<div><p>Field assemblages of plankton were sampled during two cruises (EN496 and EN509), and shipboard experiments were conducted to test the community-level effects of <em>Karenia brevis</em> allelopathy on Gulf of Mexico plankton. The sampling and shipboard experiments are described fully in:<br />
Poulson-Ellestad et al. 2014. Are offshore phytoplankton susceptible to Karenia brevis allelopathy? J. Plankton Res. 36:1344-1356. doi: <a href="http://dx.doi.org/10.1093/plankt/fbu064" target="_blank">10.1093/plankt/fbu064</a></p>
<p>All raw files collected in DDA fashion with 90 minute gradient. These diatom species (either <em>A. glacialis </em>or <em>T. pseudonana</em>) were grown in flasks containing the toxic red tide forming dinoflagellate <em>K. brevis</em> in dialisis bags. This experimental design allowed allelopathic chemicals to be released by the dinoflagellate to the diatom of interest without contaminating the diatoms collected.</p>
<p>See related publication:<br />
Poulson-Ellestad, K.L., Jones, C.M., Roy, J., Viant, M.R., Fernandez, F.M., Kubanek, J., & Nunn, B.L. 2014. Metabolomics and proteomics reveal impacts of chemically mediated competition on marine plankton. PNAS Proc Natl Acad Sci USA, 111(24): 9009-14. doi:<a href="https://dx.doi.org/10.1073/pnas.1402130111" target="_blank">10.1073/pnas.1402130111</a></p></div>
Proteomics on diatom response to allelopathy from red tide dinoflagellate (Karenia brevis).
<div><p>Data files in .raw format are available from the Chorus repository (<a href="https://chorusproject.org" target="_blank">https://chorusproject.org</a>) under project ID number 650 (project name: "Diatom response to allelopathy"), experiment ID number 843.</p>
<p>Files can be downloaded from the following URL. Note the total file size is <strong>13.4 GB</strong>: <a href="https://chorusproject.org/anonymous/download/experiment/6729965144923166962" target="_blank">https://chorusproject.org/anonymous/download/experiment/6729965144923166962</a></p>
<p>The data files are in Thermo-Finnigan .raw format. Vendor software can be used to view these files, and there are free viewers that can also be used (one example is <a href="http://compbio.cs.princeton.edu/pview/" target="_blank">PVIEW</a>). The files can also be converted to mzXML files using MSconvert.</p></div>
Mass spec proteomics data
536893
Mass spec proteomics data
2014-10-31T12:19:17-04:00
2014-10-31T12:19:17-04:00
2023-07-07T16:10:26-04:00
urn:bcodmo:dataset:536893
Results of proteomic analysis on diatom response to allelopathy from red tide dinoflagellate (Karenia brevis)
false
Kubanek, J., Nunn, B. L., Fernandez, F. (2014) Results of proteomic analysis on diatom response to allelopathy from red tide dinoflagellate (Karenia brevis). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 31 October 2014) Version Date 2014-10-31 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/536893 [access date]
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31 October 2014
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2014-10-31
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