http://lod.bco-dmo.org/id/dataset/527777
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2014-09-09
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Control point navigation from Rolling Deck to Repository (R2R) from R/V Roger Revelle cruise RR1211 in the Northeast Lau Basin in 2012 (Vent Mn-Fe Microbes project)
2014-09-09
publication
2014-09-09
revision
BCO-DMO Linked Data URI
2014-09-09
creation
http://lod.bco-dmo.org/id/dataset/527777
Joseph A. Resing
University of Washington
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Resing, J. A. (2014) Control point navigation from Rolling Deck to Repository (R2R) from R/V Roger Revelle cruise RR1211 in the Northeast Lau Basin in 2012 (Vent Mn-Fe Microbes project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 09 Sept 2014) Version Date 2014-09-09 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/527777 [access date]
Control point navigation from Rolling Deck to Repository (R2R) for cruise RR1211 Dataset Description: <p>Control point navigation from Rolling Deck to Repository (R2R) for the RR1211 cruise (also called "SRoF-12").</p> Methods and Sampling:
onGoing
Joseph A. Resing
University of Washington
206-526-6184
Joint Institute for the Study of the Atmosphere and the Ocean, PMEL/NOAA 7600 Sand Point Way NE, Building #3
Seattle
WA
98115
USA
Resing@uw.edu
pointOfContact
asNeeded
Dataset Version: 09 Sept 2014
Unknown
ISO_DateTime_UTC
lat
lon
theme
None, User defined
ISO_DateTime_UTC
latitude
longitude
featureType
BCO-DMO Standard Parameters
RR1211
service
Deployment Activity
Northeast Lau Basin
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Understanding microbial manganese-oxidizing communities and physiological mechanisms in metal oxide-rich hydrothermal sediments using a metagenomic and metatranscriptomic approach
https://osprey.bco-dmo.org/project/527494
Understanding microbial manganese-oxidizing communities and physiological mechanisms in metal oxide-rich hydrothermal sediments using a metagenomic and metatranscriptomic approach
<p><em>Project description from the NSF award abstract:</em><br />
Hydrothermal systems are important sources of dissolved Mn to the oceans. Upon oxidation of Mn(II), Mn(III,IV) oxides are deposited at the sea floor as crusts, nodules and sediments both near and far from the sources. Microbial activity has long been recognized as being important to the fate of Mn in these hydrothermal systems, yet we know very little about the organisms that catalyze Mn oxidation, the mechanisms by which Mn is oxidized or the physiological function that Mn oxidation serves. The overarching goals of this project are to reveal the organisms and mechanism(s) underlying Mn(II) oxidation, to evaluate whether hydrothermal Mn oxidizers may obtain energy from Mn oxidation, and test whether thermophilic Mn oxidizers exist. Specifically, the project will: 1) evaluate whether we can identify certain genomic sequences that correlate to the presence/concentration of Mn oxides (and hence Mn(II)- oxidizing bacteria) by comparing the metagenomes of ferromanganese (containing both Mn and Fe oxides) microbial mats with ferruginous (Fe oxide only) mats from Lau Basin and Loihi Seamount; 2) use peptide probes bound to magnetic particles for selectively binding and capturing Mn oxide particles and characterizing the particles using phylogenetic and functional gene (PCR and FISH) and transcriptomic analysis; 3) assess the main pathways of carbon fixation in ferromanganese microbial mats as compared to ferruginous mats as a possible indicator of Mn-based auto/mixotrophy using genomic approaches and substrate stimulated (e.g., addition of Mn(II)) CO2 fixation measurements and stable isotope probing (SIP) genomic analysis; and 4) isolate and characterize Mn(II)-oxidizing bacteria and determine whether thermophilic Mn oxidizers exist.</p>
<p>The results of this research will increase our understanding of Mn(II) oxidation in hydrothermal sediments, identify microorganisms that are the environmentally relevant Mn oxidizers and begin to address the long standing question of whether Mn auto/mixotrophy exists using approaches not based on the biases associated with cultivation. Ultimately this information is critical to our understanding of biogeochemical cycles (Mn oxidation and Mn oxides impact many other elemental cycles, including carbon, sulfur, and heavy metals) and the natural attenuation of toxic metal and organic compounds; this may lead to improved technologies for environmental remediation. Because Mn oxides are believed to be an analog to the ancestral Mn centers in photosystem II, this research may also lend new insights into ancient biogeochemistry occurring before the Great Oxidation Event.</p>
Vent Mn-Fe Microbes
largerWorkCitation
project
eng; USA
oceans
Northeast Lau Basin
2014-09-09
Northeast Lau Basin
0
BCO-DMO catalogue of parameters from Control point navigation from Rolling Deck to Repository (R2R) from R/V Roger Revelle cruise RR1211 in the Northeast Lau Basin in 2012 (Vent Mn-Fe Microbes project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/527790.rdf
Name: ISO_DateTime_UTC
Units: YYYY-mm-ddTHH:MM:SSZ
Description: <p>Date and time formatted to ISO 8601 standard (UTC).</p>
http://lod.bco-dmo.org/id/dataset-parameter/527792.rdf
Name: lat
Units: decimal degrees
Description: <p>Latitude.</p>
http://lod.bco-dmo.org/id/dataset-parameter/527795.rdf
Name: lon
Units: decimal degrees
Description: <p>Longitude.</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
6529
https://datadocs.bco-dmo.org/file/JEE1n4WiQAzNJK/control_pt_nav.csv
control_pt_nav.csv
Primary data file for dataset ID 527777
download
https://osprey.bco-dmo.org/dataset/527777/data/download
download
onLine
dataset
<p>BCO-DMO obtained the control point navigation from R2R on 09 September 2014. Original data available from: <a href="http://www.rvdata.us/catalog/RR1211" target="_blank">http://www.rvdata.us/catalog/RR1211</a></p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Cruise: RR1211
RR1211
R/V Roger Revelle
Community Standard Description
International Council for the Exploration of the Sea
R/V Roger Revelle
vessel
RR1211
Joseph A. Resing
University of Washington
http://dmoserv3.whoi.edu/data_docs/Vent_Mn-Fe_Microbes/SRoF12-cruisereport-final.pdf
Report describing RR1211
R/V Roger Revelle
Community Standard Description
International Council for the Exploration of the Sea
R/V Roger Revelle
vessel