http://lod.bco-dmo.org/id/dataset/518621
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2014-07-11
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Mass spec headers for Boron and Calcium geochemistry of mussel larvae bulk material, 2014-2015 (OA_Proxies project)
2015-07-08
publication
2015-07-08
revision
BCO-DMO Linked Data URI
2015-07-08
creation
http://lod.bco-dmo.org/id/dataset/518621
Achim D. Herrmann
Louisiana State University Coastal Studies Institute
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Herrmann, A. D. (2015) Mass spec headers for Boron and Calcium geochemistry of mussel larvae bulk material, 2014-2015 (OA_Proxies project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 2015-07-08) Version Date 2015-07-08 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/518621 [access date]
Mass spec headers for Boron and Calcium geochemistry of mussel larvae bulk material Dataset Description: <p>These data are the headers from the mass spectrometer runs of mussel larvae shells, conducted on 4 Jan. 2014 and 1 June 2015.</p> Methods and Sampling: <p>The concentrations of B and Ca in each mussel were analyzed using a laser ablation inductively coupled plasma mass spectrometer (LA-ICPMS; Cetac LSX-213; 213 nm laser coupled to an iCap Qc ICPMS) located in the Department of Geology and Geophysics at Louisiana State University. Boron isotopes of bulk mussel larvae and additional B/Ca ratios were measured in the Secondary Ion Mass Spectrometry Labs at Arizona State University using a Cameca IMS 3F.</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1401349 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1401349
completed
Achim D. Herrmann
Louisiana State University Coastal Studies Institute
225-578-3016
Department of Geology and Geophysics, Coastal Studies Institute E301/302 Howe-Russell Geoscience Complex
Baton Rouge
LA
70803
aherrmann@lsu.edu
pointOfContact
asNeeded
Dataset Version: 2015-07-08
Unknown
date
run
sample
time_start
meta
value
ICP Mass Spec
Mass Spec
theme
None, User defined
date
sample identification
time_start
No BCO-DMO term
featureType
BCO-DMO Standard Parameters
Inductively Coupled Plasma Mass Spectrometer
Mass Spectrometer
instrument
BCO-DMO Standard Instruments
Herrmann_lab
service
Deployment Activity
Louisiana State Univeristy lab
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Science, Engineering and Education for Sustainability NSF-Wide Investment (SEES): Ocean Acidification (formerly CRI-OA)
https://www.nsf.gov/funding/pgm_summ.jsp?pims_id=503477
Science, Engineering and Education for Sustainability NSF-Wide Investment (SEES): Ocean Acidification (formerly CRI-OA)
NSF Climate Research Investment (CRI) activities that were initiated in 2010 are now included under Science, Engineering and Education for Sustainability NSF-Wide Investment (SEES). SEES is a portfolio of activities that highlights NSF's unique role in helping society address the challenge(s) of achieving sustainability. Detailed information about the SEES program is available from NSF (https://www.nsf.gov/funding/pgm_summ.jsp?pims_id=504707).
In recognition of the need for basic research concerning the nature, extent and impact of ocean acidification on oceanic environments in the past, present and future, the goal of the SEES: OA program is to understand (a) the chemistry and physical chemistry of ocean acidification; (b) how ocean acidification interacts with processes at the organismal level; and (c) how the earth system history informs our understanding of the effects of ocean acidification on the present day and future ocean.
Solicitations issued under this program:
NSF 10-530, FY 2010-FY2011
NSF 12-500, FY 2012
NSF 12-600, FY 2013
NSF 13-586, FY 2014
NSF 13-586 was the final solicitation that will be released for this program.
PI Meetings:
1st U.S. Ocean Acidification PI Meeting(March 22-24, 2011, Woods Hole, MA)
2nd U.S. Ocean Acidification PI Meeting(Sept. 18-20, 2013, Washington, DC)
3rd U.S. Ocean Acidification PI Meeting (June 9-11, 2015, Woods Hole, MA – Tentative)
NSF media releases for the Ocean Acidification Program:
Press Release 10-186 NSF Awards Grants to Study Effects of Ocean Acidification
Discovery Blue Mussels "Hang On" Along Rocky Shores: For How Long?
Discovery nsf.gov - National Science Foundation (NSF) Discoveries - Trouble in Paradise: Ocean Acidification This Way Comes - US National Science Foundation (NSF)
Press Release 12-179 nsf.gov - National Science Foundation (NSF) News - Ocean Acidification: Finding New Answers Through National Science Foundation Research Grants - US National Science Foundation (NSF)
Press Release 13-102 World Oceans Month Brings Mixed News for Oysters
Press Release 13-108 nsf.gov - National Science Foundation (NSF) News - Natural Underwater Springs Show How Coral Reefs Respond to Ocean Acidification - US National Science Foundation (NSF)
Press Release 13-148 Ocean acidification: Making new discoveries through National Science Foundation research grants
Press Release 13-148 - Video nsf.gov - News - Video - NSF Ocean Sciences Division Director David Conover answers questions about ocean acidification. - US National Science Foundation (NSF)
Press Release 14-010 nsf.gov - National Science Foundation (NSF) News - Palau's coral reefs surprisingly resistant to ocean acidification - US National Science Foundation (NSF)
Press Release 14-116 nsf.gov - National Science Foundation (NSF) News - Ocean Acidification: NSF awards $11.4 million in new grants to study effects on marine ecosystems - US National Science Foundation (NSF)
SEES-OA
largerWorkCitation
program
Development of geochemical proxies to evaluate larval pH-exposure history
https://osprey.bco-dmo.org/project/2212
Development of geochemical proxies to evaluate larval pH-exposure history
<p>This research is funded as part of NSF CRI Ocean Acidification Category 2. The investigators will develop a new interdisciplinary partnership between connectivity ecology (Levin at SIO), metal isotope geochemistry (Anbar and Gordon at ASU), and paleoclimatology (Herrmann at ASU/LSU) to identify new proxies for ocean acidification that can be used to assess pH exposures in living organisms and, potentially to interpret the geologic record. The investigators hypothesize that the isotopic composition of larval calcium carbonates reflects changes in seawater chemistry driven by ocean acidification and, in some instances, with associated decline in oxygen levels. The large extent to which these two parameters vary in concert in the modern and past ocean (and thus have joint influence), and the extent to which they may be uncoupled by anthropogenic CO2 inputs, merits considerable attention. Thus, the integration of pH and oxygen in proxy development would be an important advance.</p>
<p>The focus of this project is on proxy development to determine pH exposure history for living organisms in their larval state, and will center on calcium, boron, and uranium isotopes as well as multi-elemental fingerprints. For this project, the investigators will target open coast, front bay and backbay mytilid mussel species, each living naturally under a different pH regime, and statoliths of encapsulated market squid larvae from the open shelf. Larvae with known pH, oxygen and temperature exposure histories will be obtained from (1) laboratory larval rearing experiments that manipulate pH and oxygen and (2) in situ out planting of lab-spawned larvae in larval homes onto existing moorings where pH, T and oxygen are being monitored. Analyses will employ SIMS (for del 11B), multicollector (for del 44Ca, del 238 U), and laser ablation ICP-MS (targeting B, Cu, U, Pb, Mo, and a suite of additional pH- and redox-sensitive trace elements). Multivariate statistical tools will define ability to detect pH-induced signatures and to determine species or taxon-specific vital effects. The investigators are exploring proxies for invertebrate larvae that are untested in the context of acidification geochemistry. Targeting larvae is critical as many marine organisms produce larval carbonate structures and these stages may be most affected by ocean acidification. The retention of larval shell and statoliths after recruitment may ultimately allow us to test the importance of larval pH and O2 exposure to survival and population persistence. An ability to assess past exposures through geochemical proxies will provide information about relative pH tolerances and ecosystem-level change in response to changes in the ocean's carbonate chemistry.</p>
<p><strong>NOTE</strong>: A series of laboratory experiments were run in which <em>Mytilus</em> spp. larvae (<em>Mytilus californianus</em> and <em>Mytilus galloprovincialis</em>) and <em>Doryteuthis opalescens</em> (market squid) embryos were reared under controlled temperature, pH and oxygen conditions. Experimental conditions are given in <a href="http://bcodata.whoi.edu/OA_Proxy_Development/BCO-DMO_Table1_Experimental_Seawater_Conditions_Mussels_v2_2014-08-27.jpg" target="_blank">Table 1</a> (for mussel larvae) and <a href="http://bcodata.whoi.edu/OA_Proxy_Development/Table2_Levin_OCE1041062.pdf" target="_blank">Table 2</a> (for squid embryos). Geochemistry data in the form of Metal:Ca ratios for mussels has been uploaded to BCO-DMO as "Mussel shell trace element ratios" and squid statolith geochemistry data are available on request.</p>
OA_Proxies
largerWorkCitation
project
eng; USA
biota
oceans
Louisiana State Univeristy lab
2015-07-08
Southern California, 32 N 117 W
0
BCO-DMO catalogue of parameters from Mass spec headers for Boron and Calcium geochemistry of mussel larvae bulk material, 2014-2015 (OA_Proxies project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/562229.rdf
Name: date
Units: yyyymmdd
Description: <p>date of analysis</p>
http://lod.bco-dmo.org/id/dataset-parameter/562230.rdf
Name: run
Units: unitless
Description: <p>mass spec run id</p>
http://lod.bco-dmo.org/id/dataset-parameter/562231.rdf
Name: sample
Units: unitless
Description: <p>sample identification</p>
http://lod.bco-dmo.org/id/dataset-parameter/562232.rdf
Name: time_start
Units: HH:MM:SS
Description: <p>time at start of mass spec run</p>
http://lod.bco-dmo.org/id/dataset-parameter/562233.rdf
Name: meta
Units: unitless
Description: <p>mass spectrometer parameter</p>
http://lod.bco-dmo.org/id/dataset-parameter/562234.rdf
Name: value
Units: various
Description: <p>value of parameter</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
710440
https://datadocs.bco-dmo.org/file/P66GwOncomvNx/mass_spec_headers.csv
mass_spec_headers.csv
Primary data file for dataset ID 518621
download
58661
https://datadocs.bco-dmo.org/docs/302/herrmann/data_docs/Hermann_SIMS_data_3July2014.pdf
SIMS results table: Secondary Ion Mass Spectrometry
download
https://osprey.bco-dmo.org/dataset/518621/data/download
download
onLine
dataset
<p>The concentrations of B and Ca in each mussel were analyzed using a laser ablation inductively coupled plasma mass spectrometer (LA-ICPMS; Cetac LSX-213; 213 nm laser coupled to an iCap Qc ICPMS) located in the Department of Geology and Geophysics at Louisiana State University. Boron isotopes of bulk mussel larvae and additional B/Ca ratios were measured in the Secondary Ion Mass Spectrometry Labs at Arizona State University using a Cameca IMS 3F.</p>
Specified by the Principal Investigator(s)
<p>LA-ICPMS data can be evaluated using Iolite. SIMS data was evaluated using an instrument fractionation factor as established from Bahamian carbonates.</p>
<p><strong>BCO-DMO Data Processing:</strong><br />
In order to serve on the BCO-DMO system, these changes were made to the&nbsp;originally submitted files:<br />
- headers were split off from data<br />
- separated each pair of meta/value into single record<br />
- sorted files by time_start<br />
- added columns for date, run, sample, time_start, meta, and value</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
ICP Mass Spec
ICP Mass Spec
PI Supplied Instrument Name: ICP Mass Spec PI Supplied Instrument Description:LA-ICPMS; Cetac LSX-213; 213 nm laser coupled to an iCap Qc ICPMS located in the Department of Geology and Geophysics at Louisiana State University. Instrument Name: Inductively Coupled Plasma Mass Spectrometer Instrument Short Name:ICP Mass Spec Instrument Description: An ICP Mass Spec is an instrument that passes nebulized samples into an inductively-coupled gas plasma (8-10000 K) where they are atomized and ionized. Ions of specific mass-to-charge ratios are quantified in a quadrupole mass spectrometer. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/LAB15/
Mass Spec
Mass Spec
PI Supplied Instrument Name: Mass Spec PI Supplied Instrument Description:Cameca IMS 3F located at the Secondary Ion Mass Spectrometry Labs at Arizona State University Instrument Name: Mass Spectrometer Instrument Short Name:Mass Spec Instrument Description: General term for instruments used to measure the mass-to-charge ratio of ions; generally used to find the composition of a sample by generating a mass spectrum representing the masses of sample components. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/LAB16/
Deployment: Herrmann_lab
Herrmann_lab
lab LSU
laboratory
lab LSU
laboratory