taxa across three trophic levels (photosymbionts, chondrophore hosts, predatory gastropods) and all 5 subtropical gyre systems. The two main goals of the community phylogeny section are to determine the evolutionary origins of the photosymbiosis, and to establish the benthic sister lineages of both gastropod lineages in order to identify the synapomorphic changes associated with ancestral ecological transitions from benthos to neuston. The primary aims of the phylogeographic section are to establish the spatial scale of speciation for the target neustonic taxa, and to test three hypotheses of within-species genetic structuring: global panmixis; ocean basin panmixis; within gyre panmixis. The investigator has developed a multi-faceted sampling strategy that involves ichthyoplankton research colleagues in multiple gyres systems, the bi-coastal, ocean-going ships and students of the Woods Hole Semester at Sea program, national and international museum collections, and an informal network of colleagues worldwide that will sample spontaneous neuston stranding event. He has also established collaborative relationships with colleagues expert in cnidarian, nudibranch, caenogastropod and epitoniid diversity, who will work closely with him on their respective groups within the neuston and, for gastropods, also within benthic sister lineages. To-date, preliminary samples from 3 of the 5 gyres have yielded results that not only demonstrate the feasibility of the primary project goals, but also provide exciting initial insights into the generality of the photosymbiotic association, the putative benthic sister lineages of neustonic gastropods, the likely presence of cryptic species complexes, and the divergent patterns of among-gyre and among-basin genetic structuring exhibited by sister taxa.</p>
<p>This project has an unusually extensive student outreach component in the form of the >100 Sea Education Association (SEA) undergraduates and high school students that will participate in multiple upcoming SSV Seamans & SSV Cramer cruises and who will collect neuston taxa. The investigator will provide detailed electronic feedback to the SEA courses, in the field, so that students will be able to connect the organisms they collect with the biogeographic and evolutionary hypotheses being testing, and to determine for themselves which hypotheses the available data reject, or corroborate. One graduate and three undergraduate UM students will receive in-depth training during this project. The graduate student, Celia Churchill, has participated in offshore neuston sampling, generated much of the preliminary data, and recently presented at her first scientific meeting. She will work/train with the P.I., and also with 4 expert collaborators, directly in their laboratories for 2 of them. One UM undergraduate student has already worked directly on this project and the investigator will recruit at least two more. Substantial international outreach and collaborative activities are planned across research specialties, especially involving ichthyoplankton colleagues working in different gyre systems, as well as international museum colleagues. This study promises to significantly enhance background knowledge of the vast subtropical gyre surface ecosystem, now heavily impacted, even in mid-ocean, by the incremental accumulation of non-biodegradable, plastic flotsam. This is a major new marine conservation issue that is just now entering public discourse, e.g., see recent descriptions of the North Pacific's Giant Garbage Patch in the popular press.</p>
<p><strong>PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH</strong></p>
<p>Ó Foighil, D; Lee, T; Slapcinsky, J. "Prehistoric anthropogenic introduction of partulid tree snails in Papua New Guinean archipelagos," JOURNAL OF BIOGEOGRAPHY, v.38, 2011, p. 1625. View record at Web of Science</p>
<p>Churchill, CKC; Ó Foighil, D; Strong, EE; Gittenberger, A. "Females floated first in bubble-rafting snails," CURRENT BIOLOGY, v.21, 2011, p. R802. View record at Web of Science</p>
<p>Churchill, CKC; Strong, EE; Ó Foighil, D. "Hitchhiking Juveniles in the Rare Neustonic Gastropod Recluzia Cf. Jehennei (Janthinidae)," Journal Of Molluscan Studies, v.77, 2011, p. 441. View record at Web of Science</p>
<p>Ó Foighil, D; Li, JC; Lee, T; Johnson, P; Evans, R; Burch, JB. "Conservation Genetics of a Critically Endangered Limpet Genus and Rediscovery of an Extinct Species," PLOS ONE, v.6, 2011. View record at Web of Science</p>
<p><strong>Focal Publications</strong></p>
<p>Churchill, C.K., Valdés, Á. Ó Foighil, D. 2014. Afro-Eurasia and the Americas present barriers to gene flow for the cosmopolitan neustonic nudibranch Glaucus atlanticus. Marine Biology, In Press.</p>
<p>Churchill, C.K., Valdés, Á. Ó Foighil, D. 2014. Molecular and morphological systematics of neustonic nudibranchs (Mollusca, Gastropoda, Glaucidae, Glaucus) with descriptions of three new cryptic species. In Press, Invertebrate Systematics.</p>
<p>Churchill, C.K., Alejandrino, A., Valdés, Á. Ó Foighil, D. 2013. Parallel changes in genital morphology delineate cryptic diversification of planktonic nudibranchs. Proceedings of the Royal Society B. 280:20131224. <a href="http://dx.doi.org/10.1098/rspb.2013.1224" target="_blank">http://dx.doi.org/10.1098/rspb.2013.1224</a></p>
<p> Exemplar media coverage: <a href="http://www.earthtimes.org/nature/glaucus-twin/2394/" target="_blank">www.earthtimes.org/nature/glaucus-twin/2394/</a></p>
<p>Churchill, C.K. and Ó Foighil, D. 2013. Bubble rafting snails. McGraw-Hill Yearbook of Science and Technology 2013, pp. 56-58.</p>
<p>Churchill, C.K., Ó Foighil, D., Strong, E.E. and Gittenberger, A. 2011. Females floated first in bubble-rafting snails. Current Biology. <a href="http://www.cell.com/current-biology/abstract/S0960-9822%2811%2900886-4" target="_blank">21: R802-R803</a>. Featured on the <a href="http://www.cell.com/current-biology/issue?pii=S0960-9822%2811%29X0019-2" target="_blank">journal cover</a>, in <a href="news.sciencemag.org/sciencenow/2011/10/snails-ship-out-on-scrambled-eggs.html" target="_blank">Science</a> and in multiple online media outlets, e.g., <a href="http://www.msnbc.msn.com/id/44849146/ns/technology_and_science-science/#.UPMcgY5_dsR" target="_blank">http://www.msnbc.msn.com/id/44849146/ns/technology_and_science-science/#.UPMcgY5_dsR</a></p>
<p>Churchill C.K., Strong, E.E. and Ó Foighil, D. 2011. Hitchhiking juveniles in the rare neustonic gastropod Recluzia cf. jehennei (Janthinidae). Journal of Molluscan Studies. <a href="mollus.oxfordjournals.org/content/early/2011/07/18/mollus.eyr020.extract" target="_blank">77:441-444</a>.</p>
<p><strong>Non-Focal publications</strong></p>
<p>Li, J., Ó Foighil, D. & Park, J.K. 2013. Triton’s trident: cryptic Neogene divergences in a marine clam (Lasaea australis) correspond to Australia’s three temperate biogeographic provinces Molecular Ecology 22:1933-1946.</p>
<p> <a href="http://onlinelibrary.wiley.com/doi/10.1111/mec.12220/full" target="_blank">http://onlinelibrary.wiley.com/doi/10.1111/mec.12220/full</a></p>
<p> Exemplar media: <a href="http://phys.org/news/2013-03-cryptic-clams-biologists-species-plain.html" target="_blank">http://phys.org/news/2013-03-cryptic-clams-biologists-species-plain.html</a></p>
<p>Scott, P.V., Ó Foighil, D. & Li, J. 2013. Where’s Waldo? A new commensal species, Waldo arthuri (Mollusca: Bivalvia: Galeommatidae), from the Northeastern Pacific Ocean. Zookeys, 316:67-80. <a href="http://www.pensoft.net/journals/zookeys/article/4256" target="_blank">www.pensoft.net/journals/zookeys/article/4256</a></p>
<p> Exemplar media coverage: <a href="http://www.sciencedaily.com/releases/2013/07/130716120022.htm" target="_blank">http://www.sciencedaily.com/releases/2013/07/130716120022.htm</a></p>
<p> <a href="http://www.foxnews.com/science/2013/07/20/heres-waldo-strange-new-alien-like-clam-species-found/" target="_blank">http://www.foxnews.com/science/2013/07/20/heres-waldo-strange-new-alien-like-clam-species-found/</a></p>
<p>Miura, O., Köhler, F., Lee, T., Li, J. & Ó Foighil, D. 2013. Rare, divergent Korean Semisulcospira spp. mitochondrial haplotypes have Japanese sister lineages. Journal of Molluscan Studies, 79:86-89. <a href="http://mollus.oxfordjournals.org/content/79/1/86.full.pdf+html" target="_blank">http://mollus.oxfordjournals.org/content/79/1/86.full.pdf+html</a></p>
<p>Li, J., Ó Foighil, D. & Middelfart, P. 2012. The evolutionary ecology of biotic association in a megadiverse bivalve superfamily: sponsorship required for permanent residency in sediment. PLoS ONE, <a href="http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0042121" target="_blank">7(8): e42121</a>. Featured in multiple online media outlets, e.g., <a href="http://www.sciencedaily.com/releases/2012/08/120809090308.htm" target="_blank">http://www.sciencedaily.com/releases/2012/08/120809090308.htm</a></p>
<p>Li, J. and Ó Foighil, D. 2012. Host-specific morphologies but no host races in the commensal bivalve Neaeromya rugifera. Invertebrate Biology, <a href="http://onlinelibrary.wiley.com/doi/10.1111/j.1744-7410.2012.00268.x/full" target="_blank">131:197-203</a>.</p>
Neuston Phylogeny
largerWorkCitation
project
eng; USA
oceans
global sample set
2014-02-14
5 subtropical gyre systems: North Atlantic, South Atlantic, North Pacific, South Pacific, Indian Ocean.
0
BCO-DMO catalogue of parameters from Glaucus specimen collection locations, museum vouchers and GenBank accession numbers from a global sample set (Neuston Phylogeny project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/505467.rdf
Name: species
Units: unitless
Description: <p>genus and species name</p>
http://lod.bco-dmo.org/id/dataset-parameter/505468.rdf
Name: isolate
Units: unitless
Description: <p>isolate code</p>
http://lod.bco-dmo.org/id/dataset-parameter/505469.rdf
Name: voucher
Units: unitless
Description: <p>museum voucher code</p>
http://lod.bco-dmo.org/id/dataset-parameter/505470.rdf
Name: gyre_system
Units: unitless
Description: <p>ocean gyre</p>
http://lod.bco-dmo.org/id/dataset-parameter/505471.rdf
Name: lat
Units: decimal degrees
Description: <p>latitude; north is positive</p>
http://lod.bco-dmo.org/id/dataset-parameter/505472.rdf
Name: lon
Units: decimal degrees
Description: <p>lonitude; east is positive</p>
http://lod.bco-dmo.org/id/dataset-parameter/505473.rdf
Name: rRNA_16S
Units: unitless
Description: <p>GenBank accession number for rRNA-16S</p>
http://lod.bco-dmo.org/id/dataset-parameter/505474.rdf
Name: mtCOI
Units: unitless
Description: <p>GenBank accession number for mitochondrial cytochrome c oxidase subunit I</p>
http://lod.bco-dmo.org/id/dataset-parameter/505475.rdf
Name: comment
Units: unitless
Description: <p>comments</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
6763
https://datadocs.bco-dmo.org/file/oAAmBGJsrZM425/Glaucus_vouch_acc_nums.csv
Glaucus_vouch_acc_nums.csv
Primary data file for dataset ID 505458
download
https://osprey.bco-dmo.org/dataset/505458/data/download
download
onLine
dataset
<p>See [reference?] for methodology.</p>
Specified by the Principal Investigator(s)
<p>See [reference?] for methodology.</p>
<p><strong>Relevant References:</strong></p>
<p>Celia K. C. Churchill, Ángel Valdés and Diarmaid Ó Foighil (2014) Afro-Eurasia and the Americas present barriers to gene flow for the cosmopolitan neustonic nudibranch Glaucus atlanticus. Marine Biology DOI 10.1007/s00227-014-2389-7.</p>
<p>Celia K. C. Churchill, Alvin Alejandrino, A´ngel Valde´s and Diarmaid O´ Foighil&nbsp;(2013) Parallel changes in genital morphology delineate cryptic diversification of planktonic nudibranchs. Proc R Soc B:280: 20131224. http://dx.doi.org/10.1098/rspb.2013.1224.</p>
<p>Celia K. C. Churchill, Ellen E. Strong and Diarmaid O´Foighil (2011) Hitchhiking juveniles in the rare neustonic gastropod Recluzia cf. jehennei (Janthinidae). Journal of Molluscan Studies (2011) 0: 1-4. doi:10.1093/mollus/eyr020</p>
<p>&nbsp;</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Automated Sequencer
Automated Sequencer
PI Supplied Instrument Name: Automated Sequencer PI Supplied Instrument Description:ABI 3730xl (Applied Biosystems, Inc.) Instrument Name: Automated DNA Sequencer Instrument Short Name:Automated Sequencer Instrument Description: A DNA sequencer is an instrument that determines the order of deoxynucleotides in deoxyribonucleic acid sequences.
Deployment: OFoighil_2014
OFoighil_2014
OFoighil_2014
laboratory
OFoighil_2014
Diarmaid O'Foighil
University of Michigan
OFoighil_2014
laboratory