http://lod.bco-dmo.org/id/dataset/517567
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2014-06-26
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Clone Metagenome Sequence data from R/V Ka'imikai-O-Kanaloa, R/V Kilo Moana multiple cruises near Hawaii (22.75 N, 158 W) from 2002-2009 (C-MORE project)
2014-06-06
publication
2014-06-06
revision
BCO-DMO Linked Data URI
2014-06-06
creation
http://lod.bco-dmo.org/id/dataset/517567
Edward DeLong
Massachusetts Institute of Technology
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: DeLong, E. (2014) Clone Metagenome Sequence data from R/V Ka'imikai-O-Kanaloa, R/V Kilo Moana multiple cruises near Hawaii (22.75 N, 158 W) from 2002-2009 (C-MORE project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 06 June 2014) Version Date 2014-06-06 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/517567 [access date]
Clone Metagenom Seq Dataset Description: <p>Clone and metagenomic sequences from Station ALOHA, near Hawaii (22.75 N, 158 W)</p>
<p>Data from the accession numbers listed below can be accessed from NCBI (<u><a href="http://www.ncbi.nlm.nih.gov/">http://www.ncbi.nlm.nih.gov/</a></u>).</p>
<p><strong>BioProject</strong>: <u><a href="http://www.ncbi.nlm.nih.gov/bioproject?term=16339">PRJNA16339</a></u></p>
<p><strong>GenBank accession numbers</strong><br />
GSS: Fosmid end sequences<br />
<u><a href="http://www.ncbi.nlm.nih.gov/nucgss?term=DU731018%3ADU796676%5Baccn%5D">DU731018-DU796676</a></u><br />
<u><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?holding=&amp;db=Nucleotide&amp;cmd=search&amp;term=DU800850:DU800864%5Baccn%5D">DU800850-DU800864</a></u><br />
GSS: SSU rRNA gene sequences<br />
<u><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?holding=&amp;db=Nucleotide&amp;cmd=search&amp;term=DQ300508:DQ300926%5Baccn%5D">DQ300508-DQ300926</a></u><br />
<strong>Manuscript</strong><br />
Science, 311: 496-503 (2006)</p>
<p><strong>GenBank accession numbers</strong><br />
Nucleotide: SSU rRNA gene sequences<br />
<u><a href="http://www.ncbi.nlm.nih.gov/nuccore/?term=EU360979%3AEU361729%5Baccn%5D">EU360979–EU361729</a></u><br />
<strong>Manuscript</strong><br />
Environ. Microbiol. 10:2313-30 (2008)</p>
<p><strong>GenBank accession numbers</strong><br />
Nucleotide: SSU rRNA gene sequences<br />
<u><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?holding=&amp;db=Nucleotide&amp;cmd=search&amp;term=EU016559:EU016674%5Baccn%5D">EU016559–EU016674</a></u><br />
<u><a href="http://www.ncbi.nlm.nih.gov/nuccore/ABEF00000000">ABEF00000000</a></u> marine metagenome<br />
<strong>Manuscript</strong><br />
Appl. Environ. Microbiol. 75:5345-5355 (2009)</p> Methods and Sampling:
Funding provided by US Department of Energy (DOE) Award Number: unknown C-MORE DOE
Funding provided by NSF Division of Biological Infrastructure (NSF DBI) Award Number: DBI-0424599 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=0424599
Funding provided by Gordon and Betty Moore Foundation (GBMF) Award Number: unknown C-MORE Moore
completed
Edward DeLong
Massachusetts Institute of Technology
CMORE 114
Honolulu
HI
96822
USA
edelong@hawaii.edu
pointOfContact
asNeeded
Dataset Version: 06 June 2014
Unknown
date
cruise_id
sta_name
lat
lon
BioProject
theme
None, User defined
date
Cruise identfier
station name
latitude
longitude
dataset_id
featureType
BCO-DMO Standard Parameters
KOK0220
KOK0916
KM0325
KM0627
KM0608
service
Deployment Activity
Near Hawaii (22.75 N, 158 W)
Hawaiian Islands - Stations Kahe, ALOHA, Kena and WHOTS Mooring
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Center for Microbial Oceanography: Research and Education
http://cmore.soest.hawaii.edu/
Center for Microbial Oceanography: Research and Education
<h3>Project summary</h3>
<p>The <strong>Center for Microbial Oceanography: Research and Education</strong> (C-MORE) is a recently established (August 2006; NSF award: EF-0424599) NSF-sponsored Science and Technology Center designed to facilitate a more comprehensive understanding of the diverse assemblages of microorganisms in the sea, ranging from the genetic basis of marine microbial biogeochemistry including the metabolic regulation and environmental controls of gene expression, to the processes that underpin the fluxes of carbon, related bioelements and energy in the marine environment. Stated holistically, C-MORE's primary mission is: <em>Linking Genomes to Biomes</em>.</p>
<p>We believe that the time is right to address several major, long-standing questions in microbial oceanography. Recent advances in the application of molecular techniques have provided an unprecedented view of the structure, diversity and possible function of sea microbes. By combining these and other novel approaches with more well-established techniques in microbiology, oceanography and ecology, it may be possible to develop a meaningful predictive understanding of the ocean with respect to energy transduction, carbon sequestration, bioelement cycling and the probable response of marine ecosystems to global environmental variability and climate change. The strength of C-MORE resides in the synergy created by bringing together experts who traditionally have not worked together and this, in turn, will facilitate the creation and dissemination of new knowledge on the role of marine microbes in global habitability.</p>
<p>The new Center will design and conduct novel research, broker partnerships, increase diversity of human resources, implement education and outreach programs, and utilize comprehensive information about microbial life in the sea. The Center will bring together teams of scientists, educators and community members who otherwise do not have an opportunity to communicate, collaborate or design creative solutions to long-term ecosystem scale problems. The Center's research will be organized around four interconnected themes:</p>
<ul>
<li>(Theme I) microbial biodiversity,</li>
<li>(Theme II) metabolism and C-N-P-energy flow,</li>
<li>(Theme III) remote and continuous sensing and links to climate variability, and</li>
<li>(Theme IV) ecosystem modeling, simulation and prediction.</li>
</ul>
<p> Each theme will have a leader to help coordinate the research programs and to facilitate interactions among the other related themes. The education programs will focus on pre-college curriculum enhancements, in service teacher training and formal undergraduate/graduate and post-doctoral programs to prepare the next generation of microbial oceanographers. The Center will establish and maintain creative outreach programs to help diffuse the new knowledge gained into society at large including policymakers. The Center's activities will be dispersed among five partner institutions:</p>
<ul>
<li>Massachusetts Institute of Technology,</li>
<li>Woods Hole Oceanographic Institution,</li>
<li>Monterey Bay Aquarium Research Institute,</li>
<li>University of California at Santa Cruz and</li>
<li>Oregon State University</li>
</ul>
<p>and will be coordinated at the University of Hawaii at Manoa.</p>
<h4>Related Files:</h4>
<p><a href="http://bcodata.whoi.edu/C-MORE/C-MORE_SIP_ver_09-01-2008.pdf">Strategic plan (PDF file)</a></p>
C-MORE
largerWorkCitation
project
eng; USA
oceans
Near Hawaii (22.75 N, 158 W); Hawaiian Islands - Stations Kahe, ALOHA, Kena and WHOTS Mooring
2014-06-06
North Pacific Subtropical Gyre (large region around 22 45 N, 158 W)
0
BCO-DMO catalogue of parameters from Clone Metagenome Sequence data from R/V Ka'imikai-O-Kanaloa, R/V Kilo Moana multiple cruises near Hawaii (22.75 N, 158 W) from 2002-2009 (C-MORE project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/554531.rdf
Name: date
Units: YYYYMMDD
Description: <p>date</p>
http://lod.bco-dmo.org/id/dataset-parameter/554532.rdf
Name: cruise_id
Units: dimensionless
Description: <p>cruise ID</p>
http://lod.bco-dmo.org/id/dataset-parameter/554533.rdf
Name: sta_name
Units: dimensionless
Description: <p>station name</p>
http://lod.bco-dmo.org/id/dataset-parameter/554534.rdf
Name: lat
Units: decimal degrees
Description: <p>latitude (positive north)</p>
http://lod.bco-dmo.org/id/dataset-parameter/554535.rdf
Name: lon
Units: decimal degrees
Description: <p>longitude (positive east)</p>
http://lod.bco-dmo.org/id/dataset-parameter/554536.rdf
Name: BioProject
Units: dimensionless
Description: <p>NCBI BioProject accession number</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
638
https://datadocs.bco-dmo.org/file/GwwAkBjfOEMVvn/clone_meta_seq.csv
clone_meta_seq.csv
Primary data file for dataset ID 517567
download
https://osprey.bco-dmo.org/dataset/517567/data/download
download
onLine
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Cruise: KOK0220
KOK0220
R/V Ka`imikai-O-Kanaloa
Community Standard Description
International Council for the Exploration of the Sea
R/V Ka`imikai-O-Kanaloa
vessel
KOK0220
Daniel W. Sadler
University of Hawaiʻi at Mānoa
http://hahana.soest.hawaii.edu/hot/csreports/cs140.html
Report describing KOK0220
Cruise: KOK0916
KOK0916
R/V Ka`imikai-O-Kanaloa
Community Standard Description
International Council for the Exploration of the Sea
R/V Ka`imikai-O-Kanaloa
vessel
KOK0916
Susan E. Curless
University of Hawai'i
http://hahana.soest.hawaii.edu/hot/cruises.html
Report describing KOK0916
Cruise: KM0325
KM0325
R/V Kilo Moana
Community Standard Description
International Council for the Exploration of the Sea
R/V Kilo Moana
vessel
KM0325
Fernando Santiago-Mandujano
University of Hawai'i
Cruise: KM0627
KM0627
R/V Kilo Moana
Community Standard Description
International Council for the Exploration of the Sea
R/V Kilo Moana
vessel
KM0627
Eric M. Grabowski
University of Hawai'i
http://hahana.soest.hawaii.edu/hot/csreports/cs186.pdf
Report describing KM0627
Cruise: KM0608
KM0608
R/V Kilo Moana
Community Standard Description
International Council for the Exploration of the Sea
R/V Kilo Moana
vessel
KM0608
Fernando Santiago-Mandujano
University of Hawai'i
http://hahana.soest.hawaii.edu/hot/csreports/cs179.html
Report describing KM0608
R/V Ka`imikai-O-Kanaloa
Community Standard Description
International Council for the Exploration of the Sea
R/V Ka`imikai-O-Kanaloa
vessel
R/V Kilo Moana
Community Standard Description
International Council for the Exploration of the Sea
R/V Kilo Moana
vessel