http://lod.bco-dmo.org/id/dataset/535656
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2014-10-21
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Annual coral colony surface area and perimeter measurements from Maui, Hawaii, 1999-2005 (HI Coral Reefs project)
2014-10-16
publication
2014-10-16
revision
BCO-DMO Linked Data URI
2014-10-16
creation
http://lod.bco-dmo.org/id/dataset/535656
Megan Donahue
University of Hawaiʻi at Mānoa
principalInvestigator
Paul Jokiel
University of Hawaiʻi at Mānoa
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Donahue, M., Jokiel, P. (2014) Annual coral colony surface area and perimeter measurements from Maui, Hawaii, 1999-2005 (HI Coral Reefs project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 2014-10-16) Version Date 2014-10-16 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/535656 [access date]
annual coral colony surface area and perimeter measurements from Maui, Hawaii, 1999-2005 Dataset Description: <p>Annual surface area measurements of coral colonies in images of 0.37m<sup>2</sup> quadrats at stations around Maui, Hawaii 1999- 2005 associated with the Hawai‘i Coral Reef Assessment and Monitoring Program (Hawai‘i - CRAMP).</p>
<p><em>Access to this data is restricted until June 2015.</em> &nbsp;Please contact the M. Ross [<a href="mailto:mcolvin@hawaii.edu">mcolvin@hawaii.edu</a>] for further information.</p> Methods and Sampling: <p>Colony size and transition data were extracted from digital images of permanently marked quadrats provided by the Hawaii Coral Reef Assessment and Monitoring Program (CRAMP) and the Hawaii State Division of Aquatic Resources (DAR). In 1999, CRAMP/DAR established nine long-term monitoring locations around Maui, Hawaii (Jokiel et al. 2004) with two 100m transects at each location. In 1999, five 0.37 m<sup>2</sup> quadrats were randomly located along each transect and permanently marked with stainless steel pins.&nbsp; These permanent quadrats were photographed annually from 1999 to 2005 (Brown 2004). At least five years of useable images are available for eight locations over that time period.</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1041673 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1041673
completed
Megan Donahue
University of Hawaiʻi at Mānoa
808-236-7417
Hawai‘i Institute of Marine Biology 46-007 Lilipuna Road
Kane'ohe
HI
96744
USA
donahuem@hawaii.edu
pointOfContact
Paul Jokiel
University of Hawaiʻi at Mānoa
808-236-7440
Hawai‘i Institute of Marine Biology PO Box 1346
Kāne‘ohe,
HI
96744
USA
jokiel@hawaii.edu
pointOfContact
asNeeded
Dataset Version: 2014-10-16
Unknown
island
site
lat
lon
depth
quadrat
species
colony
year
allfate
fate
fusee
area
perimeter
peri_area
camera
theme
None, User defined
region
site
latitude
longitude
depth
No BCO-DMO term
species scientific name (binomial)
year
featureType
BCO-DMO Standard Parameters
Camera
instrument
BCO-DMO Standard Instruments
Donahue_2014
service
Deployment Activity
Maui coral reefs
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Comparative Analysis of Marine Ecosystem Organization
http://www.nsf.gov/geo/oce/programs/CAMEO_Webpage.jsp
Comparative Analysis of Marine Ecosystem Organization
CAMEO Science Plan (2012).
The Comparative Analysis of Marine Ecosystem Organization (CAMEO) program was implemented as a partnership between the NOAA National Marine Fisheries Service and National Science Foundation Division of Ocean Sciences. The purpose of CAMEO was to strengthen the scientific basis for an ecosystem approach to the stewardship of our ocean and coastal living marine resources. The program supported fundamental research to understand complex dynamics controlling ecosystem structure, productivity, behavior, resilience, and population connectivity, as well as effects of climate variability and anthropogenic pressures on living marine resources and critical habitats. CAMEO encouraged the development of multiple approaches, such as ecosystem models and comparative analyses of managed and unmanaged areas (e.g., marine protected areas) that can ultimately form a basis for forecasting and decision support. Central to the program was the emphasis on collaborations between academic and private researchers and federal agency scientists with mission responsibilities to inform ecosystem management activities. (adapted from CAMEO website)
This funding opportunity implemented CAMEO research by supporting the development of research tools and strategic approaches through the following types of proposals:
1. Development of strategies and methodologies for comparative analyses that can be applied consistently across spatial and temporal scales and ecosystems, and that facilitate the design of decision support tools for marine populations, ecosystems and habitats.
2. Development of models that address key scientific questions by comparing ecosystems and ecosystem processes. Models that are geographically and temporally portable, and that incorporate assessment of modeling skill, are particularly encouraged.
3. Retrospective studies that analyze, re-analyze or synthesize existing information (historic, time-series, ongoing program, etc.) using a comparative approach.
4. Studies that integrate the human dimension within ecosystem dynamics. The CAMEO program seeks to promote interdisciplinary research using comparative approaches to link marine ecosystem research with the social and behavioral sciences in new and vital ways.
To guide program priorities, a Science Steering Committee was formed through Dr. Linda Deegan and the initial Scientific Planning Office at the Marine Biological Laboratory in Woods Hole, MA. This Committee was designed to provide scientific advice and broad direction to NOAA and NSF regarding the CAMEO program.
CAMEO
largerWorkCitation
program
CAMEO: Multiscale modeling of Hawaii's coral reef communities
https://osprey.bco-dmo.org/project/535313
CAMEO: Multiscale modeling of Hawaii's coral reef communities
<p><em>From the NSF award Abstract:</em></p>
<p>A key challenge in the effective management of marine ecosystems is translating from small scale studies of distribution and dynamics to the regional scale of management action. In many marine ecosystems, including the Hawaiian Archipelago, there are extensive survey data of nearshore communities from multiple investigators, representing a huge investment of resources. Often, these data are underutilized and remain of limited use to managers. In the Hawaiian Archipelago, at least seven separate entities are engaged in surveys of coral reef communities, with varying degrees of coordination. The synthesis of these data requires integrated modeling approaches at multiple scales. This study builds on an existing database and extends two existing models: the Coral Recovery Model (CRM) of stochastic coral recovery after disturbance and the COMBO model of the synergistic impacts of increasing acidification and temperature on coral reefs. Extending from this prior work is the application of two innovative modeling approaches (scale transition theory and fundamental niche modeling) to predict coral community composition and dynamics at the regional scale. Fundamental niche modeling uses multiple data fitting approaches (regression, machine learning, etc) to describe the relationship between species and their environments, using a split dataset for training and validation. This approach can generate a predictive and validated spatially continuous model of species distribution from discrete data points. The scale transition modeling will use the completed database of species distributions as the landscape on which species interactions occur. These interactions are described by a local model, here, based on recruitment, growth, and mortality from the Coral Recovery Model. In scale transition theory, the local model plus landscape information on the distribution and co-distribution of organisms and their environments predicts how a species assemblage responds (locally and regionally) to changes in biotic and abiotic factors on the landscape.</p>
<p>This project will generate four products relevant to ecosystem-based management of the Hawaiian Archipelago, resulting in significant impacts beyond the research community: (1) A Hawaiian Archipelago-wide GIS database of coral distribution, benthic community data, fish surveys, and other data gathered by CRAMP, NPS (National Park Service), various divisions in NOAA, the Hawaii Division of Aquatic Resources, and other sources into a single GIS database; (2) Validated, predictive, and spatially continuous maps of coral species distribution throughout the Archipelago; (3) A validated Coral Recovery Model for coral reef mitigation in the Main Hawaiian Islands; (4) Prediction of coral community response to climate change throughout the Hawaiian Archipelago, based on known and predicted coral distributions and the COMBO model.</p>
<p><strong>Publications resulting from this project:</strong></p>
<p>Hoeke, R. K.; Jokiel, PL; Buddemeier, RW; Brainard, RE. "Projected Changes to Growth and Mortality of Hawaiian Corals over the Next 100 Years,", v.6, 2011.</p>
<p>Jokiel, Paul L. "The reef coral two compartment proton flux model: A new approach relating tissue-level physiological processes to gross corallum morphology,"<em>Journal of Experimental Marine Biology and Ecology, v.409, 2011, p. 1.</em></p>
<p>Franklin, Erik C.; Jokiel, Paul L.; Donahue, Megan J. "Predictive modeling of coral distribution and abundance in the Hawaiian Islands,"<em>MARINE ECOLOGY PROGRESS SERIES</em>, v.481, 2013, p. 121-132.</p>
<p>Hoeke, Ron K.; Jokiel, Paul L.; Buddemeier, Robert W.; Brainard, Russell E. "Projected Changes to Growth and Mortality of Hawaiian Corals over the Next 100 Years,"<em>PLOS ONE</em>, v.6, 2011, p. e18038.</p>
<p>Jokiel, Paul L.; "The reef coral two compartment proton flux model: A new approach relating tissue-level physiological processes to gross corallum morphology,"<em>JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY</em>, v.409, 2011, p. 1-12.</p>
<p>Jokiel, Paul Louis; "Ocean acidification and control of reef coral calcification by boundary layer limitation of proton flux", <em>BULLETIN OF MARINE SCIENCE</em>, v.87, 2011, p. 639-657.</p>
<p>Kuffner, Ilsa B.; Jokiel, Paul L.; Rodgers, Ku'ulei S.; Andersson, Andreas J.; Mackenzie, Fred T. "An apparent "vital effect" of calcification rate on the Sr/Ca temperature proxy in the reef coral Montipora capitata," <em>Nature Geoscience</em>, v.13, 2012, p. 114-117.</p>
<p>Jokiel P. L. "Coral reef calcification: carbonate, bicarbonate and proton flux under conditions of increasing ocean acidification,"<em>Proc R Soc B</em>, v.vol. 28, 2013, p. 20130031.</p>
HI Coral Reefs
largerWorkCitation
project
eng; USA
biota
oceans
Maui coral reefs
2014-10-16
Hawaiian Islands
0
BCO-DMO catalogue of parameters from Annual coral colony surface area and perimeter measurements from Maui, Hawaii, 1999-2005 (HI Coral Reefs project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/535689.rdf
Name: island
Units: unitless
Description: <p>island name</p>
http://lod.bco-dmo.org/id/dataset-parameter/535690.rdf
Name: site
Units: unitless
Description: <p>site name:<br />
HonN = Honolua Bay North;<br />
HonS = Honolua Bay South;<br />
Kahe = Kahekili Beach Park;<br />
KanB = Kanahena Bay;<br />
KanP = Kanahena Point;<br />
Molo= Molokini;<br />
Olowaa = Olowalu;<br />
Papa = Papaula;<br />
Puam = Puamana</p>
http://lod.bco-dmo.org/id/dataset-parameter/535691.rdf
Name: lat
Units: decimal degrees
Description: <p>latitude; north is positive</p>
http://lod.bco-dmo.org/id/dataset-parameter/535692.rdf
Name: lon
Units: decimal degrees
Description: <p>longitude; east is positive</p>
http://lod.bco-dmo.org/id/dataset-parameter/535693.rdf
Name: depth
Units: meters
Description: <p>average depth of the transect to nearest meter.</p>
http://lod.bco-dmo.org/id/dataset-parameter/535694.rdf
Name: quadrat
Units: 1 to 5
Description: <p>photoquadrat number</p>
http://lod.bco-dmo.org/id/dataset-parameter/535695.rdf
Name: species
Units: unitless
Description: <p>species name</p>
http://lod.bco-dmo.org/id/dataset-parameter/535696.rdf
Name: colony
Units: unitless
Description: <p>colony identification code</p>
http://lod.bco-dmo.org/id/dataset-parameter/535697.rdf
Name: year
Units: YYYY
Description: <p>year colony photo was taken</p>
http://lod.bco-dmo.org/id/dataset-parameter/535698.rdf
Name: allfate
Units: unitless
Description: <p>string of characters representing all of the fates observed for that colony up to the current year</p>
http://lod.bco-dmo.org/id/dataset-parameter/535699.rdf
Name: fate
Units: unitless
Description: <p>code describing colony activity over previous year:<br />
D = death;<br />
I = fission (one colony splits into two or more colonies);<br />
M = fission and fusion (one colony undergoes both fission and fusion in one year);<br />
N = new (code given to the measurement of a colony in the first year of the project);<br />
R = recruit (new; small colony); S = survival (colony persists from year t to t+1);<br />
U = fusion (two physiologically distinct colonies merge into a single colony and take the name of the larger colony);<br />
X = phoenix (colony was present in year t-1; not visible in year t; but reappeared in year t+1)</p>
http://lod.bco-dmo.org/id/dataset-parameter/535700.rdf
Name: fusee
Units: unitless
Description: <p>the name of the larger colony with which the smaller colony fused</p>
http://lod.bco-dmo.org/id/dataset-parameter/535701.rdf
Name: area
Units: cm^2
Description: <p>surface area of the colony as measured from photograph</p>
http://lod.bco-dmo.org/id/dataset-parameter/535702.rdf
Name: perimeter
Units: cm^2
Description: <p>perimeter of the colony measured in the photoquadrat image</p>
http://lod.bco-dmo.org/id/dataset-parameter/535703.rdf
Name: peri_area
Units: unitless
Description: <p>ratio of perimeter: area</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
998551
https://datadocs.bco-dmo.org/file/3YY3qz8sm3Aqyy/coral_colony_size.csv
coral_colony_size.csv
Primary data file for dataset ID 535656
download
https://osprey.bco-dmo.org/dataset/535656/data/download
download
onLine
dataset
<p>Colony size and transition data were extracted from digital images of permanently marked quadrats provided by the Hawaii Coral Reef Assessment and Monitoring Program (CRAMP) and the Hawaii State Division of Aquatic Resources (DAR). In 1999, CRAMP/DAR established nine long-term monitoring locations around Maui, Hawaii (Jokiel et al. 2004) with two 100m transects at each location. In 1999, five 0.37 m<sup>2</sup> quadrats were randomly located along each transect and permanently marked with stainless steel pins.&nbsp; These permanent quadrats were photographed annually from 1999 to 2005 (Brown 2004). At least five years of useable images are available for eight locations over that time period.</p>
Specified by the Principal Investigator(s)
<p>In each photoquadrat, every colony (defined as contiguous coral tissue) was traced and measured using Adobe Photoshop CS5.1 (the scale bar was set for each image). Individual colonies were named and tracked from year to year, and we used a custom JavaScript to export these measurements from Photoshop. For QA/QC, we flagged and checked colonies with unusual perimeter to area ratio. Substantial further analysis of growth, mortality, fission, and fusion rates flagged anomalous colonies, which we checked and retraced or relabeled as necessary. The primary source of error in these measurements comes from parallax when the camera angle changes slightly from year to year; as a percent of area, this error is larger for smaller colonies.</p>
<p>Colony numbering code methodology: A distinct colony code was assigned. It applies to each physiologically distinct colony in the quadrat. Individual colonies of each species in each quadrat were numbered starting from 01. A physiologically distinct colony retained the same colony number across all years. If a colony recruited after the first year, the next number in the series would be used. In colonies that underwent fission, the largest colony retained the original number and any smaller colonies resulting from the fission event were given the same number as the parent colony (largest fragment) with the addition of a lowercase letter starting from 'a'. If a colony assigned a number/letter combination underwent fission, resulting colonies were given the same name as the parent with a second letter added to the end of the name. For instance, if colony 01 underwent fission and made one smaller colony, the larger colony would continue with the name 01 and the smaller colony would be named 01a. If, in a subsequent year, colony 01a underwent fission and made one smaller colony, the larger colony would retain the name 01a and the smaller colony would be named 01aa.</p>
<p>Each year, every colony was assigned a fate observed between year t and year t-1. D = death, I = fission (one colony splits into two or more colonies), M = fission and fusion (one colony undergoes both fission and fusion in one year), N = new (code given to the measurement of a colony in the first year of the project), R = recruit (new, small colony), S = survival (colony persists from year t to t+1), U = fusion (two physiologically distinct colonies merge into a single colony and take the name of the larger colony), X = phoenix (colony was present in year t-1, not visible in year t, but reappeared in year t+1).</p>
<p>When two colonies fused together, the largest colony retains its colony number and the smaller colonies (now a part of this larger colony) are not recorded in subsequent years.&nbsp; Fusee is the name of the large colony with which the smaller colony fused that year.</p>
<p><strong>References:</strong></p>
<p>Brown, E.K., Cox, E., Jokiel, P.L., Rodgers, S.K., Smith, W.R., Tissot, B., Coles, S.L., and Hultquist, J. (2004) Development of Benthic Sampling Methods for the Coral Reef Assessment and Monitoring Program (CRAMP) in Hawai'i. Pacific Science 58:2 pp. 145-158 doi: 10.1353/psc.2004.0013</p>
<p>Jokiel, P.L., Brown, E.K., Friedlander, A., Rodgers, S.K., and Smith, W.R. (2004) Hawai'i Coral Reef Assessment and Monitoring Program: Spatial Patterns and Temporal Dynamics in Reef Coral Communities. Pacific Science 58:2, pp. 159-174 doi: 10.1353/psc.2004.0018</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
camera
camera
PI Supplied Instrument Name: camera PI Supplied Instrument Description:digital camera Instrument Name: Camera Instrument Short Name:camera Instrument Description: All types of photographic equipment including stills, video, film and digital systems. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/311/
Deployment: Donahue_2014
Donahue_2014
lab UHawaii_SOEST
laboratory
lab UHawaii_SOEST
laboratory