http://lod.bco-dmo.org/id/dataset/535266
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2014-10-14
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Respiration of brooded coral larvae at high and ambient temperature and pCO2, Taiwan, March 2011 (Cumbo et al, JEMBE, 2013) (MCR LTER & Climate Coral Larvae projects)
2014-10-07
publication
2014-10-07
revision
BCO-DMO Linked Data URI
2014-10-07
creation
http://lod.bco-dmo.org/id/dataset/535266
Peter J. Edmunds
California State University Northridge
principalInvestigator
Dr Vivian R Cumbo
California State University Northridge
principalInvestigator
Tung-Yung Fan
National Museum of Marine Biology and Aquarium
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Edmunds, P. J., Fan, T., Cumbo, V. R. (2014) Respiration of brooded coral larvae at high and ambient temperature and pCO2, Taiwan, March 2011 (Cumbo et al, JEMBE, 2013) (MCR LTER & Climate Coral Larvae projects). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2014-10-07 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/535266 [access date]
Respiration of brooded coral larvae at high and ambient temperature and pCO2, March 2011 (Cumbo et al, JEMBE, 2013) Dataset Description: Methods and Sampling: <p>Larval respiration was measured in a confined respirometer use a Ruthenium-based optrode (FOXY-R, 1.58 diameter, Ocean Optics) connected to a spectrophotometer (USB2000, Ocean Optics) and interfaced with a computer running the manufacturers software (OOISensor, version 1.00.08). The optrode was calibrated using a zero solution (0.01 M Na2B4O7·10H2O supersaturated with Na2SO3) and 100% air saturation usingwater-saturated air at the treatment temperature. Tomeasure respiration, 6 larvae were removed from the tubs in the treatment tanks and placed into 2-mL glass Wheaton vials filled with filtered seawater from the same treatment tank and sealed with Parafilm. A study conducted concurrently with the present analysis demonstrated that respiration of <em>P. damicornis</em> larvae in identical vials could be measured accurately with 5 larvae vial-1 (Edmunds et al., 2011).</p>
<p>Initial O2 concentration in the seawater was determined before the vials were sealed, and vials without larvae used as controls. Larvae in the sealed vials were incubated at their temperature treatments for 1.5-2 h in the dark using water baths set to the temperature of the respective treatments (±0.1 °C, Hipoint, models LC-06 and LC-10); vials were carefully moved throughout the incubations to ensure the seawater remained mixed. Incubation timeswere selected to ensure O2 concentrations remained &gt;75% saturation. On completion of the incubations, vials were removed from the water baths, gently inverted to mix the seawater, and analyzed for O2 saturation. O2 saturation was converted to concentration using tabulated values of O2 solubility (N. Ramsing and J. Gundersen at http://www.unisense.com [based on Garcia and Gordon, 1992]) and the temperature and salinity of the seawater, and the change in O2 concentration used to calculate O2 flux after adjusting for controls. The respiration rates are expressed as nmol O2 mg protein-1 min-1.</p>
<p>The 'ambient' and 'high' pCO2 levels:&nbsp;49.4 Pa versus 86.2 Pa<br />
The 'ambient' and 'high' temperatures: 24.00 °C [ambient] versus 30.49 °C</p>
<p>Data also available from PANGAEA:&nbsp;<a href="http://doi.pangaea.de/10.1594/PANGAEA.823582" target="_blank">doi:10.1594/PANGAEA.823582</a></p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-0844785 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=0844785
completed
Peter J. Edmunds
California State University Northridge
818-677-2502
Department of Biology 18111 Nordhoff Street
Northridge
CA
91330-8303
USA
peter.edmunds@csun.edu
pointOfContact
Dr Vivian R Cumbo
California State University Northridge
Dept. of Biology 18111 Nordhoff Street
Northridge,
CA
91330-8303
pointOfContact
Tung-Yung Fan
National Museum of Marine Biology and Aquarium
08-8825001 X2109
2 Houwan Road Checheng
Pingtung
Taiwan
944
Republic of China
tyfan@nmmba.gov.tw
pointOfContact
asNeeded
Dataset Version: 1
Unknown
lab
lat
lon
date
treatment
sample
tank
temp
treatment_pCO2
days
num_larvae
species
vol_chamber
time_inc
O2_sat_pcent_start
O2_sat_pcent_final
resp_chamber
resp_larv
resp_control
comment
Aquarium chiller
Gas Analyzer
Immersion heater
LI-COR LI-192 light sensor
optrode
spectrophotometer
Water Temp Sensor
theme
None, User defined
laboratory
latitude
longitude
date
treatment
sample identification
tank
water temperature at measurement depth
days
count
species scientific name (binomial)
sample_volume
incubation time or duration
Dissolved oxygen (percent)
oxygen respiration rates from in situ incubation
comments
featureType
BCO-DMO Standard Parameters
Aquarium chiller
Gas Analyzer
Immersion heater
LI-COR LI-192 PAR Sensor
Optode
Spectrophotometer
Water Temperature Sensor
instrument
BCO-DMO Standard Instruments
lab_Edmunds_NMMBA
service
Deployment Activity
National Museum of Marine Biology and Aquarium, Taiwan
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Long Term Ecological Research network
http://www.lternet.edu/
Long Term Ecological Research network
adapted from http://www.lternet.edu/
The National Science Foundation established the LTER program in 1980 to support research on long-term ecological phenomena in the United States. The Long Term Ecological Research (LTER) Network is a collaborative effort involving more than 1800 scientists and students investigating ecological processes over long temporal and broad spatial scales. The LTER Network promotes synthesis and comparative research across sites and ecosystems and among other related national and international research programs. The LTER research sites represent diverse ecosystems with emphasis on different research themes, and cross-site communication, network publications, and research-planning activities are coordinated through the LTER Network Office.
2017 LTER research site map obtained from https://lternet.edu/site/lter-network/
LTER
largerWorkCitation
program
Moorea Coral Reef Long-Term Ecological Research site
http://mcr.lternet.edu/
Moorea Coral Reef Long-Term Ecological Research site
<p><strong>NSF Award Abstract: </strong></p>
<p>Coral reefs provide important benefits to society, from food to exceptional biodiversity to shoreline protection and recreation, but they are threatened by natural perturbations and human activities, including those causing global-scale changes. These pressures increasingly are causing coral reefs to undergo large, often abrupt, ecological changes where corals are being replaced by seaweeds or other undesirable organisms. Historically, the major agent of disturbance to coral reefs has been powerful storms, but in recent decades, episodes of mass coral bleaching from marine heat waves have become more frequent and severe as the temperature of ocean surface waters continues to rise. Coral reefs are further stressed by local human activities that cause nutrient pollution and deplete herbivorous fishes that control growth of seaweeds. Studying how coral reefs respond to these two types of disturbance under different levels of nutrient pollution and fishing provides essential information on what affects the ability of coral reefs to buffer environmental change and disturbances without collapsing to a persistent, degraded condition. The fundamental goals of the Moorea Coral Reef Long Term Ecological Research program (MCR LTER) are to understand how and why coral reefs change over time, to assess the consequences of these changes, and to contribute scientific knowledge needed to sustain coral reef ecosystems and the important societal services they provide. This research improves understanding and management of coral reefs, which benefits all groups concerned with the welfare of this ecologically, economically and culturally important ecosystem. In addition to academic communities, scientific findings are communicated to interested individuals, non-governmental organizations, island communities and governmental entities. These findings also are integrated into K-12, undergraduate, graduate and public education activities through a multi-pronged program that includes inquiry-based curricula, interactive and media-based public education programs, and internet-based resources. MCR?s research, training, education and outreach efforts all emphasize broadening participation in STEM fields and strengthening STEM literacy.</p>
<p>New research activities build on MCR LTER?s powerful foundation of long-term observations and broad ecological understanding of oceanic coral reefs to address the following core issues: How is the changing disturbance regime (recurrent heat waves in addition to cyclonic storms) altering the resilience of coral reefs, and what are the ecological consequences of altered resilience? Research activities are organized around a unifying framework that explicitly addresses how reef communities are affected by the nature and history of coral-killing disturbances, and how those responses to disturbance are influenced by the pattern of local human stressors. New studies answer three focal questions: (1) How do different disturbance types, which either remove (storms) or retain (heat waves) dead coral skeletons, affect community dynamics, abrupt changes in ecological state, and resilience? (2) How do local stressors interact with new disturbance regimes to create spatial heterogeneity in community dynamics, ecosystem processes, and spatial resilience? And (3) What attributes of coral and coral reef communities influence their capacity to remain resilient under current and future environmental conditions? These questions provide an unparalleled opportunity to test hypotheses and advance theory regarding ecological resilience and the causes and consequences of abrupt ecological change, which is broadly relevant across aquatic and terrestrial ecosystems.</p>
<p>This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.</p>
<p><strong>From <a href="http://www.lternet.edu/sites/mcr/">http://www.lternet.edu/sites/mcr/</a> and <a href="http://mcr.lternet.edu/">http://mcr.lternet.edu/</a></strong>:<br />
The Moorea Coral Reef LTER site encompasses the coral reef complex that surrounds the island of Moorea, French Polynesia (17°30'S, 149°50'W). Moorea is a small, triangular volcanic island 20 km west of Tahiti in the Society Islands of French Polynesia. An offshore barrier reef forms a system of shallow (mean depth ~ 5-7 m), narrow (~0.8-1.5 km wide) lagoons around the 60 km perimeter of Moorea. All major coral reef types (e.g., fringing reef, lagoon patch reefs, back reef, barrier reef and fore reef) are present and accessible by small boat.</p>
<p>The MCR LTER was established in 2004 by the US National Science Foundation (NSF) and is a partnership between the University of California Santa Barbara and California State University, Northridge. MCR researchers include marine scientists from the UC Santa Barbara, CSU Northridge, UC Davis, UC Santa Cruz, UC San Diego, CSU San Marcos, Duke University and the University of Hawaii. Field operations are conducted from the UC Berkeley Richard B. Gump South Pacific Research Station on the island of Moorea, French Polynesia.</p>
<p><strong>MCR LTER Data:</strong> The Moorea Coral Reef (MCR) LTER data are managed by and available directly from the MCR project data site URL shown above. The datasets listed below were collected at or near the MCR LTER sampling locations, and funded by NSF OCE as ancillary projects related to the MCR LTER core research themes.</p>
<p><strong>This project is supported by continuing grants with slight name variations:</strong></p>
<ul>
<li>LTER: Long-Term Dynamics of a Coral Reef Ecosystem</li>
<li>LTER: MCR II - Long-Term Dynamics of a Coral Reef Ecosystem</li>
<li>LTER: MCR IIB: Long-Term Dynamics of a Coral Reef Ecosystem</li>
<li>LTER: MCR III: Long-Term Dynamics of a Coral Reef Ecosystem</li>
<li>LTER: MCR IV: Long-Term Dynamics of a Coral Reef Ecosystem</li>
</ul>
MCR LTER
largerWorkCitation
project
The ecophysiological basis of the response of coral larvae and early life history stages to global climate change
https://osprey.bco-dmo.org/project/2235
The ecophysiological basis of the response of coral larvae and early life history stages to global climate change
<p><span style="font-size:13px">Tropical coral reefs face a suite of environmental assaults ranging from anchor damage to the effects of global climate change (GCC). The consequences are evident throughout the tropics, where many coral reefs have lost a substantial fraction of their coral cover in a few decades. Notwithstanding the importance of reducing the impacts of environmental stresses, the only means by which these ecosystems can recover (or simply persist) is through the recruitment of scleractinians, which is a function of successful larval development, delivery, settlement, metamorphosis, and post-settlement events. Despite wide recognition of the importance of these processes, there are few pertinent empirical data, and virtually none that address the mechanisms mediating the success of early coral life stages in a physical environmental varying at multiple spatio-temporal scales.</span></p>
<p>The objective of this research is to complete one of the first comprehensive ecophysiological analyses of the early life stages of corals through a description of: (1) their functionality under 'normal' conditions, and (2) their response to the main drivers of GCC. These analyses will be completed for 2 species representative of a brooding life history strategy, and the experiments will be completed in two locations, one (Taiwan) that provides unrivalled experience in coral reproductive biology, and superb microcosm facilities, and the other (Moorea), with access to a relatively pristine environment, a well described ecological and oceanographic context (through the MCR-LTER), and the capacity to bring a strong biogeographic contrast to the project. The results of the study will be integrated through modeling to explore the effects of GCC on coral community structure over the next century.</p>
<p><strong>The following publications and data resulted from this project:</strong></p>
<p>2013 Wall CB, Fan TY, Edmunds PJ. Ocean acidification has no effect on thermal bleaching in the coral <em>Seriatopora caliendrum</em>. Coral Reefs 33: 119-130.<br />
<a href="http://www.bco-dmo.org/dataset/522591" target="_blank">Symbiodinium_Seriatopora photosynthesis</a><br />
<a href="http://www.bco-dmo.org/dataset/522737" target="_blank">Symbiodinium_Seriatopora PI curve</a><br />
<a href="http://www.bco-dmo.org/dataset/522697" target="_blank">Symbiodinium_Seriatopora temp-salinity-light</a><br />
<a href="http://www.bco-dmo.org/dataset/522631" target="_blank">Symbiodinium_Seriatopora water chemistry</a><br />
<a href="http://dmoserv3.whoi.edu/data_docs/Climate_Coral_Larvae/Wall_Fan_Edmunds_for_Taiwan_Bleaching_data2013_BCODMO.xlsx" target="_blank">- Download complete data for this publication (Excel file)</a></p>
<p>2013 Wall CB, Edmunds PJ. <em>In situ </em>effects of low pH and elevated HCO3- on juvenile <em>Porites</em> spp. in Moorea, French Polynesia. Biological Bulletin 225:92-101.<br />
Data at <a href="http://mcr.lternet.edu/" target="_blank">MCR</a> and PANGEA: <a href="http://doi.pangaea.de/10.1594/PANGAEA.833913" target="_blank">doi.pangaea.de/10.1594/PANGAEA.833913</a><br />
<a href="http://dmoserv3.whoi.edu/data_docs/Climate_Coral_Larvae/Wall_Edmunds_2013_BioBull_BCODMO.xlsx" target="_blank">- Download complete data for this publication (Excel file)</a></p>
<p>2013 Vivian R Cumbo, Peter J Edmunds, Christopher B Wall, Tung-Yung Fan. Brooded coral larvae differ in their response to high temperature and elevated pCO2 depending on the day of release. Marine Biology DOI 10.1007/s00227-013-2280-y.<br />
Data also at PANGEA: <a href="http://doi.pangaea.de/10.1594/PANGAEA.831612" target="_blank">doi.pangaea.de/10.1594/PANGAEA.831612</a><br />
<a href="http://www.bco-dmo.org/dataset/528806">brooded coral larvae 2 - carbonate chemistry</a><br />
<a href="http://www.bco-dmo.org/dataset/528880">brooded coral larvae 2 - larval release March 2003-2008</a><br />
<a href="http://www.bco-dmo.org/dataset/528834">brooded coral larvae 2 - respiration_photosyth_mortality</a><br />
<a href="http://dmoserv3.whoi.edu/data_docs/Climate_Coral_Larvae/Cumbo_etal_2013_MarBio_BCODMO.xlsx" target="_blank">- Download complete data for this publication (Excel file)</a></p>
<p>2013 Edmunds PJ, Cumbo VR, Fan TY. Metabolic costs of larval settlement and metamorphosis in the coral <em>Seriatopora caliendrum</em> under ambient and elevated pCO2. Journal Experimental Marine Biology and Ecology 443: 33-38 Data also at PANGEA: <a href="http://doi.pangaea.de/10.1594/PANGAEA.821644" target="_blank">doi:10.1594/PANGAEA.821644</a><br />
<a href="http://www.bco-dmo.org/dataset/526674" target="_blank">Coral post-settlement physiology</a><br />
<a href="http://dmoserv3.whoi.edu/data_docs/Climate_Coral_Larvae/Edmunds_etal_2013_JEMBE443_BCODMO.xls" target="_blank">- Download complete data for this publication (Excel file)</a></p>
<p>2013 Aaron M Dufault, Aaron Ninokawa, Lorenzo Bramanti, Vivian R Cumbo, Tung-Yung Fan, Peter J Edmunds. The role of light in mediating the effects of ocean acidification on coral calcification. Journal of Experimental Biology 216: 1570-1577.<br />
<a href="http://www.bco-dmo.org/dataset/527500">coral-light expt.- PAR</a><br />
<a href="http://www.bco-dmo.org/dataset/527752">coral-light expt.- carbonate chemistry</a><br />
<a href="http://www.bco-dmo.org/dataset/527729">coral-light expt.- temp_salinity</a><br />
<a href="http://www.bco-dmo.org/dataset/527816">coral-light expt.- growth</a><br />
<a href="http://www.bco-dmo.org/dataset/527782">coral-light expt.- protein</a><br />
<a href="http://www.bco-dmo.org/dataset/527851">coral-light expt.- survival</a><br />
<a href="http://dmoserv3.whoi.edu/data_docs/Climate_Coral_Larvae/Dufault_etal_2013_JEB_BCODMO.xlsx" target="_blank">- Download complete data for this publication (Excel file)</a></p>
<p>2012 Cumbo, VR, Fan TY, Edmunds PJ. Effects of exposure duration on the response of <em>Pocillopora damicornis</em> larvae to elevated temperature and high pCO2. J Exp Mar Biol Ecol 439: 100-107.<br />
Data is also at PANGEA: <a href="http://doi.pangaea.de/10.1594/PANGAEA.823582" target="_blank">doi:10.1594/PANGAEA.823582</a><br />
<a href="http://www.bco-dmo.org/dataset/535163">brooded coral larvae 3 - carbonate chemistry</a><br />
<a href="http://www.bco-dmo.org/dataset/535219">brooded coral larvae 3 - light</a><br />
<a href="http://www.bco-dmo.org/dataset/535462">brooded coral larvae 3 - mortality</a><br />
<a href="http://www.bco-dmo.org/dataset/535425">brooded coral larvae 3 - protein</a><br />
<a href="http://www.bco-dmo.org/dataset/535328">brooded coral larvae 3 - respiration and protein</a><br />
<a href="http://www.bco-dmo.org/dataset/535266">brooded coral larvae 3 - respiration raw data</a><br />
<a href="http://www.bco-dmo.org/dataset/535358">brooded coral larvae 3 - symbiont density</a><br />
<a href="http://www.bco-dmo.org/dataset/535244">brooded coral larvae 3 - tank temperature</a><br />
<a href="http://dmoserv3.whoi.edu/data_docs/Climate_Coral_Larvae/Cumbo_etal_2012_JEMBE_data1_BCODMO.xls" target="_blank">- Download part 1 of data for this publication (Excel file)</a><br />
<a href="http://dmoserv3.whoi.edu/data_docs/Climate_Coral_Larvae/Cumbo_etal_2012_JEMBE_Tank Parameters_BCODMO.xlsx" target="_blank">- Download tank parameters data for this publication (Excel file)</a></p>
<p>2012 Cumbo, VR, Fan TY, Edmunds PJ. Physiological development of brooded larvae from two pocilloporid corals in Taiwan. Marine Biology 159: 2853-2866.<br />
<a href="http://www.bco-dmo.org/dataset/528781">brooded coral - carbonate chemistry</a><br />
<a href="http://www.bco-dmo.org/dataset/528641">brooded coral - release</a><br />
<a href="http://www.bco-dmo.org/dataset/528695">brooded coral - respiration</a><br />
<a href="http://www.bco-dmo.org/dataset/528728">brooded coral - settlement competency</a><br />
<a href="http://www.bco-dmo.org/dataset/528761">brooded coral - size_July</a><br />
<a href="http://www.bco-dmo.org/dataset/528661">brooded coral - size_protein_symbionts_photosynth</a><br />
<a href="http://dmoserv3.whoi.edu/data_docs/Climate_Coral_Larvae/Cumbo_etal_2012_MarBio_BCODMO .xlsx" target="_blank">- Download complete data for this publication (Excel file)</a></p>
<p>2012 Dufault, Aaron M; Vivian R Cumbo; Tung-Yung Fan; Peter J Edmunds. Effects of diurnally oscillating pCO2 on the calcification and survival of coral recruits. Royal Society of London (B) 279: 2951-2958. doi:10.1098/rspb.2011.2545<br />
Data is also at PANGEA: <a href="http://doi.pangaea.de/10.1594/PANGAEA.830185" target="_blank">doi:10.1594/PANGAEA.830185</a><br />
<a href="http://www.bco-dmo.org/dataset/514198" target="_blank">recruit_growth_area</a><br />
<a href="http://www.bco-dmo.org/dataset/506245" target="_blank">recruit_growth_weight</a><br />
<a href="http://www.bco-dmo.org/dataset/516783" target="_blank">recruit_seawater_chemistry</a><br />
<a href="http://www.bco-dmo.org/dataset/516529" target="_blank">recruit_survival</a><br />
<a href="http://dmoserv3.whoi.edu/data_docs/Climate_Coral_Larvae/Dufault_etal_2012_RoyProcB_BCODMO.xlsx" target="_blank">- Download complete data for this publication (Excel file)</a></p>
<p>2011 Edmunds PJ, Cumbo V, Fan TY. Effects of temperature on the respiration of brooded larvae from tropical reef corals. Journal of Experimental Biology 214: 2783-2790. <br />
<a href="http://www.bco-dmo.org/dataset/3790" target="_blank">CoralLarvae_comparison_respir</a><br />
<a href="http://www.bco-dmo.org/dataset/3809" target="_blank">CoralLarvae_release</a><br />
<a href="http://www.bco-dmo.org/dataset/3802" target="_blank">CoralLarvae_respir</a><br />
<a href="http://www.bco-dmo.org/dataset/3795" target="_blank">CoralLarvae_size</a><br />
<a href="http://dmoserv3.whoi.edu/data_docs/Climate_Coral_Larvae/Edmunds_etal_2011_JEB_BCODMO.xls" target="_blank">- Download complete data for this publication (Excel file)</a></p>
Climate_Coral_Larvae
largerWorkCitation
project
eng; USA
biota
oceans
National Museum of Marine Biology and Aquarium, Taiwan
120.74602
120.74602
21.93817
21.93817
2011-03-02
2011-03-18
From projects that focused on the following 2 locations: 1. Island of Moorea, French Polynesia 2. Moorea, French Polynesia; Southern Taiwan; California State University Northridge
0
BCO-DMO catalogue of parameters from Respiration of brooded coral larvae at high and ambient temperature and pCO2, Taiwan, March 2011 (Cumbo et al, JEMBE, 2013) (MCR LTER & Climate Coral Larvae projects)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/535285.rdf
Name: lab
Units: unitless
Description: <p>laboratory</p>
http://lod.bco-dmo.org/id/dataset-parameter/535286.rdf
Name: lat
Units: decimal degrees
Description: <p>latitude; north is positive</p>
http://lod.bco-dmo.org/id/dataset-parameter/535287.rdf
Name: lon
Units: decimal degrees
Description: <p>longitude; east is positive</p>
http://lod.bco-dmo.org/id/dataset-parameter/535288.rdf
Name: date
Units: yyyy-mm-dd
Description: <p>local date</p>
http://lod.bco-dmo.org/id/dataset-parameter/535289.rdf
Name: treatment
Units: unitless
Description: <p>with or without larvae</p>
http://lod.bco-dmo.org/id/dataset-parameter/535290.rdf
Name: sample
Units: unitless
Description: <p>sample identification</p>
http://lod.bco-dmo.org/id/dataset-parameter/535291.rdf
Name: tank
Units: tank
Description: <p>tank id number</p>
http://lod.bco-dmo.org/id/dataset-parameter/535292.rdf
Name: temp
Units: degrees Celsius
Description: <p>target temperature</p>
http://lod.bco-dmo.org/id/dataset-parameter/535293.rdf
Name: treatment_pCO2
Units: unitless
Description: <p>pCO2 treatment: ambient (47.5 - 49.3 Pa) or high (85.2 - 87.2 Pa)</p>
http://lod.bco-dmo.org/id/dataset-parameter/535294.rdf
Name: days
Units: unitless
Description: <p>days since start of experiment</p>
http://lod.bco-dmo.org/id/dataset-parameter/535295.rdf
Name: num_larvae
Units: integer
Description: <p>number of larvae in respiration chamber</p>
http://lod.bco-dmo.org/id/dataset-parameter/535296.rdf
Name: species
Units: unitless
Description: <p>coral species name</p>
http://lod.bco-dmo.org/id/dataset-parameter/535297.rdf
Name: vol_chamber
Units: ml
Description: <p>the volume in which the cells were resuspended prior to counting</p>
http://lod.bco-dmo.org/id/dataset-parameter/535298.rdf
Name: time_inc
Units: minutes
Description: <p>length of incubation</p>
http://lod.bco-dmo.org/id/dataset-parameter/535299.rdf
Name: O2_sat_pcent_start
Units: percent
Description: <p>oxygen saturation relative to air at start of incubation</p>
http://lod.bco-dmo.org/id/dataset-parameter/535300.rdf
Name: O2_sat_pcent_final
Units: percent
Description: <p>oxygen saturation relative to air at end of incubation</p>
http://lod.bco-dmo.org/id/dataset-parameter/535301.rdf
Name: resp_chamber
Units: umol O2/chamber/hr
Description: <p>respiration rate (6 larvae/chamber)</p>
http://lod.bco-dmo.org/id/dataset-parameter/535302.rdf
Name: resp_larv
Units: nmol O2/larva/min
Description: <p>respiration rate per larva</p>
http://lod.bco-dmo.org/id/dataset-parameter/535303.rdf
Name: resp_control
Units: micromol O2/chamber/hour
Description: <p>average respiration rate of the 4 control vials</p>
http://lod.bco-dmo.org/id/dataset-parameter/535304.rdf
Name: comment
Units: unitless
Description: <p>comments</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
12647
https://datadocs.bco-dmo.org/file/yppz4qGTLN2GZp/brood3_respraw.csv
brood3_respraw.csv
Primary data file for dataset ID 535266
download
158208
https://datadocs.bco-dmo.org/docs/302/Climate_Coral_Larvae/data_docs/Cumbo_etal_2012_JEMBE_data1_BCODMO.xls
Biological data for "brooded coral larvae expt. 3" datasets
Original biological data for Cumbo et al 2013 including respiration raw data, respiration by mg protein, symbiont densities, protein content, % mortality
download
58424
https://datadocs.bco-dmo.org/docs/302/Climate_Coral_Larvae/data_docs/Cumbo_etal_2012_JEMBE_Tank_Parameters_BCODMO.xlsx
Tank physical data
Tank physical data for "brooded coral larvae 3" experiment including seawater chemistry, light and temperature data.
download
https://osprey.bco-dmo.org/dataset/535266/data/download
download
onLine
dataset
<p>Larval respiration was measured in a confined respirometer use a Ruthenium-based optrode (FOXY-R, 1.58 diameter, Ocean Optics) connected to a spectrophotometer (USB2000, Ocean Optics) and interfaced with a computer running the manufacturers software (OOISensor, version 1.00.08). The optrode was calibrated using a zero solution (0.01 M Na2B4O7·10H2O supersaturated with Na2SO3) and 100% air saturation usingwater-saturated air at the treatment temperature. Tomeasure respiration, 6 larvae were removed from the tubs in the treatment tanks and placed into 2-mL glass Wheaton vials filled with filtered seawater from the same treatment tank and sealed with Parafilm. A study conducted concurrently with the present analysis demonstrated that respiration of <em>P. damicornis</em> larvae in identical vials could be measured accurately with 5 larvae vial-1 (Edmunds et al., 2011).</p>
<p>Initial O2 concentration in the seawater was determined before the vials were sealed, and vials without larvae used as controls. Larvae in the sealed vials were incubated at their temperature treatments for 1.5-2 h in the dark using water baths set to the temperature of the respective treatments (±0.1 °C, Hipoint, models LC-06 and LC-10); vials were carefully moved throughout the incubations to ensure the seawater remained mixed. Incubation timeswere selected to ensure O2 concentrations remained &gt;75% saturation. On completion of the incubations, vials were removed from the water baths, gently inverted to mix the seawater, and analyzed for O2 saturation. O2 saturation was converted to concentration using tabulated values of O2 solubility (N. Ramsing and J. Gundersen at http://www.unisense.com [based on Garcia and Gordon, 1992]) and the temperature and salinity of the seawater, and the change in O2 concentration used to calculate O2 flux after adjusting for controls. The respiration rates are expressed as nmol O2 mg protein-1 min-1.</p>
<p>The 'ambient' and 'high' pCO2 levels:&nbsp;49.4 Pa versus 86.2 Pa<br />
The 'ambient' and 'high' temperatures: 24.00 °C [ambient] versus 30.49 °C</p>
<p>Data also available from PANGAEA:&nbsp;<a href="http://doi.pangaea.de/10.1594/PANGAEA.823582" target="_blank">doi:10.1594/PANGAEA.823582</a></p>
Specified by the Principal Investigator(s)
<p><strong>BCO-DMO processing notes:</strong></p>
<p>- added conventional header with dataset name, PI name, version date, reference information<br />
- renamed parameters to BCO-DMO standard<br />
- added lab, lat, lon&nbsp;columns<br />
- reformated date from d-Mon-yy to yyyy-mm-dd<br />
- replaced blank cells with N_A<br />
- replaced blanks and within cells with underscores<br />
- changed Ambient to ambient; High to high; P. dam to Pocillopora_damicornis</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Aquarium chiller
Aquarium chiller
PI Supplied Instrument Name: Aquarium chiller PI Supplied Instrument Description:Aquatech Ac11 or Shyeh Duwai Enterprise Instrument Name: Aquarium chiller Instrument Short Name:Aquarium chiller Instrument Description: Immersible or in-line liquid cooling device, usually with temperature control.
Gas Analyzer
Gas Analyzer
PI Supplied Instrument Name: Gas Analyzer PI Supplied Instrument Description:Infra Red gas analyzer (S151, Qubit Systems) Instrument Name: Gas Analyzer Instrument Short Name:Gas Analyzer Instrument Description: Gas Analyzers - Instruments for determining the qualitative and quantitative composition of gas mixtures.
Immersion heater
Immersion heater
PI Supplied Instrument Name: Immersion heater PI Supplied Instrument Description:300 Wheaters, Taikong Corporation Instrument Name: Immersion heater Instrument Short Name:Immersion heater Instrument Description: Submersible heating element for water tanks and aquaria.
LI-COR LI-192 light sensor
LI-COR LI-192 light sensor
PI Supplied Instrument Name: LI-COR LI-192 light sensor PI Supplied Instrument Description:cosine-corrected quantum light meter (Li-Cor LI-192 attached to an LI-1400) Instrument Name: LI-COR LI-192 PAR Sensor Instrument Short Name:LI-COR LI-192 PAR Instrument Description: The LI-192 Underwater Quantum Sensor (UWQ) measures underwater or atmospheric Photon Flux Density (PPFD) (Photosynthetically Available Radiation from 360 degrees) using a Silicon Photodiode and glass filters encased in a waterproof housing. The LI-192 is cosine corrected and features corrosion resistant, rugged construction for use in freshwater or saltwater and pressures up to 800 psi (5500 kPa, 560 meters depth). Typical output is in um s-1 m-2. The LI-192 uses computer-tailored filter glass to achieve the desired quantum response. Calibration is traceable to NIST. The LI-192 serial numbers begin with UWQ-XXXXX. LI-COR has been producing Underwater Quantum Sensors since 1973.
These LI-192 sensors are typically listed as LI-192SA to designate the 2-pin connector on the base of the housing and require an Underwater Cable (LI-COR part number 2222UWB) to connect to the pins on the Sensor and connect to a data recording device.
The LI-192 differs from the LI-193 primarily in sensitivity and angular response.
193: Sensitivity: Typically 7 uA per 1000 umol s-1 m-2 in water. Azimuth: < ± 3% error over 360° at 90° from normal axis. Angular Response: < ± 4% error up to ± 90° from normal axis.
192: Sensitivity: Typically 4 uA per 1000 umol s-1 m-2 in water. Azimuth: < ± 1% error over 360° at 45° elevation. Cosine Correction: Optimized for underwater and atmospheric use.
(www.licor.com) Community Standard Description: http://vocab.nerc.ac.uk/collection/L22/current/TOOL0120/
optrode
optrode
PI Supplied Instrument Name: optrode PI Supplied Instrument Description:A Ruthenium-based optrode (FOXY-R, 1.58 diameter, Ocean Optics) connected to a spectrophotometer (USB2000, Ocean Optics) and interfaced with a computer running the manufacturers software (OOISensor, version 1.00.08). The optrode was calibrated using a zero solution (0.01 M Na2B4O7·10H2O supersaturated with Na2SO3) and 100% air saturation using water-saturated air at the treatment temperature. Instrument Name: Optode Instrument Short Name: Instrument Description: An optode or optrode is an optical sensor device that optically measures a specific substance usually with the aid of a chemical transducer.
spectrophotometer
spectrophotometer
PI Supplied Instrument Name: spectrophotometer PI Supplied Instrument Description:USB2000, Ocean Optics Instrument Name: Spectrophotometer Instrument Short Name:Spectrophotometer Instrument Description: An instrument used to measure the relative absorption of electromagnetic radiation of different wavelengths in the near infra-red, visible and ultraviolet wavebands by samples. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/LAB20/
Water Temp Sensor
Water Temp Sensor
PI Supplied Instrument Name: Water Temp Sensor PI Supplied Instrument Description:certified digital thermometer (Model 15-077-8, Fisher Scientific,±0.05 °C) Instrument Name: Water Temperature Sensor Instrument Short Name:Water Temp Sensor Instrument Description: General term for an instrument that measures the temperature of the water with which it is in contact (thermometer). Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/134/
Deployment: lab_Edmunds_NMMBA
lab_Edmunds_NMMBA
Natl Museum Mar. Bio. and Aquar. Taiwan
Natl Museum Mar. Bio. and Aquar. Taiwan
laboratory
lab_Edmunds_NMMBA
Peter J. Edmunds
California State University Northridge
Natl Museum Mar. Bio. and Aquar. Taiwan
Natl Museum Mar. Bio. and Aquar. Taiwan
laboratory