http://lod.bco-dmo.org/id/dataset/516441
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2014-06-06
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Accession numbers of microsatellite DNA primers and links to GenBank from Amphiprion percula and Chaetodon vagabundus
2014-06-05
publication
2014-06-05
revision
BCO-DMO Linked Data URI
2014-06-05
creation
http://lod.bco-dmo.org/id/dataset/516441
Simon Thorrold
Woods Hole Oceanographic Institution
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Thorrold, S. (2014) Accession numbers of microsatellite DNA primers and links to GenBank from Amphiprion percula and Chaetodon vagabundus. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 05 June 2014) Version Date 2014-06-05 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/516441 [access date]
Accession numbers of microsatellite DNA primers and links to GenBank. Dataset Description: <p>Accession numbers of microsatellite DNA primers and links to GenBank.</p> Methods and Sampling:
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-0928442 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=0928442
completed
Simon Thorrold
Woods Hole Oceanographic Institution
508-289-3366
266 Woods Hole Rd, MS #50
Woods Hole
MA
02543
USA
sthorrold@whoi.edu
pointOfContact
asNeeded
Dataset Version: 05 June 2014
Unknown
taxon
description
ID
GenBank_accession_number
accession_number_link
theme
None, User defined
taxon
brief description
No BCO-DMO term
accession number
featureType
BCO-DMO Standard Parameters
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Larval Dispersal and Retention Among Sub-populations of Coral Reef Fishes: A Multi-Technique Approach
https://osprey.bco-dmo.org/project/514412
Larval Dispersal and Retention Among Sub-populations of Coral Reef Fishes: A Multi-Technique Approach
<p><em>Description from NSF award abstract:</em></p>
<p>Population connectivity, the degree to which geographically-separated groups are linked by dispersal, is a critical parameter in the dynamics of marine populations. Connectivity rates determine colonization patterns of new habitats, the resiliency of populations to harvest, and the design of networks of No Take Marine Reserves (NTMRs). Quantifying exchange rates in marine organisms is extremely difficult because natal origins of adults are almost invariably unknown. This lack of knowledge is primarily due to the difficulty of conducting mark-recapture studies in species with large numbers of small pelagic offspring that suffer high initial mortality rates. This project will continue a multi-technique approach combining mass-marking of fish embryos using TRAnsgenerational Isotope Labeling (TRAIL) of otoliths and paternity analyses based on hypervariable microsatellite DNA markers to measure dispersal distances of coral reef fishes. Population connectivity will be estimated for two species (<em>Amphiprion percula</em> and <em>Chaetodon vagabundus</em>) in Kimbe Bay, Papua New Guinea.</p>
<p>Coral reef organisms are usually distributed across a mosaic of reefs that are sometimes separated by the ocean. It has been presumed that at small scales, reefs must be open populations, with significant exchange of larvae among neighboring reefs. At larger scales, populations must effectively be closed, with late-stage larvae returning to the same population as their parents. The scale over which this transition takes place is unknown. Recent evidence suggests that ecologically significant self-recruitment may occur at scales of individual reefs or islands. If accurate, these findings have important implications for management strategies for marine species, including the design of networks of NTMRs, because knowledge of dispersal distances determines the scale over which populations can be completely protected. It also determines the appropriate spacing of reserves to allow protected populations to replenish adjacent fished areas. This project will quantify population connectivity of coral reef fishes in Kimbe Bay, Papua New Guinea and broaden the spatial scale from examining the fate of larvae spawned at a single location (Kimbe Island) to examining connectivity among 5 designated NTMRs.</p>
<p>This award is funded under the American Recovery and Reinvestment Act of 2009 (Public Law 111-5).</p>
<p><strong>Publications Produced as a Result of this Project:</strong><br />
Saenz-Agudelo, P., G. P. Jones, S. R. Thorrold, and S. Planes. 2011. Detrimental effects of host anemone bleaching on anemonefish populations. <em>Coral Reefs</em>, v.30, p. 497. doi: <a href="http://dx.doi.org/10.1007/s00338-010-0716-0" target="_blank">10.1007/s00338-010-0716-0</a></p>
<p>Saenz-Agudelo, P., G. P. Jones, S. R. Thorrold, and S. Planes. 2011. Connectivity dominates larval replenishment in a coastal reef fish metapopulation<em>. Proc. Royal Soc. B</em>, v.278, p. 2954. doi: <a href="http://dx.doi.org/10.1098/rspb.2010.2780" target="_blank">10.1098/rspb.2010.2780 </a></p>
<p>Saenz-Agudelo, P., G. P. Jones, S. R. Thorrold, and S. Planes. 2012. Patterns and persistence of larval retention and connectivity in a marine fish metapopulation<em>. Molecular Ecology</em>, v.21, p. 4695. doi: <a href="http://dx.doi.org/10.1111/j.1365-294X.2012.05726.x" target="_blank">10.1111/j.1365-294X.2012.05726.x</a></p>
<p>Buston, P. M., G. P. Jones, S. Planes, and S. R. Thorrold. 2011. Probability of successful larval dispersal declines fivefold over 1 kilometre in a coral reef fish<em>. Proc. Royal Soc. B</em>, v.279. doi: <a href="http://dx.doi.org/10.1098/rspb.2011.2041" target="_blank">10.1098/rspb.2011.2041</a></p>
<p>Berumen, M. L., H. J. Walsh, N. Raventos, S. Planes, G. P. Jones, V. Starczak, and S. R. Thorrold. 2010. Otolith geochemistry does not reflect dispersal history of clownfish larvae<em>. Coral Reefs</em>, v.29, p. 883. doi: <a href="http://dx.doi.org/10.1007/s00338-010-0652-z" target="_blank">10.1007/s00338-010-0652-z</a></p>
<p>Berumen, M. L., G. Almany, S. Planes, G. P. Jones, and S. R. Thorrold. 2012. Persistence of self-recruitment and patterns of larval connectivity in a marine protected area network<em>. Ecology and Evolution</em>, v.2. doi: <a href="http://dx.doi.org/10.1002/ece3.208" target="_blank">10.1002/ece3.208</a></p>
<p>Dixson, D. L., G. P. Jones, P. L. munday, M. S. Pratchett, M. Srinivasan, S. Planes, and S. R. Thorrold. 2011. Terrestrial chemical cues help coral reef fish larvae locate settlement habitat surrounding islands<em>. Ecology and Evolution</em>, v.1, p. 586. doi: <a href="http://dx.doi.org/10.1002/ece3.53" target="_blank">10.1002/ece3.53</a></p>
<p>Harrison, H. B., D. H. Williamson, R. D. Evans, G. R. Almany, S. R. Thorrold, G. R. Russ, K. A. Feldheim, L. van Herwerden, S. Planes, M. Srinivasan, M. L. Berumen, and G. P. Jones. 2012. Larval export from marine reserves benefits fish and fisheries<em>. Current Biology</em>, v.22, p. 1023. doi: <a href="http://dx.doi.org/10.1016/j.cub.2012.04.008" target="_blank">10.1016/j.cub.2012.04.008</a></p>
<p>Roy, A. S., A. J. Frisch, C. Sims, S. R. Thorrold, and G. P. Jones. 2012. Retention of a transgenerational marker (137Ba) in tissues of adult female anemone fish and assessment of physiological stress. <em>Environmental Biology of Fishes</em>. doi: <a href="http://dx.doi.org/10.1007/s10641-012-0029-y" target="_blank">10.1007/s10641-012-0029-y</a></p>
Pop connectivity of coral reef fishes
largerWorkCitation
project
eng; USA
oceans
2014-06-05
Kimbe Bay, Papua New Guinea
0
BCO-DMO catalogue of parameters from Accession numbers of microsatellite DNA primers and links to GenBank from Amphiprion percula and Chaetodon vagabundus
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/516446.rdf
Name: taxon
Units: text
Description: <p>Taxonomic name.</p>
http://lod.bco-dmo.org/id/dataset-parameter/516447.rdf
Name: description
Units: text
Description: <p>Description of the type of genetic sequence.</p>
http://lod.bco-dmo.org/id/dataset-parameter/516448.rdf
Name: ID
Units: alphanumeric
Description:
http://lod.bco-dmo.org/id/dataset-parameter/516449.rdf
Name: GenBank_accession_number
Units: alphanumeric
Description: <p>GenBank accession number.</p>
http://lod.bco-dmo.org/id/dataset-parameter/516450.rdf
Name: accession_number_link
Units: alphanumeric
Description: <p>Hyperlink to GenBank for the accession number.</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
3962
https://datadocs.bco-dmo.org/file/m77kzD4HpW6qVr/dna_accessions.csv
dna_accessions.csv
Primary data file for dataset ID 516441
download
https://osprey.bco-dmo.org/dataset/516441/data/download
download
onLine
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact